MC11g_new0114 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC11g_new0114
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionUnknown protein
LocationMC11: 4833306 .. 4834952 (-)
RNA-Seq ExpressionMC11g_new0114
SyntenyMC11g_new0114
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAACGCAATTTGACTCGGTTGGCGTCCACTTCGATGATATTGATCATATGGTGCAAATCGATCTGGTTATCCTTCCAGTATCGCGCACGACCTTCATCTCCATCGATCGAGATATTGCACTCGATTGTTTACAGAAGAATAGTACGTGCTTTCTCGCACGATCATCTATGTTTTCTCAGACGGAGCTGCAATTTTCTATTTCGAGAAGTCATTATATCTCTCTACTGAGTATTCTCACCCTCTTCCTTTTCAATTCTAAACCACCTGCATGATCATTGTGTTGCAAGAATAGCAACACTGGAAATCTCTACTCTAACTATTACCGTTGTTTACGACATTGTTTACTTGGATCTTTGAACACTAATGTATATAGTTCGAATGAATTGTAGTTTTTTGGACTGATAGCTCCTCTTTTGACCGCTTATCGAACTCAATCTTCTCTAGGAAAAGTAAGCCAACAAAACTAGCAATATCGGCCGTCCATCCTATAAGAAAATTACTAAAGTTTCTGGCAGCCAATAATATCTCCAAAGATACTCGATATATGCCAATCGAGTTAATGAGTGGAGTATTGGAAAGCTGTAGCCAGCAGAATAAGGCAAATGACAGAACTGAGCCTCATAAAATCACGAAGAAGGACAAGAGACTGACCTGAAACCTAAGGTTGTATGACTCGAGAATTTCTATTTCTCAGTATGCACAAATTTCAATCTACGATAAAGTGTACAGTCATAATCGTGACTCAAGGTGCACACTCGCCATAGAATGAATAAAAATCAGGTGAAAGATAAAAGCGATGCTACCAATGTTTTGTCGTACTGGAGATTAATCTATATTATAATGGAGTACGGAACGAATCAATAATTCAGACGGAGAAAAGTAGACGAAGATAAAGGCAAACAGTAGAAGAAGCAGAAGAAGATGAAAATTGTAAGAACCTGGTGCTGGAGTATTCATAGAGCTTGCTGGTGCTGGAGAAGATGATGACTCCTACCTCCGCGTCGCACAAGATCGCAAGTTCTTTCGCCTTCTTCAGCAGTCCGTTCCTACGCTTCGAGAAAGTCACCTGTCTGCTCGTCGAATTGTCGATCCTCCTAATCACAATCTTGCCTCTCCCCATGCTCAGATCCGCAGCTTGATTCTTCTATCCATTTTTTCCCCGAGAAAAGTTACAGAAAATAACAAAACTCCAGTAAATTTCACAAGTAACGAAGATGCAAGGAAAATCGCAACCAAATCCATAAAATACAATAGCTCTATACACTTTTCTTCCTCGAACGCACATAACGAAGAGAGATATATATACATTTACAGCGTGAAATCAAGAAAAAATCCGAAAATAGAGGAAAAACGATGAACACAGAAGAAAACGACGCATCAGTGAATGAAAGAGAAAATGCGCAGGAATTTTGCAGGAAATCGTAACTTACTTGCGGAGGAGTGTGGTGGTTGTTTGGAGTCAAGGCAGCGCAGAAGATCAAACAGAATCGAGAATCGACGTCTTTTTACGGAGCGTTGTACTGAAGCAGATTCACATCATCAGGCATGACCAGCTGCCGCAGCACCATATATGGAAGGTCTGCGTCGTCCATGTGGAGGGCCCAAGCCTCTGGGTTTCTTTCCAGTGCGGGAAGGACCACTAG

mRNA sequence

ATGTTAACGCAATTTGACTCGGTTGGCGTCCACTTCGATGATATTGATCATATGGTGCAAATCGATCTGGTTATCCTTCCAGTATCGCGCACGACCTTCATCTCCATCGATCGAGATATTGCACTCGATTGTTTACAGAAGAATAAGCTTGCTGGTGCTGGAGAAGATGATGACTCCTACCTCCGCGTCGCACAAGATCGCAAGTTCTTTCGCCTTCTTCAGCAGTCCGTTCCTACGCTTCGAGAAAGTCACCTGTCTGCTCGTCGAATTGTCGATCCTCCTAATCACAATCTTGCCTCTCCCCATGCTCAGATCCGCAGCTTGATTCTTCTATCCATTTTTTCCCCGAGAAAAGTTACAGAAAATAACAAAACTCCAGTAAATTTCACAAGAATTTTGCAGGAAATCGTAACTTACTTGCGGAGGAGTGTGGTGGTTGTTTGGAGTCAAGGCAGCGCAGAAGATCAAACAGAATCGAGAATCGACGTCTTTTTACGGAGCGTTGTACTGAAGCAGATTCACATCATCAGGCATGACCAGCTGCCGCAGCACCATATATGGAAGGTCTGCGTCGTCCATGTGGAGGGCCCAAGCCTCTGGGTTTCTTTCCAGTGCGGGAAGGACCACTAG

Coding sequence (CDS)

ATGTTAACGCAATTTGACTCGGTTGGCGTCCACTTCGATGATATTGATCATATGGTGCAAATCGATCTGGTTATCCTTCCAGTATCGCGCACGACCTTCATCTCCATCGATCGAGATATTGCACTCGATTGTTTACAGAAGAATAAGCTTGCTGGTGCTGGAGAAGATGATGACTCCTACCTCCGCGTCGCACAAGATCGCAAGTTCTTTCGCCTTCTTCAGCAGTCCGTTCCTACGCTTCGAGAAAGTCACCTGTCTGCTCGTCGAATTGTCGATCCTCCTAATCACAATCTTGCCTCTCCCCATGCTCAGATCCGCAGCTTGATTCTTCTATCCATTTTTTCCCCGAGAAAAGTTACAGAAAATAACAAAACTCCAGTAAATTTCACAAGAATTTTGCAGGAAATCGTAACTTACTTGCGGAGGAGTGTGGTGGTTGTTTGGAGTCAAGGCAGCGCAGAAGATCAAACAGAATCGAGAATCGACGTCTTTTTACGGAGCGTTGTACTGAAGCAGATTCACATCATCAGGCATGACCAGCTGCCGCAGCACCATATATGGAAGGTCTGCGTCGTCCATGTGGAGGGCCCAAGCCTCTGGGTTTCTTTCCAGTGCGGGAAGGACCACTAG

Protein sequence

MLTQFDSVGVHFDDIDHMVQIDLVILPVSRTTFISIDRDIALDCLQKNKLAGAGEDDDSYLRVAQDRKFFRLLQQSVPTLRESHLSARRIVDPPNHNLASPHAQIRSLILLSIFSPRKVTENNKTPVNFTRILQEIVTYLRRSVVVVWSQGSAEDQTESRIDVFLRSVVLKQIHIIRHDQLPQHHIWKVCVVHVEGPSLWVSFQCGKDH
Homology
[Close]
BLAST of MC11g_new0114 vs. NCBI nr
Match: RRT39898.1 (hypothetical protein B296_00035408 [Ensete ventricosum])

HSP 1 Score: 62.4 bits (150), Expect = 5.61e-09
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 51  AGAGEDDDSYLRVAQDRKFFRLLQQSVPTLRESHLSARRIVDPPNHNLASPH 102
           AGAGEDD + L V +D +   LLQQ VP LRE HL A  +VDP +H+L SPH
Sbjct: 15  AGAGEDDQADLSVTKDGELLGLLQQPVPPLREGHLPAGGVVDPADHDLPSPH 66

[Close]
BLAST of MC11g_new0114 vs. NCBI nr
Match: RWW62664.1 (hypothetical protein BHE74_00030214 [Ensete ventricosum])

HSP 1 Score: 55.5 bits (132), Expect = 2.09e-06
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 0 

Query: 50  LAGAGEDDDSYLRVAQDRKFFRLLQQSVPTLRESHLSARRIVDPPN--HNLASPHAQIRS 108
           L+ AGEDDD +L + +DRKF  LL+Q  P L E HL+ RR++DP +   +   PH   R+
Sbjct: 9   LSTAGEDDDPHLCITEDRKFIGLLEQPSPPLGEGHLAVRRVLDPLDLYFSTTHPHQCCRT 68

[Close]
BLAST of MC11g_new0114 vs. NCBI nr
Match: RWW55010.1 (hypothetical protein BHE74_00038385 [Ensete ventricosum] >RZS05796.1 hypothetical protein BHM03_00036353 [Ensete ventricosum])

HSP 1 Score: 54.3 bits (129), Expect = 2.54e-05
Identity = 28/64 (43.75%), Postives = 37/64 (57.81%), Query Frame = 0 

Query: 51  AGAGEDDDSYLRVAQDRKFFRLLQQSVPTLRESHLSARRIVDPPNHNLASPHAQIRSLIL 110
           A AGEDD+  L VAQD +   LL+Q  P LRE HL    ++DPP  +  SPH  + +   
Sbjct: 46  AAAGEDDERDLGVAQDGQLVGLLEQPAPPLRERHLPVDLVLDPPQLDPPSPHVVVEAEAK 105

Query: 111 LSIF 114
            S+F
Sbjct: 106 PSLF 109

[Close]
BLAST of MC11g_new0114 vs. NCBI nr
Match: KAG6591704.1 (hypothetical protein SDJN03_14050, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 52.4 bits (124), Expect = 3.14e-05
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 0 

Query: 49 KLAGAGEDDDSYLRVAQDRKFFRLLQQSVPTLRE 82
          +   AGEDDDS + VA+DR+FFRLLQQS PTLRE
Sbjct: 21 EFVSAGEDDDSNISVAKDRQFFRLLQQSAPTLRE 54

[Close]
BLAST of MC11g_new0114 vs. ExPASy TrEMBL
Match: A0A426XK36 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00035408 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.71e-09
Identity = 30/52 (57.69%), Postives = 36/52 (69.23%), Query Frame = 0 

Query: 51  AGAGEDDDSYLRVAQDRKFFRLLQQSVPTLRESHLSARRIVDPPNHNLASPH 102
           AGAGEDD + L V +D +   LLQQ VP LRE HL A  +VDP +H+L SPH
Sbjct: 15  AGAGEDDQADLSVTKDGELLGLLQQPVPPLREGHLPAGGVVDPADHDLPSPH 66

[Close]
BLAST of MC11g_new0114 vs. ExPASy TrEMBL
Match: A0A0A9CST9 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.04e-06
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 0 

Query: 54  GEDDDSYLRVAQDRKFFRLLQQSVPTLRESHLSARRIVDPPNHNLASPHAQIRSLILLSI 113
           GEDD+  L VA+D    RLLQQ VP L E HL    ++DPP  +  +PH + R+L L S 
Sbjct: 12  GEDDERDLGVAKDGDLVRLLQQPVPALGEGHLPVDLVLDPPQLHRPAPHPR-RALRLPSR 71

Query: 114 FSPR 117
           + PR
Sbjct: 72  WLPR 74

[Close]
BLAST of MC11g_new0114 vs. ExPASy TrEMBL
Match: A0A5K1DZI3 (Uncharacterized protein OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS22050 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 1.58e-04
Identity = 24/63 (38.10%), Postives = 40/63 (63.49%), Query Frame = 0 

Query: 50  LAGAGEDDDSYLRVAQDRKFFRLLQQSVPTLRESHLSARRIVDPPNHNLASPHAQIRSLI 109
           L  AG+DD+S L +A+D +  RLLQQ VP + E +L    +++PP+ N ++ +A +  + 
Sbjct: 14  LPTAGKDDESDLGIAEDGELMRLLQQPVPPIGERNLPVGGVLNPPHLNTSTSYAHLNVIS 73

Query: 110 LLS 112
            LS
Sbjct: 74  TLS 76

The following BLAST results are available for this feature:
BLAST of MC11g_new0114 vs.
Match NameE-valueIdentityDescription
BLAST of MC11g_new0114 vs. NCBI nr
Match NameE-valueIdentityDescription
RRT39898.15.61e-0957.69hypothetical protein B296_00035408 [Ensete ventricosum][more]
RWW62664.12.09e-0645.90hypothetical protein BHE74_00030214 [Ensete ventricosum][more]
RWW55010.12.54e-0543.75hypothetical protein BHE74_00038385 [Ensete ventricosum] >RZS05796.1 hypothetica... [more]
KAG6591704.13.14e-0570.59hypothetical protein SDJN03_14050, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of MC11g_new0114 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A426XK362.71e-0957.69Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00035408 PE=4 SV=1[more]
A0A0A9CST98.04e-0646.88Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A5K1DZI31.58e-0438.10Uncharacterized protein OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS22050 PE=4 SV... [more]
BLAST of MC11g_new0114 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC11g_new0114.1MC11g_new0114.1mRNA