MC11g_new0003 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0003
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ty3/gypsy retrotransposon protein
Location	MC11: 45699 .. 47531 (-)
RNA-Seq Expression	MC11g_new0003
Synteny	MC11g_new0003

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAGAAGAAAGTTGAAATGAGGGACTGGATGGATGCACTAGTGGAGGAGATGGGCAATGCAGGAAGAATTGCAGCATCCAACAGCATAGAGGGCAAATTGGAGCACTTAGCTATCTCAGAACGTGGTACAAGTGTTGGTAACTCTTGACGTCAATCAAAAGATATTGTTGATCGAACAAAAAACTCCTGAGAATAAAGGTCAGGAGAACCGGAGTATTGTAAATGAATAGAAGAATAAGAATTTGTATTTCAATTAGTTCTCTTGGATACAATACACTGGCTTTTATAGCCACTCAAGCCTTAACAGACCTACGATTAACTTCTATCTAACTAACTGACCATCCATGAGCCTTTAACGGCAACTAACCATATAAAAGGCTTCAACTTCCATAAACTTAGCTGGCAGCCATGACTAACTAAAGCCTTCAACTACTAGTTTATTAAGAGGGAGAATTTATAATAGACTCCCTACATCATAGAGGATGAAGTGGTATTAAAAGGTCTGTCAAAACGGCAATCAGGATTGAGTTAAGAGGAGGAATAGAATAAAAACTAAGGAGCAGAGAAATTTGGTGGAGAAATCCCAAGATTTTGGCATGACATGAGTAGAAAAGGTGGCAGACATGAGGATAGGATTGGAGAGGTATCAAGCATGTAGATGCCAATTTTCTGAGGAAATTATTTTTTAAAATTTTAATAGGAGAGCATTTCTCAGGCAAAAATCTTGGCTCCTGGATATCCATGGCAGAAGATATTTCGTGATTCATGCGTTCTATTGGACATAGAGAAACCATCAGTGGGAGTGGTAAGTTGGAGGGTCCATTGACTAGAGAGTATGTTCATCAATGGGGTCGAATCTAACCGTACGCGCAGAGGTTCGACTCTTATACTCCATTGGGTCAACTCAAATTATGGACATGCTCAATGAATTGAAGTCCATGATCAAGAGGCCCAGGAAAGCAAAGTTCCGCTAGACCATTGCAATGCAAGAGCACAAAGTGCAAGGACTGCTTGACAAAAAGGGTTAAGAATTGATTTTGACCCACACTATAACAATAGAGAAGCAGACTGTTAAAGTATAAATAAATGATTAAATTTACTATGACCCATCAATTTAAGCTTTTGAGTTCAATGGTACTTTAATACAAACTTCAATCTACCACAAATAAATGCTTTAGATGCATCTACTTGAAGTCAAGTTGTAGGAAAAAAGAGTTCCATTGTATTTTGTAATGAGAAGTTTTGAGTGATCACCATTGCCTCAGTCGTGAGCTGAAGTACAGAATGAGCTTGACCAGGAATTGGAGCCTATAGATGAGAGAGGACAGTGTTCCCAGCTGGCAGTGTTGGGGTTAATGGTTGAACTATCACTTGATTTGGTGGTGGGTTCAACCACCCCAGGGACAATGAAAATGAAATGGGAAACTGAAGGGAACGGACTGTTGACGTTGGTGGACAATAAAGCTACCCTCAATTTTATTTTAGATCTGGCGTGCAAGTTGGAAGTCTCGATGGTGGAAACACATATTACAGGGATATCATGGACAAGGGGTGGCATAGGTGGTGCAAGGAATGACAATAACAGAAGATTCTATTGTTGAAACCAAGCACTGATGTCATATTGGGCATGCCATGGTTACAAAGCTCAGAGGAAGTGAATTGGAAGGCCATGACGATGAAATCCTGCCTGCAATACACCACGGTGATACTCCATAGAGATCCCTGCATTCCTGGTCAAGTCATGTTGCCAGAGGACCGGTTTTCCTTTTATGGAATTGTGCAACTTCCCCCTCCAATTAGGCCCAATCTTAGGAGCCTAATGATATGA

mRNA sequence

ATGGCACAGAAGAAAGTTGAAATGAGGGACTGGATGGATGCACTAGTGGAGGAGATGGGCAATGCAGGAAGAATTGCAGCATCCAACAGCATAGAGGGCAAATTGGAGCACTTAGCTATCTCAGAACGTGGTACAAGTGTTGTACAGAATGAGCTTGACCAGGAATTGGAGCCTATAGATGAGAGAGGACAGTGTTCCCAGCTGGCAGTGTTGGGGTTAATGGTTGAACTATCACTTGATTTGGTGGTGGGTTCAACCACCCCAGGGACAATGAAAATGAAATGGGAAACTGAAGGGAACGGACTGTTGACGTTGGTGGACAATAAAGCTACCCTCAATTTTATTTTAGATCTGGCGTGCAAGTTGGAAGTCTCGATGGTGGAAACACATATTACAGGGATATCATGGACAAGGGGTGGCATAGAGGAAGTGAATTGGAAGGCCATGACGATGAAATCCTGCCTGCAATACACCACGGTGATACTCCATAGAGATCCCTGCATTCCTGGTCAAGTCATGTTGCCAGAGGACCGGTTTTCCTTTTATGGAATTGTGCAACTTCCCCCTCCAATTAGGCCCAATCTTAGGAGCCTAATGATATGA

Coding sequence (CDS)

ATGGCACAGAAGAAAGTTGAAATGAGGGACTGGATGGATGCACTAGTGGAGGAGATGGGCAATGCAGGAAGAATTGCAGCATCCAACAGCATAGAGGGCAAATTGGAGCACTTAGCTATCTCAGAACGTGGTACAAGTGTTGTACAGAATGAGCTTGACCAGGAATTGGAGCCTATAGATGAGAGAGGACAGTGTTCCCAGCTGGCAGTGTTGGGGTTAATGGTTGAACTATCACTTGATTTGGTGGTGGGTTCAACCACCCCAGGGACAATGAAAATGAAATGGGAAACTGAAGGGAACGGACTGTTGACGTTGGTGGACAATAAAGCTACCCTCAATTTTATTTTAGATCTGGCGTGCAAGTTGGAAGTCTCGATGGTGGAAACACATATTACAGGGATATCATGGACAAGGGGTGGCATAGAGGAAGTGAATTGGAAGGCCATGACGATGAAATCCTGCCTGCAATACACCACGGTGATACTCCATAGAGATCCCTGCATTCCTGGTCAAGTCATGTTGCCAGAGGACCGGTTTTCCTTTTATGGAATTGTGCAACTTCCCCCTCCAATTAGGCCCAATCTTAGGAGCCTAATGATATGA

Protein sequence

MAQKKVEMRDWMDALVEEMGNAGRIAASNSIEGKLEHLAISERGTSVVQNELDQELEPIDERGQCSQLAVLGLMVELSLDLVVGSTTPGTMKMKWETEGNGLLTLVDNKATLNFILDLACKLEVSMVETHITGISWTRGGIEEVNWKAMTMKSCLQYTTVILHRDPCIPGQVMLPEDRFSFYGIVQLPPPIRPNLRSLMI

Homology

[Close]

BLAST of MC11g_new0003 vs. NCBI nr
Match: KAA0062470.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27412.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 5.22e-07
Identity = 54/175 (30.86%), Postives = 82/175 (46.86%), Query Frame = 0


Query: 3   QKKVEMRDWMDALVEEMGNAGRIAASNSIEGKLEHLAISERGTSVVQNEL-DQELEPIDE 62
           Q++   R W ++ ++   + G     +    K       E    VV ++L D E+E    
Sbjct: 114 QRENNFRRWTNSELQAQRDKGLCYRCDEPFSKGHRCKNKEFRLCVVADDLEDIEMEDSTH 173

Query: 63  RGQCSQLAVLGLMVELSLDLVVGSTTPGTMKMKWETEGNGLLTLVDNKATLNFI-LDLAC 122
            G+  +++ +   VELSL+ VVG T PGT K+K   +   ++ +VD  A  NFI L L  
Sbjct: 174 EGEMVEVSSV---VELSLNSVVGLTAPGTFKVKGTVDDREIVIMVDCGAIHNFISLKLVE 233

Query: 123 KLEVSMVETHITGISWTRG-------GIEEVNWKAMTMKSCLQYTTVILHRDPCI 168
            L + M ET    + W  G       G   V+WKA+TM   +  T VIL  DP +
Sbjct: 234 SLNLPMAETTNYAV-WKSGASGLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSL 284

[Close]

BLAST of MC11g_new0003 vs. NCBI nr
Match: XP_022881659.1 (uncharacterized protein LOC111398794 [Olea europaea var. sylvestris])

HSP 1 Score: 58.9 bits (141), Expect = 2.30e-06
Identity = 47/144 (32.64%), Postives = 75/144 (52.08%), Query Frame = 0


Query: 47  VVQNELDQELEPIDERGQCSQLAVLGLMVELSLDLVVGSTTPGTMKMKWETEGNGLLTLV 106
           +V  E ++ELE ++E   CS+L      VELS++ VVG T+P TMK+K + EG  ++ L+
Sbjct: 145 LVDEEEERELERLEEIIDCSELEG----VELSMNSVVGLTSPKTMKVKGKVEGEDVVVLI 204

Query: 107 DNKATLNFIL-DLACKLEVSMVETHITGISWTRGGIEEVNWKAMTMKSCLQYTTVILHRD 166
           D+ AT NFI  +L  KL + + ET+   +    G   +   K   +   +Q+  V+    
Sbjct: 205 DSGATHNFISWELIRKLNLPITETNGYQVQVGTGIAVKGKGKCQGVVFYMQFVLVVEDYL 264

Query: 167 PCIPGQ--VMLPEDRFSFYGIVQL 187
           P   G   ++L     S  G VQ+
Sbjct: 265 PIELGSSDMILGMQWLSTLGTVQV 284

[Close]

BLAST of MC11g_new0003 vs. NCBI nr
Match: KAA0037057.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK06592.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 6.81e-06
Identity = 47/150 (31.33%), Postives = 70/150 (46.67%), Query Frame = 0


Query: 38  LAISERGTSVVQNELDQELEPIDERGQCSQLAVLGLMVELSLDLVVGSTTPGTMKMKWET 97
           L + E G  +V  E ++  +   E  Q     V  L +ELSL+ VVG T PGTMK+K   
Sbjct: 2   LVVREGGEELVIVE-EEFFDAETEMKQVEVQNVENLNIELSLNSVVGLTNPGTMKVKGRV 61

Query: 98  EGNGLLTLVDNKATLNFILD-LACKLEVSMVETH-----------------ITGISWTRG 157
               ++ L+D  AT NFI + L  KL +++ ET                  I G+ W   
Sbjct: 62  GEEEVVILIDCGATHNFIAEKLVTKLRLTLQETPNYGVILGSRTALGGVDMILGMQWLHS 121

Query: 158 -GIEEVNWKAMTMKSCLQYTTVILHRDPCI 168
            G+ EV+WK + +    Q   V++  DP +
Sbjct: 122 LGVTEVDWKKLMLTFHHQGRKVVIKGDPSL 150

[Close]

BLAST of MC11g_new0003 vs. NCBI nr
Match: KAA0061363.1 (peroxidase 64 [Cucumis melo var. makuwa] >TYK14718.1 peroxidase 64 [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 1.26e-05
Identity = 36/111 (32.43%), Postives = 59/111 (53.15%), Query Frame = 0


Query: 74  MVELSLDLVVGSTTPGTMKMKWETEGNGLLTLVDNKATLNFILD-LACKLEVSMVETHIT 133
           +VELS++ +VG T PGTMK++ + +G  ++ L+D  AT NFILD L  ++++   ET   
Sbjct: 94  VVELSINSLVGLTNPGTMKVRGKLQGEEVVILIDCGATHNFILDKLVNEMKLHTKETSHY 153

Query: 134 GISWTRG---------------GIEEVNWKAMTMKSCLQYTTVILHRDPCI 168
           G+    G               G+ E +W+ +TM    +   +I+  DP I
Sbjct: 154 GVIQGSGAAIKGKGCMQWLYSLGVTETDWRNLTMTFVHEGKKIIIKGDPSI 204

[Close]

BLAST of MC11g_new0003 vs. NCBI nr
Match: PKU67640.1 (hypothetical protein MA16_Dca011218 [Dendrobium catenatum])

HSP 1 Score: 54.7 bits (130), Expect = 6.29e-05
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 74  MVELSLDLVVGSTTPGTMKMKWETEGNGLLTLVDNKATLNFI-LDLACKLEVSMVETHIT 133
           + E+SL+ VVG TT  TMK+K E EG  ++ L+D+ ATLNFI   +  +L V +VET   
Sbjct: 264 LAEVSLNSVVGFTTNHTMKVKGEIEGKEVVVLIDSGATLNFISTQVVDQLRVKLVETGYY 323

Query: 134 GISWTRGGIEEVNW 146
           G+      +E+  W
Sbjct: 324 GVIMGTWKVEKGQW 337

[Close]

BLAST of MC11g_new0003 vs. ExPASy TrEMBL
Match: A0A5A7V5G0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001010 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.53e-07
Identity = 54/175 (30.86%), Postives = 82/175 (46.86%), Query Frame = 0


Query: 3   QKKVEMRDWMDALVEEMGNAGRIAASNSIEGKLEHLAISERGTSVVQNEL-DQELEPIDE 62
           Q++   R W ++ ++   + G     +    K       E    VV ++L D E+E    
Sbjct: 114 QRENNFRRWTNSELQAQRDKGLCYRCDEPFSKGHRCKNKEFRLCVVADDLEDIEMEDSTH 173

Query: 63  RGQCSQLAVLGLMVELSLDLVVGSTTPGTMKMKWETEGNGLLTLVDNKATLNFI-LDLAC 122
            G+  +++ +   VELSL+ VVG T PGT K+K   +   ++ +VD  A  NFI L L  
Sbjct: 174 EGEMVEVSSV---VELSLNSVVGLTAPGTFKVKGTVDDREIVIMVDCGAIHNFISLKLVE 233

Query: 123 KLEVSMVETHITGISWTRG-------GIEEVNWKAMTMKSCLQYTTVILHRDPCI 168
            L + M ET    + W  G       G   V+WKA+TM   +  T VIL  DP +
Sbjct: 234 SLNLPMAETTNYAV-WKSGASGLQKQGAMTVDWKALTMTFVVGDTKVILKGDPSL 284

[Close]

BLAST of MC11g_new0003 vs. ExPASy TrEMBL
Match: A0A5A7T671 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00600 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.30e-06
Identity = 47/150 (31.33%), Postives = 70/150 (46.67%), Query Frame = 0


Query: 38  LAISERGTSVVQNELDQELEPIDERGQCSQLAVLGLMVELSLDLVVGSTTPGTMKMKWET 97
           L + E G  +V  E ++  +   E  Q     V  L +ELSL+ VVG T PGTMK+K   
Sbjct: 2   LVVREGGEELVIVE-EEFFDAETEMKQVEVQNVENLNIELSLNSVVGLTNPGTMKVKGRV 61

Query: 98  EGNGLLTLVDNKATLNFILD-LACKLEVSMVETH-----------------ITGISWTRG 157
               ++ L+D  AT NFI + L  KL +++ ET                  I G+ W   
Sbjct: 62  GEEEVVILIDCGATHNFIAEKLVTKLRLTLQETPNYGVILGSRTALGGVDMILGMQWLHS 121

Query: 158 -GIEEVNWKAMTMKSCLQYTTVILHRDPCI 168
            G+ EV+WK + +    Q   V++  DP +
Sbjct: 122 LGVTEVDWKKLMLTFHHQGRKVVIKGDPSL 150

[Close]

BLAST of MC11g_new0003 vs. ExPASy TrEMBL
Match: A0A5D3CU29 (Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00500 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 6.08e-06
Identity = 36/111 (32.43%), Postives = 59/111 (53.15%), Query Frame = 0


Query: 74  MVELSLDLVVGSTTPGTMKMKWETEGNGLLTLVDNKATLNFILD-LACKLEVSMVETHIT 133
           +VELS++ +VG T PGTMK++ + +G  ++ L+D  AT NFILD L  ++++   ET   
Sbjct: 94  VVELSINSLVGLTNPGTMKVRGKLQGEEVVILIDCGATHNFILDKLVNEMKLHTKETSHY 153

Query: 134 GISWTRG---------------GIEEVNWKAMTMKSCLQYTTVILHRDPCI 168
           G+    G               G+ E +W+ +TM    +   +I+  DP I
Sbjct: 154 GVIQGSGAAIKGKGCMQWLYSLGVTETDWRNLTMTFVHEGKKIIIKGDPSI 204

[Close]

BLAST of MC11g_new0003 vs. ExPASy TrEMBL
Match: A0A2I0VW42 (Retrotrans_gag domain-containing protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca011218 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.05e-05
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 74  MVELSLDLVVGSTTPGTMKMKWETEGNGLLTLVDNKATLNFI-LDLACKLEVSMVETHIT 133
           + E+SL+ VVG TT  TMK+K E EG  ++ L+D+ ATLNFI   +  +L V +VET   
Sbjct: 264 LAEVSLNSVVGFTTNHTMKVKGEIEGKEVVVLIDSGATLNFISTQVVDQLRVKLVETGYY 323

Query: 134 GISWTRGGIEEVNW 146
           G+      +E+  W
Sbjct: 324 GVIMGTWKVEKGQW 337

[Close]

BLAST of MC11g_new0003 vs. ExPASy TrEMBL
Match: F6GVT4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0083g00660 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.11e-05
Identity = 51/167 (30.54%), Postives = 75/167 (44.91%), Query Frame = 0


Query: 52  LDQELEPIDERGQCSQ---LAVLGLMVELSLDLVVGSTTPGTMKMKWETEGNGLLTLVDN 111
           LD+E E     G+ ++   L  L  +VELSL+ VVG TTPGTMK+K       ++ LVD+
Sbjct: 9   LDEEEEDNQFDGRATEEPALIELKDVVELSLNSVVGLTTPGTMKIKGTIRSKEVIILVDS 68

Query: 112 KATLNFI-LDLACKLEV----------------------------------SMVETH--- 168
            AT NF+ L+L  +L +                                  ++VE     
Sbjct: 69  GATHNFLSLELVQQLALPLTTITSYGVMMGIGISMKGKGICRGVCISMQGLTVVEDFLPL 128

The following BLAST results are available for this feature:

BLAST of MC11g_new0003 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g_new0003 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062470.1	5.22e-07	30.86	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK27412.1 Ty3/gyp...	[more]
XP_022881659.1	2.30e-06	32.64	uncharacterized protein LOC111398794 [Olea europaea var. sylvestris]	[more]
KAA0037057.1	6.81e-06	31.33	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK06592.1 Ty3/gyp...	[more]
KAA0061363.1	1.26e-05	32.43	peroxidase 64 [Cucumis melo var. makuwa] >TYK14718.1 peroxidase 64 [Cucumis melo...	[more]
PKU67640.1	6.29e-05	41.89	hypothetical protein MA16_Dca011218 [Dendrobium catenatum]	[more]

BLAST of MC11g_new0003 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5G0	2.53e-07	30.86	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T671	3.30e-06	31.33	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CU29	6.08e-06	32.43	Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00500 ...	[more]
A0A2I0VW42	3.05e-05	41.89	Retrotrans_gag domain-containing protein OS=Dendrobium catenatum OX=906689 GN=MA...	[more]
F6GVT4	4.11e-05	30.54	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0083g00660 PE=4 SV=...	[more]

BLAST of MC11g_new0003 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g_new0003.1	MC11g_new0003.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003824	catalytic activity