MC11g_new0220 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0220
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Rpn family recombination-promoting nuclease/putative transposase
Location	MC11: 9006344 .. 9006690 (-)
RNA-Seq Expression	MC11g_new0220
Synteny	MC11g_new0220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCCGAGACATATCCCGGACTGATCTCGAACCAAGATTGGTCCGAGACACTTCCCGGACTAATCCCGGACCAAGATTGGTCTGGGATAGTCCGGGATGAAGCAAAATTTTTATTTTATTTTGTTAACTCTTTCTTATCTCACGTAGTTTTATTCGATTTGCTGGATTGAGTCCGGGATTGAGTCTGAGATTGAATACAGGATTGAGTACGGGATTGAATCTGGGATTGAGTACGGGATTGAATTTGGGATTGAGTCCGGGATTAAGTACGGGATTGAATCCGGGATCGAATCTGGAAAACGATTATTCTATTTTCGATATCTGGAGCCCTACAATCTACCGTAA

mRNA sequence

ATGATCCGAGACATATCCCGGACTGATCTCGAACCAAGATTGGTCCGAGACACTTCCCGGACTAATCCCGGACCAAGATTGTTTTATTCGATTTGCTGGATTGAGTCCGGGATTGAGTCTGAGATTGAATACAGGATTGAGTACGGGATTGAATCTGGGATTGAGTACGGGATTGAATTTGGGATTGAGTCCGGGATTAAGTACGGGATTGAATCCGGGATCGAATCTGGAAAACGATTATTCTATTTTCGATATCTGGAGCCCTACAATCTACCGTAA

Coding sequence (CDS)

ATGATCCGAGACATATCCCGGACTGATCTCGAACCAAGATTGGTCCGAGACACTTCCCGGACTAATCCCGGACCAAGATTGTTTTATTCGATTTGCTGGATTGAGTCCGGGATTGAGTCTGAGATTGAATACAGGATTGAGTACGGGATTGAATCTGGGATTGAGTACGGGATTGAATTTGGGATTGAGTCCGGGATTAAGTACGGGATTGAATCCGGGATCGAATCTGGAAAACGATTATTCTATTTTCGATATCTGGAGCCCTACAATCTACCGTAA

Protein sequence

MIRDISRTDLEPRLVRDTSRTNPGPRLFYSICWIESGIESEIEYRIEYGIESGIEYGIEFGIESGIKYGIESGIESGKRLFYFRYLEPYNLP

Homology

[Close]

BLAST of MC11g_new0220 vs. NCBI nr
Match: KAG5874850.1 (hypothetical protein JTB14_021922 [Gonioctena quinquepunctata])

HSP 1 Score: 66.6 bits (161), Expect = 3.16e-12
Identity = 34/44 (77.27%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 34 IESGIESEIEYRIEYGIESGIEYGIEFGIESGIKYGIESGIESG 77
          IE GIE  IEY IEYGIE GIEYGIE+GIE GI+YGIE GIE G
Sbjct: 5  IEYGIEYGIEYGIEYGIEYGIEYGIEYGIEYGIEYGIEYGIEYG 48

[Close]

BLAST of MC11g_new0220 vs. NCBI nr
Match: KAG5874853.1 (hypothetical protein JTB14_021925 [Gonioctena quinquepunctata])

HSP 1 Score: 69.7 bits (169), Expect = 1.89e-11
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 34  IESGIESEIEYRIEYGIESGIEYGIEFGIESGIKYGIESGIESGKRLF 81
           IE GIE  IEY IEYGIE GIEYGIE+GIE GI+YGIE GIE G R++
Sbjct: 332 IEYGIEYGIEYGIEYGIEYGIEYGIEYGIEYGIEYGIEYGIEYGNRIW 379

[Close]

BLAST of MC11g_new0220 vs. NCBI nr
Match: KAG5874852.1 (hypothetical protein JTB14_021924 [Gonioctena quinquepunctata])

HSP 1 Score: 68.6 bits (166), Expect = 1.91e-11
Identity = 35/45 (77.78%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 34 IESGIESEIEYRIEYGIESGIEYGIEFGIESGIKYGIESGIESGK 78
          IE GIE  IEY IEYGIE GIEYGIE+GIE GI+YGIE GIE GK
Sbjct: 41 IEYGIEYGIEYGIEYGIEYGIEYGIEYGIEYGIEYGIEYGIEYGK 85

[Close]

BLAST of MC11g_new0220 vs. NCBI nr
Match: KAG5874849.1 (hypothetical protein JTB14_021921 [Gonioctena quinquepunctata])

HSP 1 Score: 66.6 bits (161), Expect = 2.60e-11
Identity = 34/44 (77.27%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 34 IESGIESEIEYRIEYGIESGIEYGIEFGIESGIKYGIESGIESG 77
          IE GIE  IEY IEYGIE GIEYGIE+GIE GI+YGIE GIE G
Sbjct: 56 IEYGIEYGIEYGIEYGIEYGIEYGIEYGIEYGIEYGIEYGIEYG 99

[Close]

BLAST of MC11g_new0220 vs. NCBI nr
Match: KAG5874854.1 (hypothetical protein JTB14_021926 [Gonioctena quinquepunctata])

HSP 1 Score: 60.8 bits (146), Expect = 2.58e-09
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 34  IESGIESEIEYRIEYGIESGIEYGIEFGIESGIKYGIESGIESG 77
           IE GIE  IEY +EYGIE G+EYGIE+GIE  ++YGIE GIE G
Sbjct: 59  IEYGIEYVIEYGVEYGIEYGMEYGIEYGIEYEMEYGIEYGIEYG 102

[Close]

BLAST of MC11g_new0220 vs. ExPASy TrEMBL
Match: A0A1Y1JI74 (Phosphatidylinositol-4-phosphate 5-kinase OS=Plasmodium gonderi OX=77519 GN=PGO_092650 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.23e-09
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 0


Query: 34  IESGIESEIEYRIEYGIESGIEYGIEFGIESGIKYGIESGIESG 77
           IESG ES IE  IE GIESGIE GIE G+ESGI+ GIESG+ESG
Sbjct: 819 IESGTESGIESGIESGIESGIESGIESGVESGIESGIESGVESG 862

[Close]

BLAST of MC11g_new0220 vs. ExPASy TrEMBL
Match: A0A4P5Z2U7 (Uncharacterized protein OS=Verrucomicrobia bacterium OX=2026799 GN=LBMAG56_01470 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.75e-08
Identity = 25/44 (56.82%), Postives = 37/44 (84.09%), Query Frame = 0


Query: 34  IESGIESEIEYRIEYGIESGIEYGIEFGIESGIKYGIESGIESG 77
           +ESG+ES +E  +E G+ESG+E G+E G+ESG++ G+ESG+ESG
Sbjct: 434 VESGVESGVESGVESGVESGVESGVESGVESGVESGVESGVESG 477

[Close]

BLAST of MC11g_new0220 vs. ExPASy TrEMBL
Match: A0A2G4F2M2 (Transposase OS=Tychonema bourrellyi FEM_GT703 OX=2040638 GN=CP500_009435 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.09e-08
Identity = 32/46 (69.57%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 34  IESGIESEIEYRIEYGIESGIEYGIEFGIESGIKYGIESGIESGKR 79
           IE GIE  IE  IE GIE GIE GIE GIE GI+ GIE GIE GKR
Sbjct: 268 IEQGIERGIEQGIERGIEQGIEQGIEQGIEQGIEQGIEQGIERGKR 313

[Close]

BLAST of MC11g_new0220 vs. ExPASy TrEMBL
Match: A0A1V2M4E8 (Uncharacterized protein OS=Epulopiscium sp. SCG-B11WGA-EpuloA1 OX=1710701 GN=AN396_12975 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.15e-08
Identity = 30/45 (66.67%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 34  IESGIESEIEYRIEYGIESGIEYGIEFGIESGIKYGIESGIESGK 78
           IE GIE  IE  IE GIE GIE GIE GIE GI+ GIE GIE G+
Sbjct: 80  IEQGIEQGIEQGIEQGIEQGIEQGIEQGIEQGIEQGIEQGIEQGR 124

[Close]

BLAST of MC11g_new0220 vs. ExPASy TrEMBL
Match: A0A7J5Y2M7 (Uncharacterized protein OS=Dissostichus mawsoni OX=36200 GN=F7725_002459 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.48e-08
Identity = 20/45 (44.44%), Postives = 38/45 (84.44%), Query Frame = 0


Query: 33 WIESGIESEIEYRIEYGIESGIEYGIEFGIESGIKYGIESGIESG 77
          W+E+G+E+ +E  +E G+E+G+E G+E G+E+G++ G+E+G+E+G
Sbjct: 7  WVEAGVEAGVEAGVEAGVEAGVEAGVEAGVEAGVEAGVEAGVEAG 51

The following BLAST results are available for this feature:

BLAST of MC11g_new0220 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g_new0220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG5874850.1	3.16e-12	77.27	hypothetical protein JTB14_021922 [Gonioctena quinquepunctata]	[more]
KAG5874853.1	1.89e-11	72.92	hypothetical protein JTB14_021925 [Gonioctena quinquepunctata]	[more]
KAG5874852.1	1.91e-11	77.78	hypothetical protein JTB14_021924 [Gonioctena quinquepunctata]	[more]
KAG5874849.1	2.60e-11	77.27	hypothetical protein JTB14_021921 [Gonioctena quinquepunctata]	[more]
KAG5874854.1	2.58e-09	68.18	hypothetical protein JTB14_021926 [Gonioctena quinquepunctata]	[more]

BLAST of MC11g_new0220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1Y1JI74	5.23e-09	75.00	Phosphatidylinositol-4-phosphate 5-kinase OS=Plasmodium gonderi OX=77519 GN=PGO_...	[more]
A0A4P5Z2U7	1.75e-08	56.82	Uncharacterized protein OS=Verrucomicrobia bacterium OX=2026799 GN=LBMAG56_01470...	[more]
A0A2G4F2M2	4.09e-08	69.57	Transposase OS=Tychonema bourrellyi FEM_GT703 OX=2040638 GN=CP500_009435 PE=4 SV...	[more]
A0A1V2M4E8	5.15e-08	66.67	Uncharacterized protein OS=Epulopiscium sp. SCG-B11WGA-EpuloA1 OX=1710701 GN=AN3...	[more]
A0A7J5Y2M7	6.48e-08	44.44	Uncharacterized protein OS=Dissostichus mawsoni OX=36200 GN=F7725_002459 PE=4 SV...	[more]

BLAST of MC11g_new0220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g_new0220.1	MC11g_new0220.1	mRNA