MC11g_new0002 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g_new0002
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	MC11: 24569 .. 25506 (-)
RNA-Seq Expression	MC11g_new0002
Synteny	MC11g_new0002

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGGACAATGCTCCTAAATTGTCTTCTGTTGAGTTTTTCCAGACCAAAGGTGTTCTTCATCAGTTCTCTTGTGTTAGCCGCCCTGAGCAAAACTCAGTCGTTGAGAGAAAACACCAGCATCTGTTGAATGTGGCTCGTTCCCTTCTTTTTTCAGTCTTGGTTCCCATCCAATTTTGGGGAGAATGTGTTCTTACAACATCTTTCTTTCCTGATTAATCGAACTCCTTCACTCCTACATTGGAACACTCCGTTTGCTTGTTTATATGGTAAACGAGCTAATTACTCGTCTCTTCGAGTTTTTGGATGTCTGTGTTTTGCATCCACATCTCCTCACAATCGGTCCAAGTTTCATCCAAGGAGTGCTTCCTACTGTTTTCCTTGGCTATCCTCCAGCAGTGAAGGGCTACCGTCTCTTTGAAATTGAACACAACAAATTTTTTATCTCCCGAGATGTGGTGTTCCATGAAGATGTGTTTCCGTTTCATACTATCAATCTGGGAGAACAGTTTTTGGATCCATTTTCTGATATTGATCTACCAAAGTCACTTGATTTTTCAGGCATACCTACTGGTTCTGATGCTCCATTGCCTCATAATACTGTTATGCCTCCAGTTGGTGCCACTGTTGAGCCTGATTTTGTTAGTTCTCCTGCTGTTGCTTCTTCTACTGATGCTAATGATTTGGCCATTGTGACTGATTCCAGAACTGGTGTTGTAGTTCCTAATGAGGTGCTTGGTGTTCCTTTTGGTTCATCCACTGATATACCACCTCCTACTGATGTTGATACTCATGTGCCTGCTTCTGCTAGTCCTTCTACTAATGATGAGTCCACTGATTTACTTGGCTCTCTAGAATTGTTCCTACACCAGTCATTCGAAGGTCTAGTCGGCAGTCTCACCCTCCTCCTTATTTGAGGCACTACCATTGTGGTTTAATC

mRNA sequence

ATGGTAAACGAGCTAATTACTCGTCTCTTCGAGTTTTTGGATGTCTGTGTTTTGCATCCACATCTCCTCACAATCGGTCCAAGTTTCATCCAAGGAGTGCTTCCTACTGTTTTCCTTGGCTATCCTCCAGCAGTGAAGGGCTACCGTCTCTTTGAAATTGAACACAACAAATTTTTTATCTCCCGAGATGTGGTGTTCCATGAAGATGTGTTTCCGTTTCATACTATCAATCTGGGAGAACAGTTTTTGGATCCATTTTCTGATATTGATCTACCAAAGTCACTTGATTTTTCAGGCATACCTACTGGTTCTGATGCTCCATTGCCTCATAATACTGTTATGCCTCCAGTTGGTGCCACTGTTGAGCCTGATTTTGTTAGTTCTCCTGCTGTTGCTTCTTCTACTGATGCTAATGATTTGGCCATTGTGACTGATTCCAGAACTGGTGTTGTAGTTCCTAATGAGGTGCTTGGTGTTCCTTTTGGTTCATCCACTGATATACCACCTCCTACTGATGTTGATACTCATGTGCCTGCTTCTGCTAGTCCTTCTACTAATGATGAGTCCACTGATTTACTTGGCTCTCTAGAATTGTTCCTACACCAGTCATTCGAAGGTCTAGTCGGCAGTCTCACCCTCCTCCTTATTTGA

Coding sequence (CDS)

ATGGTAAACGAGCTAATTACTCGTCTCTTCGAGTTTTTGGATGTCTGTGTTTTGCATCCACATCTCCTCACAATCGGTCCAAGTTTCATCCAAGGAGTGCTTCCTACTGTTTTCCTTGGCTATCCTCCAGCAGTGAAGGGCTACCGTCTCTTTGAAATTGAACACAACAAATTTTTTATCTCCCGAGATGTGGTGTTCCATGAAGATGTGTTTCCGTTTCATACTATCAATCTGGGAGAACAGTTTTTGGATCCATTTTCTGATATTGATCTACCAAAGTCACTTGATTTTTCAGGCATACCTACTGGTTCTGATGCTCCATTGCCTCATAATACTGTTATGCCTCCAGTTGGTGCCACTGTTGAGCCTGATTTTGTTAGTTCTCCTGCTGTTGCTTCTTCTACTGATGCTAATGATTTGGCCATTGTGACTGATTCCAGAACTGGTGTTGTAGTTCCTAATGAGGTGCTTGGTGTTCCTTTTGGTTCATCCACTGATATACCACCTCCTACTGATGTTGATACTCATGTGCCTGCTTCTGCTAGTCCTTCTACTAATGATGAGTCCACTGATTTACTTGGCTCTCTAGAATTGTTCCTACACCAGTCATTCGAAGGTCTAGTCGGCAGTCTCACCCTCCTCCTTATTTGA

Protein sequence

MVNELITRLFEFLDVCVLHPHLLTIGPSFIQGVLPTVFLGYPPAVKGYRLFEIEHNKFFISRDVVFHEDVFPFHTINLGEQFLDPFSDIDLPKSLDFSGIPTGSDAPLPHNTVMPPVGATVEPDFVSSPAVASSTDANDLAIVTDSRTGVVVPNEVLGVPFGSSTDIPPPTDVDTHVPASASPSTNDESTDLLGSLELFLHQSFEGLVGSLTLLLI

Homology

[Close]

BLAST of MC11g_new0002 vs. NCBI nr
Match: XP_022150390.1 (uncharacterized protein LOC111018564 isoform X2 [Momordica charantia])

HSP 1 Score: 102 bits (255), Expect = 2.43e-22
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 28  SFIQGVLPTVFLGYPPAVKGYRLFEIEHNKFFISRDVVFHEDVFPFHTINLGEQFLDPFS 87
            F   V+P VF+GYP  VKGYRLF+IEH KFF+SRDVVFHE +FPF +I+L    +DPF 
Sbjct: 7   KFHPRVIPYVFVGYPLGVKGYRLFDIEHIKFFLSRDVVFHEQIFPFSSISLPTDSVDPFP 66

Query: 88  DIDLPKSLDFSGIPTGSDAPLPHN 111
           D  LPK+ DF   P+G  + LPHN
Sbjct: 67  DFVLPKAFDFVSSPSGVSS-LPHN 89

[Close]

BLAST of MC11g_new0002 vs. NCBI nr
Match: XP_022150388.1 (uncharacterized protein LOC111018564 isoform X1 [Momordica charantia] >XP_022150389.1 uncharacterized protein LOC111018564 isoform X1 [Momordica charantia])

HSP 1 Score: 102 bits (255), Expect = 5.14e-22
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 28  SFIQGVLPTVFLGYPPAVKGYRLFEIEHNKFFISRDVVFHEDVFPFHTINLGEQFLDPFS 87
            F   V+P VF+GYP  VKGYRLF+IEH KFF+SRDVVFHE +FPF +I+L    +DPF 
Sbjct: 7   KFHPRVIPYVFVGYPLGVKGYRLFDIEHIKFFLSRDVVFHEQIFPFSSISLPTDSVDPFP 66

Query: 88  DIDLPKSLDFSGIPTGSDAPLPHN 111
           D  LPK+ DF   P+G  + LPHN
Sbjct: 67  DFVLPKAFDFVSSPSGVSS-LPHN 89

[Close]

BLAST of MC11g_new0002 vs. NCBI nr
Match: XP_022154919.1 (uncharacterized protein LOC111022065 [Momordica charantia])

HSP 1 Score: 102 bits (254), Expect = 4.96e-21
Identity = 55/138 (39.86%), Postives = 84/138 (60.87%), Query Frame = 0


Query: 28  SFIQGVLPTVFLGYPPAVKGYRLFEIEHNKFFISRDVVFHEDVFPFHTINLGEQFLDPFS 87
            F    L +VF+GYPP +KGY+L++IE+ +FF+SRDV+FHE +FPFHT+++    +DPF 
Sbjct: 499 KFHPRALTSVFVGYPPGMKGYKLYDIENKRFFVSRDVIFHESIFPFHTVSVNSPIVDPFP 558

Query: 88  DIDLPKSLDFSGIPTGSDAPLPHN-----TVMPPVGATVEPDFV---SSPA-VASSTDAN 147
            + +PKS D   + T S AP  H+     + + P  A + P  V    SP  VA+ +DAN
Sbjct: 559 GVVIPKSYDL--VDTSSGAPDDHHNYATGSAVSPTSADISPTVVIPDGSPIMVANESDAN 618

Query: 148 DLAIVTDSRTGVVVPNEV 156
              I+  + + ++ PN V
Sbjct: 619 GSPILVANESNIM-PNIV 633

[Close]

BLAST of MC11g_new0002 vs. NCBI nr
Match: XP_022150855.1 (uncharacterized protein LOC111018899 [Momordica charantia])

HSP 1 Score: 85.1 bits (209), Expect = 2.74e-15
Identity = 49/120 (40.83%), Postives = 60/120 (50.00%), Query Frame = 0


Query: 16  CVLHPHLLTIGPSFIQG-VLPTVFLGYPPAVKGYRLFEIEHNKFFISRDVVFHEDVFPFH 75
           C+     LT   S  Q   +P +F  YPP +K YRL++I + KFFISRDVVFHEDVFPFH
Sbjct: 36  CLCFASTLTANRSKFQSRAVPAIFTEYPPGIKAYRLYDITNQKFFISRDVVFHEDVFPFH 95

Query: 76  TINLGEQFLDPFSDIDLPKSL----DFSGIPTGSDAPLPHNTVMPPVGATVEPDFVSSPA 130
            +   +   DPF     PK L    D S +PT S        +    G T  P     PA
Sbjct: 96  KVTEKDGISDPFHGFVSPKVLHCGSDLSHLPTNSSVVQSDGCLRTFYGHTASPLVCKDPA 155

[Close]

BLAST of MC11g_new0002 vs. NCBI nr
Match: MCI08559.1 (putative retroelement pol polyprotein [Trifolium medium])

HSP 1 Score: 80.9 bits (198), Expect = 1.33e-14
Identity = 42/105 (40.00%), Postives = 59/105 (56.19%), Query Frame = 0


Query: 34  LPTVFLGYPPAVKGYRLFEIEHNKFFISRDVVFHEDVFPFHTINLGEQFLDPFSDIDLPK 93
           +P VFLGYP   KG++++++    F +SRD VFHED FPFH+I+     +DPFS + LP 
Sbjct: 20  VPCVFLGYPTGYKGFKVYDLNSKTFHVSRDTVFHEDSFPFHSISQINNHVDPFSQLVLP- 79

Query: 94  SLDFSGIPTGSDAPLPHNTVMPPVGATVE---PDFVSSPAVASST 135
                 +P      + HNT + P+   V    PDF SS    S+T
Sbjct: 80  ------VPINDHHSVDHNTCIDPINHDVPNNPPDFASSDQSNSNT 117

[Close]

BLAST of MC11g_new0002 vs. ExPASy TrEMBL
Match: A0A6J1D8C2 (uncharacterized protein LOC111018564 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111018564 PE=4 SV=1)

HSP 1 Score: 102 bits (255), Expect = 1.18e-22
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 28  SFIQGVLPTVFLGYPPAVKGYRLFEIEHNKFFISRDVVFHEDVFPFHTINLGEQFLDPFS 87
            F   V+P VF+GYP  VKGYRLF+IEH KFF+SRDVVFHE +FPF +I+L    +DPF 
Sbjct: 7   KFHPRVIPYVFVGYPLGVKGYRLFDIEHIKFFLSRDVVFHEQIFPFSSISLPTDSVDPFP 66

Query: 88  DIDLPKSLDFSGIPTGSDAPLPHN 111
           D  LPK+ DF   P+G  + LPHN
Sbjct: 67  DFVLPKAFDFVSSPSGVSS-LPHN 89

[Close]

BLAST of MC11g_new0002 vs. ExPASy TrEMBL
Match: A0A6J1D9X8 (uncharacterized protein LOC111018564 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018564 PE=4 SV=1)

HSP 1 Score: 102 bits (255), Expect = 2.49e-22
Identity = 49/84 (58.33%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 28  SFIQGVLPTVFLGYPPAVKGYRLFEIEHNKFFISRDVVFHEDVFPFHTINLGEQFLDPFS 87
            F   V+P VF+GYP  VKGYRLF+IEH KFF+SRDVVFHE +FPF +I+L    +DPF 
Sbjct: 7   KFHPRVIPYVFVGYPLGVKGYRLFDIEHIKFFLSRDVVFHEQIFPFSSISLPTDSVDPFP 66

Query: 88  DIDLPKSLDFSGIPTGSDAPLPHN 111
           D  LPK+ DF   P+G  + LPHN
Sbjct: 67  DFVLPKAFDFVSSPSGVSS-LPHN 89

[Close]

BLAST of MC11g_new0002 vs. ExPASy TrEMBL
Match: A0A6J1DNP7 (uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022065 PE=4 SV=1)

HSP 1 Score: 102 bits (254), Expect = 2.40e-21
Identity = 55/138 (39.86%), Postives = 84/138 (60.87%), Query Frame = 0


Query: 28  SFIQGVLPTVFLGYPPAVKGYRLFEIEHNKFFISRDVVFHEDVFPFHTINLGEQFLDPFS 87
            F    L +VF+GYPP +KGY+L++IE+ +FF+SRDV+FHE +FPFHT+++    +DPF 
Sbjct: 499 KFHPRALTSVFVGYPPGMKGYKLYDIENKRFFVSRDVIFHESIFPFHTVSVNSPIVDPFP 558

Query: 88  DIDLPKSLDFSGIPTGSDAPLPHN-----TVMPPVGATVEPDFV---SSPA-VASSTDAN 147
            + +PKS D   + T S AP  H+     + + P  A + P  V    SP  VA+ +DAN
Sbjct: 559 GVVIPKSYDL--VDTSSGAPDDHHNYATGSAVSPTSADISPTVVIPDGSPIMVANESDAN 618

Query: 148 DLAIVTDSRTGVVVPNEV 156
              I+  + + ++ PN V
Sbjct: 619 GSPILVANESNIM-PNIV 633

[Close]

BLAST of MC11g_new0002 vs. ExPASy TrEMBL
Match: A0A6J1D9M2 (uncharacterized protein LOC111018899 OS=Momordica charantia OX=3673 GN=LOC111018899 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.33e-15
Identity = 49/120 (40.83%), Postives = 60/120 (50.00%), Query Frame = 0


Query: 16  CVLHPHLLTIGPSFIQG-VLPTVFLGYPPAVKGYRLFEIEHNKFFISRDVVFHEDVFPFH 75
           C+     LT   S  Q   +P +F  YPP +K YRL++I + KFFISRDVVFHEDVFPFH
Sbjct: 36  CLCFASTLTANRSKFQSRAVPAIFTEYPPGIKAYRLYDITNQKFFISRDVVFHEDVFPFH 95

Query: 76  TINLGEQFLDPFSDIDLPKSL----DFSGIPTGSDAPLPHNTVMPPVGATVEPDFVSSPA 130
            +   +   DPF     PK L    D S +PT S        +    G T  P     PA
Sbjct: 96  KVTEKDGISDPFHGFVSPKVLHCGSDLSHLPTNSSVVQSDGCLRTFYGHTASPLVCKDPA 155

[Close]

BLAST of MC11g_new0002 vs. ExPASy TrEMBL
Match: A0A2N9GUQ2 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS30973 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.59e-15
Identity = 49/129 (37.98%), Postives = 76/129 (58.91%), Query Frame = 0


Query: 37  VFLGYPPAVKGYRLFEIEHNKFFISRDVVFHEDVFPFHTINLGEQFLDPFSDIDLPKSLD 96
           VFLGYP AVKGY++ ++  +K F+SRDV+FHE +FPFH +      +DPFS + LP  +D
Sbjct: 755 VFLGYPYAVKGYKVMDLTTHKIFVSRDVIFHESIFPFHNLKSITSQIDPFSTLVLPHYID 814

Query: 97  F------SGIPT-GSDAPLPHNTVMPPVGATVEP--DFVSSPAVASSTDANDLAIVTDSR 156
                  S +PT  S++P+P +T +     T  P  D +SSP++ S+   +D  +  DS 
Sbjct: 815 EEHTSFQSMMPTFSSNSPIPADTSLSLADHTAFPIPDSMSSPSIDSNNSISDTTL--DSA 874

The following BLAST results are available for this feature:

BLAST of MC11g_new0002 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g_new0002 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150390.1	2.43e-22	58.33	uncharacterized protein LOC111018564 isoform X2 [Momordica charantia]	[more]
XP_022150388.1	5.14e-22	58.33	uncharacterized protein LOC111018564 isoform X1 [Momordica charantia] >XP_022150...	[more]
XP_022154919.1	4.96e-21	39.86	uncharacterized protein LOC111022065 [Momordica charantia]	[more]
XP_022150855.1	2.74e-15	40.83	uncharacterized protein LOC111018899 [Momordica charantia]	[more]
MCI08559.1	1.33e-14	40.00	putative retroelement pol polyprotein [Trifolium medium]	[more]

BLAST of MC11g_new0002 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D8C2	1.18e-22	58.33	uncharacterized protein LOC111018564 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1D9X8	2.49e-22	58.33	uncharacterized protein LOC111018564 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1DNP7	2.40e-21	39.86	uncharacterized protein LOC111022065 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1D9M2	1.33e-15	40.83	uncharacterized protein LOC111018899 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A2N9GUQ2	4.59e-15	37.98	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]

BLAST of MC11g_new0002 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 161..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g_new0002.1	MC11g_new0002.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0016020	membrane