MC11g_new0187 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC11g_new0187
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC11: 7112360 .. 7112575 (-)
RNA-Seq ExpressionMC11g_new0187
SyntenyMC11g_new0187
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGCGGTGATTCCAATGAAGCTGTGGTTCTCTTACTTCTTCATTATAACAATAATGTTATTGCTGCCATTTTCGAGCTTCGGAGCTCATTCTCCAGCTGGGCTTATGGAAAGTGCAAGAGAAGCATTAATGGCTAGCCTTCTCAGGCAAGGTGGAAGGACCTACCAGGTGCAGCGGAGCAGCCCCGGAGGCCCTGATCAGCATCATCATTGA

mRNA sequence

ATGGCGGCGGTGATTCCAATGAAGCTGTGGTTCTCTTACTTCTTCATTATAACAATAATGTTATTGCTGCCATTTTCGAGCTTCGGAGCTCATTCTCCAGCTGGGCTTATGGAAAGTGCAAGAGAAGCATTAATGGCTAGCCTTCTCAGGCAAGGTGGAAGGACCTACCAGGTGCAGCGGAGCAGCCCCGGAGGCCCTGATCAGCATCATCATTGA

Coding sequence (CDS)

ATGGCGGCGGTGATTCCAATGAAGCTGTGGTTCTCTTACTTCTTCATTATAACAATAATGTTATTGCTGCCATTTTCGAGCTTCGGAGCTCATTCTCCAGCTGGGCTTATGGAAAGTGCAAGAGAAGCATTAATGGCTAGCCTTCTCAGGCAAGGTGGAAGGACCTACCAGGTGCAGCGGAGCAGCCCCGGAGGCCCTGATCAGCATCATCATTGA

Protein sequence

MAAVIPMKLWFSYFFIITIMLLLPFSSFGAHSPAGLMESAREALMASLLRQGGRTYQVQRSSPGGPDQHHH
Homology
BLAST of MC11g_new0187 vs. NCBI nr
Match: KAG6607905.1 (hypothetical protein SDJN03_01247, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.9 bits (211), Expect = 3.45e-20
Identity = 47/71 (66.20%), Postives = 55/71 (77.46%), Query Frame = 0

Query: 1  MAAVIPMKLWFSYFFIITIMLLLPFSSFGAHSPAGLMESAREALMASLLRQGGRTYQVQR 60
          M A I +KL   +F +I   +L+PF SFGA SP+G MESAREALMASL RQG R +QVQR
Sbjct: 1  MGAAIGVKLLLCFFIVI---ILVPFLSFGAPSPSGFMESAREALMASLHRQGERRFQVQR 60

Query: 61 SSPGGPDQHHH 71
          S+PGGPDQHHH
Sbjct: 61 STPGGPDQHHH 68

BLAST of MC11g_new0187 vs. NCBI nr
Match: KGN55082.1 (hypothetical protein Csa_012608 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 4.45e-16
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 0

Query: 2  AAVIPMKLWFSYFFIITIMLLLPFSSFGA----------HSPAGLMESAREALMASLLRQ 61
          A ++ +K +F  F  IT+++LLPF SFG+            P+G MESA++ALMASL R+
Sbjct: 4  AIIVMIKFFFVCF--ITVIILLPFLSFGSAPPPPPPPSSSPPSGFMESAKDALMASLQRR 63

Query: 62 GGRTYQVQRSSPGGPDQHHH 71
          GG+ +QVQR+SPGGPDQHHH
Sbjct: 64 GGKPFQVQRTSPGGPDQHHH 81

BLAST of MC11g_new0187 vs. NCBI nr
Match: KAE8703294.1 (putative Mitochondrial transcription termination factor family protein [Hibiscus syriacus])

HSP 1 Score: 50.4 bits (119), Expect = 1.20e-05
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 0

Query: 30  AHSPAGLMESAREALMASLLRQGGRTYQVQRSSPGGPDQHHH 71
           A S   L+E  REA+ AS+ R GG  ++ +R+SPGGPD HHH
Sbjct: 85  AESKRALVEEGREAIKASIQRNGGEPFESKRTSPGGPDPHHH 126

BLAST of MC11g_new0187 vs. NCBI nr
Match: KAG8485024.1 (hypothetical protein CXB51_021303 [Gossypium anomalum])

HSP 1 Score: 49.7 bits (117), Expect = 2.14e-05
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 0

Query: 28  FGAHSPAGLMESAREALMASLLRQGGRTYQVQRSSPGGPDQHHH 71
           FG  +   L+E  REA+ ASL R  G  ++ +R SPGGPD HHH
Sbjct: 77  FGGTNKRALIEEGREAIQASLKRNAGNPFESKRRSPGGPDPHHH 120

BLAST of MC11g_new0187 vs. NCBI nr
Match: MBA0852935.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 49.7 bits (117), Expect = 2.14e-05
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 0

Query: 28  FGAHSPAGLMESAREALMASLLRQGGRTYQVQRSSPGGPDQHHH 71
           FG  +   L+E  REA+ ASL R  G  ++ +R SPGGPD HHH
Sbjct: 77  FGGTNKLALIEEGREAIQASLKRNAGNPFESKRRSPGGPDPHHH 120

BLAST of MC11g_new0187 vs. ExPASy TrEMBL
Match: A0A0A0L3B3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627810 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 2.15e-16
Identity = 42/80 (52.50%), Postives = 57/80 (71.25%), Query Frame = 0

Query: 2  AAVIPMKLWFSYFFIITIMLLLPFSSFGA----------HSPAGLMESAREALMASLLRQ 61
          A ++ +K +F  F  IT+++LLPF SFG+            P+G MESA++ALMASL R+
Sbjct: 4  AIIVMIKFFFVCF--ITVIILLPFLSFGSAPPPPPPPSSSPPSGFMESAKDALMASLQRR 63

Query: 62 GGRTYQVQRSSPGGPDQHHH 71
          GG+ +QVQR+SPGGPDQHHH
Sbjct: 64 GGKPFQVQRTSPGGPDQHHH 81

BLAST of MC11g_new0187 vs. ExPASy TrEMBL
Match: A0A6A3AFG2 (Putative Mitochondrial transcription termination factor family protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110472pilonHSYRG00254 PE=4 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 5.82e-06
Identity = 22/42 (52.38%), Postives = 29/42 (69.05%), Query Frame = 0

Query: 30  AHSPAGLMESAREALMASLLRQGGRTYQVQRSSPGGPDQHHH 71
           A S   L+E  REA+ AS+ R GG  ++ +R+SPGGPD HHH
Sbjct: 85  AESKRALVEEGREAIKASIQRNGGEPFESKRTSPGGPDPHHH 126

BLAST of MC11g_new0187 vs. ExPASy TrEMBL
Match: A0A7J9L2C7 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_011527 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.03e-05
Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 0

Query: 28  FGAHSPAGLMESAREALMASLLRQGGRTYQVQRSSPGGPDQHHH 71
           FG  +   L+E  REA+ ASL R  G  ++ +R SPGGPD HHH
Sbjct: 77  FGGTNKLALIEEGREAIQASLKRNAGNPFESKRRSPGGPDPHHH 120

BLAST of MC11g_new0187 vs. ExPASy TrEMBL
Match: A0A7J9N6Z9 (Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_002160 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.07e-05
Identity = 22/40 (55.00%), Postives = 27/40 (67.50%), Query Frame = 0

Query: 32 SPAGLMESAREALMASLLRQGGRTYQVQRSSPGGPDQHHH 71
          S   L+E  REA+ AS+ R GG  Y+ +R SPGGPD HHH
Sbjct: 49 SKRALIEEGREAIKASIERNGGIPYETKRRSPGGPDPHHH 88

BLAST of MC11g_new0187 vs. ExPASy TrEMBL
Match: A0A7J9ILD6 (Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_019677 PE=4 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.13e-05
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 0

Query: 32  SPAGLMESAREALMASLLRQGGRTYQVQRSSPGGPDQHHH 71
           S   L+E  REAL AS+ R GG  Y+ +R SPGGPD HHH
Sbjct: 86  SKRALIEEGREALKASIERNGGIPYETKRRSPGGPDPHHH 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6607905.13.45e-2066.20hypothetical protein SDJN03_01247, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN55082.14.45e-1652.50hypothetical protein Csa_012608 [Cucumis sativus][more]
KAE8703294.11.20e-0552.38putative Mitochondrial transcription termination factor family protein [Hibiscus... [more]
KAG8485024.12.14e-0550.00hypothetical protein CXB51_021303 [Gossypium anomalum][more]
MBA0852935.12.14e-0550.00hypothetical protein [Gossypium schwendimanii][more]
Match NameE-valueIdentityDescription
A0A0A0L3B32.15e-1652.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G627810 PE=4 SV=1[more]
A0A6A3AFG25.82e-0652.38Putative Mitochondrial transcription termination factor family protein OS=Hibisc... [more]
A0A7J9L2C71.03e-0550.00Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_011527 PE=4... [more]
A0A7J9N6Z91.07e-0555.00Uncharacterized protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_002160 PE=4... [more]
A0A7J9ILD61.13e-0557.50Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_019677 PE=4 S... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC11g_new0187.1MC11g_new0187.1mRNA