MC11g_new0123 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0123
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC11: 5212052 .. 5215157 (-)
RNA-Seq Expression	MC11g_new0123
Synteny	MC11g_new0123

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACAATCTGAACTATATTCTAACGGCCAATCATATTGACTGAGTTAAAATGATCTGACTCCTTGTTCATACACTACAAGAAAAATGTAATTAATTTCCATCGTTATACCACATTCACACATATTGCAACTATTTTACAGAGAAAAAAAAAATAGTAGCACATAATTTAAAATTTGAATTTTTTAAAAGAAAAAATTGTAGGCTTGATTATTTTTCTATTAAATCTACAATGTTAAATCATTAACAAGATGCAGATTTTTTATTTTTGAAATGAAGGTAATAATTCATTAAGAAGGTAAATCGTTATTTGCTAACAAACAAATCCACGAAGGGATTTCTGCCAAAACAGGGTCCCAAACCCGCGAGATTTCTTCGTCCATGGAATTGGAGCTTCGACCGCTGCTGCTCTTCAAATCATGCGGCATCTGCGTTGAGCTTCCAAGAATTTAGGGGTGGAGGAGACCAAGATTCAGGTACACTTTCATGTCTCTGTTCAAGAAGATTTTGCCCTAAAGTGAAATTTGAGTTGAGCTTCTGATCGTAAAATAGCTGTGTTTCAATTTTGTATCCGAGTCTGTGTTGGTGTGGAATCTCCCCTAAAAAATCACCGAATTTCTCTAGGACCAAATTTTCCGCGCCATGGTCATCGCTCTATCCAGCTCTTGCTGCTTGGCATGCTCGATAAGCCAGTTCCAGTAGTCCCAATTCGTCCACGAGTTTGTGAATGGATTAAAAATTTCCATAAGAACTCAGGAAAGATCCCACAGTGGTTTGGTTACTTTGGACTCCCATAGAAGGTGCTTTATAGATTCCTCTTCTCTCCTGCACAAAACACACTAAATATTAGAATGAATTCCTTTCTTTAATAAATTAGATTTAGTAGGAAGAATATCATTCATAATATTCCCGCAGCAGATTCTTGTTTTTGTGGAAATTTAGCCTTCCACAGACATTTCCATTTGCGGCTTTGAAGTTCATTATTTGAAGAAGATGCTTCTTCATTGAACTTTGACACGAAGCCCAAGTGGTAAGCATTTTTTACCCAAAACGCCTCTTTTACCGGCCCAAATAGCCTCTTCATTCATGTCCTTCTTATGCTGAATCATCTCCTCGTTCCAAACCCCCCTGGTATTCAAATGGAGGTCACATTATGATCCTTCAACGTAGGTGGATCATAAAGAAGTTTATAACTTCCATCTCTTGGCAGCTAAGGATATGAGTTGATTGATATTGAAAACCCAATTTCCAACTCTCCACTGTATCCCTTTTCAAATAGCTCTCCAAGGATTGTTTCTCAACTTTGCCTTCAAGAAACTGCCCGTTTGAAAATATTTGCCTCTACAACAGACTACTTTGGTTTTTTATAATCCTCCAGCTTTGTTTAGCAAGCATAGCTTGGTTAAACACTCTTTTAAGTCTTTGAAACCCATGCCTCCTTCTCTCTTTCTGGATGCAAAGATTCTTCCAACTAGCTAGTGTATCTTTCTCGATTCTTAATTTGATCGCCTCCAAAACTTCGCATAAAAACCGTTAATCTCATTACATAAAGTCGCAGGGAGCTTGAAGCAACTCAATTTATAGTTTGGTATTGCTTGTGCTTTTGTCTTCCAGAAAAAAGTGTCCTTCCCGCCTTGCAAAGCTTTCCACAATGCATTCTTAACTACCATTGAACTTAAGGAAAAAAAACTTATCTACAAACTGACAACTGTCATATTTTTAATGGACTATTTCTACTGCATTCAATAGTTAAATGAATCAAGGTCTATCTCTACTGCATTCAATAGTTAAATAGATTGGTAAAATATACACCACATCAGAAAGTAATTACGAGCAAGCTCGATAGGTATTTTCTAAAAACAGTCTGAAATTGAAAATTATCTATAGATAGACACAAACACTAAAATTACAAATTTTAAACAGGAAGGGATTAATTAGATTAATTAGCCTCAGTCTAGAACTCAAAAATAATTAGCTTGAAGTTTCTTTTGAACCCAAGAAGGAGACAACACAGGGCTCATGTGATAGAGGTCCCCAAGGCTATTGTAAATGGAGTCCCCCGGCGGAGCGCCACCCTCCCCATAATCCAACCACATTTTGTTTTTGTCGTCACCCAAACCCAAAACTACCTTCACTCTCCACACCTTAAACGTCTGGTCCAAACTCCCACTGTAAACCAAAAAACTGGACACAATGTTTTCCATTTCCACGGTCGCCGCCAGGCACCTCACCGGCCCTCTATGGCCCTCCAGCACCACCACGCATTCATGGCAATAGCCCCCCTCCTGCTTCCTCCATATCCTCACTGTCGTGTCCTCCGACCCGCTCAACACCAGCTTAAGCTTCTCCGCCACCGCAAGACACAGAACCGCGAACCGATGCCCCTGCAACAACCCCATGTGCTTATATCTATACGACTGCTTCTCCTTCTCCCAGAAATTCACAGTCCCGTCGGAGCAGCCGGAGTAAAGAAGCGCGGCGTTGGCATCCAAAACGACAGTGTTTACTGGGGAGGTTTGGAACTTGAGCGTCATGGTGAGGGTGTGGGAGTTGTCCCGGTAGAGCCTCCGCCAGATTTTGACAGTGGCATCGGAGGAGGCGGTGAAGAGGCAGCCATCAGCTTGGTTGAGCGTTAGGGAGTTGACGTGGTCGTCGTGGGCGAGGAAGGAGTTGACGCATTTGCGGTCGGAGAGTCGCCAGGCCTTCACGGTTCTGTCGTGGGAGGCAGTGTAGAGGAGGCCATCGGCGTTGTAGTAACCCATGCAGGAGATGGTGTCTTTGTGAAGCTGTGTGGTTTCGGTTCGAGGCAACAACAGGAACGAGCTTCTTTTTGGGAGGGAACACACCTTTTTGAACCTCAACTTCTCCGAAACTGTGAAATTCCATACTCGGATTCTCAGATCTTTGTGTGATGTCAACAACATGTTTCCTGTTGTTTACACTCCAAATATTAGACTTAAGTCTATAAATTCAAAGACTGTACAGTTGTAATTTAACCTCAAAATTGACACTATAACATTTATTTAAATCTACTTTTAAATGTTTTGGGCTTTATTTCTTTCCTATTATAAATTAGGCCATGATTACAAATTAATCCCAAGTGTGTTTT

mRNA sequence

ATGGCCCTCCAGCACCACCACGCATTCATGGCAATAGCCCCCCTCCTGCTTCCTCCATATCCTCACTGTCGTGTCCTCCGACCCGCTCAACACCAGCTTAAGCTTCTCCGCCACCGCAAGACACAGAACCGCGAACCGATGCCCCTGCAACAACCCCATGTGCTTATATCTATACGACTGCTTCTCCTTCTCCCAGAAATTCACAGTCCCGTCGGAGCAGCCGGAGTAAAGAAGCGCGGCGTTGGCATCCAAAACGACAGTGTTTACTGGGGAGGTTTGGAACTTGAGCGTCATGGTGAGGGTGTGGGAGTTGTCCCGGTAGAGCCTCCGCCAGATTTTGACAGTGGCATCGGAGGAGGCGGTGAAGAGGCAGCCATCAGCTTGGTTGAGCGTTAG

Coding sequence (CDS)

ATGGCCCTCCAGCACCACCACGCATTCATGGCAATAGCCCCCCTCCTGCTTCCTCCATATCCTCACTGTCGTGTCCTCCGACCCGCTCAACACCAGCTTAAGCTTCTCCGCCACCGCAAGACACAGAACCGCGAACCGATGCCCCTGCAACAACCCCATGTGCTTATATCTATACGACTGCTTCTCCTTCTCCCAGAAATTCACAGTCCCGTCGGAGCAGCCGGAGTAAAGAAGCGCGGCGTTGGCATCCAAAACGACAGTGTTTACTGGGGAGGTTTGGAACTTGAGCGTCATGGTGAGGGTGTGGGAGTTGTCCCGGTAGAGCCTCCGCCAGATTTTGACAGTGGCATCGGAGGAGGCGGTGAAGAGGCAGCCATCAGCTTGGTTGAGCGTTAG

Protein sequence

MALQHHHAFMAIAPLLLPPYPHCRVLRPAQHQLKLLRHRKTQNREPMPLQQPHVLISIRLLLLLPEIHSPVGAAGVKKRGVGIQNDSVYWGGLELERHGEGVGVVPVEPPPDFDSGIGGGGEEAAISLVER

Homology

[Close]

BLAST of MC11g_new0123 vs. NCBI nr
Match: GFZ16218.1 (hypothetical protein Acr_25g0006270 [Actinidia rufa])

HSP 1 Score: 73.2 bits (178), Expect = 1.78e-12
Identity = 48/121 (39.67%), Postives = 60/121 (49.59%), Query Frame = 0


Query: 10  MAIAPLLLPPYPHCRVLRPAQHQLKLLRHRKTQNREPMPLQQPHVLISIRLLLLLPEIHS 69
           M   P L PP P+  +LRPA+HQL  L   +TQ+RE +PLQ+P V+     LLLLPE+  
Sbjct: 1   MKTTPFLPPPNPNRCILRPAEHQL--LGRNQTQHRESVPLQEPAVVKPTSYLLLLPEVDE 60

Query: 70  PVGAAGVKKRGVGIQNDSVYWGGLELERHGEGVGVVPVEPPPDFDSGIGGGGEEAAISLV 129
           P                           HGEGV V+P   PPDFD  IG   E A + LV
Sbjct: 61  P--------------------------GHGEGVRVLPSYSPPDFDGPIGRAREHATVVLV 93

[Close]

BLAST of MC11g_new0123 vs. ExPASy TrEMBL
Match: A0A7J0GZQ8 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_25g0006270 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.63e-13
Identity = 48/121 (39.67%), Postives = 60/121 (49.59%), Query Frame = 0


Query: 10  MAIAPLLLPPYPHCRVLRPAQHQLKLLRHRKTQNREPMPLQQPHVLISIRLLLLLPEIHS 69
           M   P L PP P+  +LRPA+HQL  L   +TQ+RE +PLQ+P V+     LLLLPE+  
Sbjct: 1   MKTTPFLPPPNPNRCILRPAEHQL--LGRNQTQHRESVPLQEPAVVKPTSYLLLLPEVDE 60

Query: 70  PVGAAGVKKRGVGIQNDSVYWGGLELERHGEGVGVVPVEPPPDFDSGIGGGGEEAAISLV 129
           P                           HGEGV V+P   PPDFD  IG   E A + LV
Sbjct: 61  P--------------------------GHGEGVRVLPSYSPPDFDGPIGRAREHATVVLV 93

The following BLAST results are available for this feature:

BLAST of MC11g_new0123 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g_new0123 vs. NCBI nr


Match Name	E-value	Identity	Description
GFZ16218.1	1.78e-12	39.67	hypothetical protein Acr_25g0006270 [Actinidia rufa]	[more]

BLAST of MC11g_new0123 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J0GZQ8	8.63e-13	39.67	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_25g0006270 PE=4 SV=1	[more]

BLAST of MC11g_new0123 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g_new0123.1	MC11g_new0123.1	mRNA