MC11g_new0274 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0274
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Autotransporter domain-containing protein
Location	MC11: 11274320 .. 11274845 (-)
RNA-Seq Expression	MC11g_new0274
Synteny	MC11g_new0274

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAGGTCTTTCTTTAATAACGATAGCAAATGATCCATGTGAATCTTCTTTTGCTTTATTATGACTTTTACCTGCAAAACCGACATATATATTCAGTTTTGTATCTCTTTTAAGTAACAAGCTGACCTTTACTTAGTATAAGGCATATTGACCTAATAGAAGTAGGGAGATGGCGGGGGAGGAGGCGACCTCCTTGGTCCTGGTAGCGGCACTCGGGGTCCTGGCAACGGTACCCTCGGTCCTGGCAGTGGCACTCGAGGTCCTGGCAGTGGTACCCTCGGTCCTGGCAGCGGTACCCTCGGTCCTGGTAGCGGCACCCTCGGTCCTGGTAGCGGCACTCTGGGGTCTGGTAGCGGCACCCGAGGTCCTGGTAGCGGCACTCGGGGTCCTGGTAGTGGTACCCTCGGTCCTGGTAGCGGCACTCTAGGGTCTGGTAGCGGCACCCGAGGTCCTGGTAGCGGCACTCGGGGTCCTGGTAGCGGTACCCTCGGAGACCTCCTTGGTGACGGTGGAGTAGAATAA

mRNA sequence

ATGAAGGAGGGAGATGGCGGGGGAGGAGGCGACCTCCTTGGTCCTGGTAGCGGCACTCGGGGTCCTGGCAACGGTACCCTCGGTCCTGGCAGTGGCACTCGAGGTCCTGGCAGTGGTACCCTCGGTCCTGGCAGCGGTACCCTCGGTCCTGGTAGCGGCACCCTCGGTCCTGGTAGCGGCACTCTGGGGTCTGGTAGCGGCACCCGAGGTCCTGGTAGCGGCACTCGGGGTCCTGGTAGTGGTACCCTCGGTCCTGGTAGCGGCACTCTAGGGTCTGGTAGCGGCACCCGAGGTCCTGGTAGCGGCACTCGGGGTCCTGGTAGCGGTACCCTCGGAGACCTCCTTGGTGACGGTGGAGTAGAATAA

Coding sequence (CDS)

ATGAAGGAGGGAGATGGCGGGGGAGGAGGCGACCTCCTTGGTCCTGGTAGCGGCACTCGGGGTCCTGGCAACGGTACCCTCGGTCCTGGCAGTGGCACTCGAGGTCCTGGCAGTGGTACCCTCGGTCCTGGCAGCGGTACCCTCGGTCCTGGTAGCGGCACCCTCGGTCCTGGTAGCGGCACTCTGGGGTCTGGTAGCGGCACCCGAGGTCCTGGTAGCGGCACTCGGGGTCCTGGTAGTGGTACCCTCGGTCCTGGTAGCGGCACTCTAGGGTCTGGTAGCGGCACCCGAGGTCCTGGTAGCGGCACTCGGGGTCCTGGTAGCGGTACCCTCGGAGACCTCCTTGGTGACGGTGGAGTAGAATAA

Protein sequence

MKEGDGGGGGDLLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTLGDLLGDGGVE

Homology

[Close]

BLAST of MC11g_new0274 vs. NCBI nr
Match: WP_175205136.1 (autotransporter outer membrane beta-barrel domain-containing protein [Achromobacter anxifer] >CAB3820697.1 hypothetical protein LMG26858_00179 [Achromobacter anxifer])

HSP 1 Score: 92.4 bits (228), Expect = 6.71e-19
Identity = 71/101 (70.30%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 12  LLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGSGTRGP 71
             G GSGT G G+GT G GSGT G GSGT G GSGT G GSGT G GSGT GSGSGT G 
Sbjct: 538 TTGGGSGTTGSGSGTTGNGSGTTGNGSGTTGSGSGTTGSGSGTTGSGSGTTGSGSGTTGN 597

Query: 72  GSGTRGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTLG 112
           GSGT G GSGT G GSGT GSGSGT G GSGT G GS T G
Sbjct: 598 GSGTTGSGSGTTGSGSGTTGSGSGTTGNGSGTTGSGSTTTG 638

[Close]

BLAST of MC11g_new0274 vs. NCBI nr
Match: XP_032834961.1 (GTP-binding protein RAD-like [Petromyzon marinus])

HSP 1 Score: 89.0 bits (219), Expect = 1.00e-17
Identity = 70/99 (70.71%), Postives = 72/99 (72.73%), Query Frame = 0


Query: 13  LGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGSGTRGPG 72
           L P SGT GP + T GP  GTRGP SGT GP S T GPGS T GP SGT G GSGTRGP 
Sbjct: 55  LRPESGTSGPESATRGPEPGTRGPESGTRGPESVTRGPGSVTRGPDSGTRGPGSGTRGPE 114

Query: 73  SGTRGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTL 111
           SGTRGP SGT GP SGT G  SGTRGP SGTRGP SG+L
Sbjct: 115 SGTRGPESGTPGPESGTRGPESGTRGPESGTRGPESGSL 153

[Close]

BLAST of MC11g_new0274 vs. NCBI nr
Match: WP_176088726.1 (autotransporter outer membrane beta-barrel domain-containing protein [Achromobacter anxifer] >CAB5513175.1 hypothetical protein LMG26857_02452 [Achromobacter anxifer])

HSP 1 Score: 88.6 bits (218), Expect = 1.50e-17
Identity = 68/105 (64.76%), Postives = 73/105 (69.52%), Query Frame = 0


Query: 12  LLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGSGTRGP 71
             G GSGT G G+GT G GSGT G GSGT G GSGT G G+GT G GSGT GSGSGT G 
Sbjct: 538 TTGGGSGTTGSGSGTTGNGSGTTGSGSGTTGSGSGTTGSGTGTTGSGSGTTGSGSGTTGS 597

Query: 72  GSGTRGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTLGDLLG 116
           GSGT G GSGT G GSGT G+GSGT G GS T G GS  +G  +G
Sbjct: 598 GSGTTGSGSGTTGSGSGTTGNGSGTTGSGSTTTGGGSSLVGSGIG 642

[Close]

BLAST of MC11g_new0274 vs. NCBI nr
Match: WP_200136977.1 (MULTISPECIES: hypothetical protein [unclassified Pseudomonas] >MBJ9973984.1 hypothetical protein [Pseudomonas sp. S30] >MBK0152086.1 hypothetical protein [Pseudomonas sp. S75])

HSP 1 Score: 75.5 bits (184), Expect = 3.21e-14
Identity = 65/106 (61.32%), Postives = 76/106 (71.70%), Query Frame = 0


Query: 16  GSGTRGPG-NGT-LGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGSGTRGPGS 75
           G+GT+G G +GT +G GSGT G GSGT G GSGT+G  SG +G GSGT GSGSGT G GS
Sbjct: 46  GNGTQGTGGDGTGMGSGSGTMGNGSGTTGNGSGTMGSDSGNMGNGSGTTGSGSGTMGNGS 105

Query: 76  GTRGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTLGDLLGDGG 119
           GT G GSGT+G GSG++G+GSG+ G GSG  G G G  G   G GG
Sbjct: 106 GTTGNGSGTMGNGSGSMGNGSGSMGNGSGMGGAGGGMGGGTGGSGG 151

[Close]

BLAST of MC11g_new0274 vs. NCBI nr
Match: XP_037975746.1 (jacalin-related lectin 5-like, partial [Plutella xylostella])

HSP 1 Score: 76.3 bits (186), Expect = 3.94e-14
Identity = 58/102 (56.86%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 9   GGDLLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGSGT 68
           GG    PGSGT  PG+G+  PG GT  PGSG+  PG GT  PGSGT  PGSG+  +G GT
Sbjct: 44  GGGTTKPGSGTTKPGSGSTAPGGGTTKPGSGSTSPGGGTTKPGSGTTKPGSGSTTTGGGT 103

Query: 69  RGPGSGTRGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGT 110
             PGSGT  PG+G+ GPG GT   GSG+  PG GT  PGSG+
Sbjct: 104 TKPGSGTTKPGTGSTGPGGGTTKPGSGSTSPGGGTTKPGSGS 145

[Close]

BLAST of MC11g_new0274 vs. ExPASy TrEMBL
Match: A0A6S7C9H9 (Autotransporter domain-containing protein OS=Achromobacter anxifer OX=1287737 GN=LMG26858_00179 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.25e-19
Identity = 71/101 (70.30%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 12  LLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGSGTRGP 71
             G GSGT G G+GT G GSGT G GSGT G GSGT G GSGT G GSGT GSGSGT G 
Sbjct: 538 TTGGGSGTTGSGSGTTGNGSGTTGNGSGTTGSGSGTTGSGSGTTGSGSGTTGSGSGTTGN 597

Query: 72  GSGTRGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTLG 112
           GSGT G GSGT G GSGT GSGSGT G GSGT G GS T G
Sbjct: 598 GSGTTGSGSGTTGSGSGTTGSGSGTTGNGSGTTGSGSTTTG 638

[Close]

BLAST of MC11g_new0274 vs. ExPASy TrEMBL
Match: W6NHC2 (Uncharacterized protein (Fragment) OS=Haemonchus contortus OX=6289 GN=HCOI_01938700 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.78e-15
Identity = 52/103 (50.49%), Postives = 61/103 (59.22%), Query Frame = 0


Query: 10  GDLLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGSGTR 69
           G  +GPG G  GPG G +GPG G  GPG G +GPG G +GPG G +GP  G +G G G  
Sbjct: 26  GGPMGPGGGPMGPGGGPMGPGGGPMGPGGGPMGPGGGPMGPGGGPMGPRGGPMGPGGGPM 85

Query: 70  GPGSGTRGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTLG 112
           GPG G   PG G +GP  G +G G G  GP  G  GPG G +G
Sbjct: 86  GPGGGPMEPGGGPMGPRGGLMGPGGGPMGPRGGPMGPGGGPMG 128

[Close]

BLAST of MC11g_new0274 vs. ExPASy TrEMBL
Match: A0A2N5SUB7 (Uncharacterized protein OS=Puccinia coronata f. sp. avenae OX=200324 GN=PCANC_15375 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.28e-14
Identity = 66/101 (65.35%), Postives = 68/101 (67.33%), Query Frame = 0


Query: 12  LLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGSGTRGP 71
           LLG GSGT G G+GT G GSGT G GSGT G GSG  G GSGT G GSGT GSGSG  G 
Sbjct: 30  LLGSGSGTYGSGSGTSGSGSGTYGSGSGTYGSGSGIYGSGSGTYGSGSGTYGSGSGGYGS 89

Query: 72  GSGTRGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTLG 112
           GSG+ G GS   G GSG  GSGSG  G GSGT G GSG  G
Sbjct: 90  GSGSYGSGSEGSGSGSGAYGSGSGGYGSGSGTYGSGSGGYG 130

[Close]

BLAST of MC11g_new0274 vs. ExPASy TrEMBL
Match: A0A7I4YKB6 (Uncharacterized protein OS=Haemonchus contortus OX=6289 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.78e-14
Identity = 53/104 (50.96%), Postives = 62/104 (59.62%), Query Frame = 0


Query: 9   GGDLLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGSGT 68
           GG  +GPG G  GPG G +GPG G  GPG G +GPG G +GPG G +GPG G +G   G 
Sbjct: 155 GGGPMGPGGGPMGPGGGPMGPGGGPMGPGGGPMGPGGGPMGPGGGPMGPGGGPMGPRGGP 214

Query: 69  RGPGSGTRGPGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTLG 112
            GPG G  GPG G + PG G +G   G  GPG G  GP  G +G
Sbjct: 215 MGPGGGPMGPGGGPMEPGGGPMGPRGGLMGPGGGPMGPRGGPMG 258

[Close]

BLAST of MC11g_new0274 vs. ExPASy TrEMBL
Match: A0A6I9JUV6 (mucin-19-like OS=Chrysochloris asiatica OX=185453 GN=LOC102838839 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.16e-13
Identity = 52/95 (54.74%), Postives = 66/95 (69.47%), Query Frame = 0


Query: 18   GTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSGSGTRGPGSGTRG 77
            GT+GP  GTLGP + T+GP  GT GP  GT GP + T GP  GT G  +GT+GP +GT+G
Sbjct: 2593 GTQGPSEGTLGPSASTKGPSPGTQGPSVGTNGPSASTTGPSEGTKGPSAGTQGPSAGTKG 2652

Query: 78   PGSGTLGPGSGTLGSGSGTRGPGSGTRGPGSGTLG 112
            P  GT GP +GT G  +GT+GP +GT+GP +GT G
Sbjct: 2653 PSEGTQGPSAGTRGPSAGTKGPSAGTQGPSAGTKG 2687

[Close]

BLAST of MC11g_new0274 vs. TAIR 10
Match: AT2G04170.1 (TRAF-like family protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.1e-04
Identity = 64/129 (49.61%), Postives = 65/129 (50.39%), Query Frame = 0


Query: 6   GGGGGDLLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSG 65
           GG GG   GPG G RG G    GPG G  GPG G  GPG G  GPG G  GPG G    G
Sbjct: 4   GGCGG---GPGRGGRGFGGRGGGPGFGPGGPGFGPGGPGFGPGGPGFGPGGPGFG----G 63

Query: 66  SGTRGPGSGTRGPG--SGTLGPGSGTLGSGSGTRGPGSGTRGP------------GSGTL 121
            G RGPG G RGPG  SG  GP  G  G G    GP SG RGP            GSGT 
Sbjct: 64  RGPRGPGFGPRGPGPWSGPRGPRPG--GGGGPGPGPWSGPRGPRPGGGGGPGSGCGSGTG 123

[Close]

BLAST of MC11g_new0274 vs. TAIR 10
Match: AT2G04170.2 (TRAF-like family protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.1e-04
Identity = 64/129 (49.61%), Postives = 65/129 (50.39%), Query Frame = 0


Query: 6   GGGGGDLLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSG 65
           GG GG   GPG G RG G    GPG G  GPG G  GPG G  GPG G  GPG G    G
Sbjct: 4   GGCGG---GPGRGGRGFGGRGGGPGFGPGGPGFGPGGPGFGPGGPGFGPGGPGFG----G 63

Query: 66  SGTRGPGSGTRGPG--SGTLGPGSGTLGSGSGTRGPGSGTRGP------------GSGTL 121
            G RGPG G RGPG  SG  GP  G  G G    GP SG RGP            GSGT 
Sbjct: 64  RGPRGPGFGPRGPGPWSGPRGPRPG--GGGGPGPGPWSGPRGPRPGGGGGPGSGCGSGTG 123

[Close]

BLAST of MC11g_new0274 vs. TAIR 10
Match: AT2G04170.5 (TRAF-like family protein )

HSP 1 Score: 42.0 bits (97), Expect = 4.1e-04
Identity = 64/129 (49.61%), Postives = 65/129 (50.39%), Query Frame = 0


Query: 6   GGGGGDLLGPGSGTRGPGNGTLGPGSGTRGPGSGTLGPGSGTLGPGSGTLGPGSGTLGSG 65
           GG GG   GPG G RG G    GPG G  GPG G  GPG G  GPG G  GPG G    G
Sbjct: 4   GGCGG---GPGRGGRGFGGRGGGPGFGPGGPGFGPGGPGFGPGGPGFGPGGPGFG----G 63

Query: 66  SGTRGPGSGTRGPG--SGTLGPGSGTLGSGSGTRGPGSGTRGP------------GSGTL 121
            G RGPG G RGPG  SG  GP  G  G G    GP SG RGP            GSGT 
Sbjct: 64  RGPRGPGFGPRGPGPWSGPRGPRPG--GGGGPGPGPWSGPRGPRPGGGGGPGSGCGSGTG 123

The following BLAST results are available for this feature:

BLAST of MC11g_new0274 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g_new0274 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_175205136.1	6.71e-19	70.30	autotransporter outer membrane beta-barrel domain-containing protein [Achromobac...	[more]
XP_032834961.1	1.00e-17	70.71	GTP-binding protein RAD-like [Petromyzon marinus]	[more]
WP_176088726.1	1.50e-17	64.76	autotransporter outer membrane beta-barrel domain-containing protein [Achromobac...	[more]
WP_200136977.1	3.21e-14	61.32	MULTISPECIES: hypothetical protein [unclassified Pseudomonas] >MBJ9973984.1 hypo...	[more]
XP_037975746.1	3.94e-14	56.86	jacalin-related lectin 5-like, partial [Plutella xylostella]	[more]

BLAST of MC11g_new0274 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6S7C9H9	3.25e-19	70.30	Autotransporter domain-containing protein OS=Achromobacter anxifer OX=1287737 GN...	[more]
W6NHC2	4.78e-15	50.49	Uncharacterized protein (Fragment) OS=Haemonchus contortus OX=6289 GN=HCOI_01938...	[more]
A0A2N5SUB7	2.28e-14	65.35	Uncharacterized protein OS=Puccinia coronata f. sp. avenae OX=200324 GN=PCANC_15...	[more]
A0A7I4YKB6	2.78e-14	50.96	Uncharacterized protein OS=Haemonchus contortus OX=6289 PE=4 SV=1	[more]
A0A6I9JUV6	1.16e-13	54.74	mucin-19-like OS=Chrysochloris asiatica OX=185453 GN=LOC102838839 PE=4 SV=1	[more]

BLAST of MC11g_new0274 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G04170.1	4.1e-04	49.61	TRAF-like family protein	[more]
AT2G04170.2	4.1e-04	49.61	TRAF-like family protein	[more]
AT2G04170.5	4.1e-04	49.61	TRAF-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..103
None	No IPR available	PANTHER	PTHR35846	PROTEIN CBG05131	coord: 14..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g_new0274.1	MC11g_new0274.1	mRNA