MC11g1449 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC11g1449
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationMC11: 19331954 .. 19332109 (-)
RNA-Seq ExpressionMC11g1449
SyntenyMC11g1449
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCGGGAAACTGAAAGAGGGAGAAGAACTTATTAACAGTATGGCAATTGAAGGCTTCTTTCTTGCAGCTTGTAGAGTACATGGAGATATTGAAATTGGGAAAATAGCAGCGAAAAAGGTGATGGAGTTGAAGCCATATGGTACTGGTGCTTTTGTG

mRNA sequence

TGCGGGAAACTGAAAGAGGGAGAAGAACTTATTAACAGTATGGCAATTGAAGGCTTCTTTCTTGCAGCTTGTAGAGTACATGGAGATATTGAAATTGGGAAAATAGCAGCGAAAAAGGTGATGGAGTTGAAGCCATATGGTACTGGTGCTTTTGTG

Coding sequence (CDS)

TGCGGGAAACTGAAAGAGGGAGAAGAACTTATTAACAGTATGGCAATTGAAGGCTTCTTTCTTGCAGCTTGTAGAGTACATGGAGATATTGAAATTGGGAAAATAGCAGCGAAAAAGGTGATGGAGTTGAAGCCATATGGTACTGGTGCTTTTGTG

Protein sequence

CGKLKEGEELINSMAIEGFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV
Homology
[Close]
BLAST of MC11g1449 vs. ExPASy Swiss-Prot
Match: Q9CA56 (Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E69 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-09
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 0 

Query: 2   GKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV 53
           G+L+E E  IN+M I+      G  LAAC++HG++E+GK+AAKK +EL+P   GA++
Sbjct: 803 GRLREAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYI 859

[Close]
BLAST of MC11g1449 vs. ExPASy Swiss-Prot
Match: O23337 (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.1e-06
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 0 

Query: 4   LKEGEELINSM------AIEGFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV 53
           L+E  E+I SM       I G  ++ACR+HG++E+GK AAK+++EL+P   GA V
Sbjct: 497 LREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALV 551

[Close]
BLAST of MC11g1449 vs. ExPASy Swiss-Prot
Match: Q9SHZ8 (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H41 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.1e-06
Identity = 24/56 (42.86%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 2   GKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAF 52
           G L+E +E I  M IE      G  L+ACRVH +I++GK+AA++++ L+P  +GA+
Sbjct: 565 GLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAY 620

[Close]
BLAST of MC11g1449 vs. ExPASy Swiss-Prot
Match: Q9SJZ3 (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 5.3e-06
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 0 

Query: 2   GKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV 53
           G L+E + L+ SM +E      G  L  CR+HG++E+G+ AAKK++EL P  +G +V
Sbjct: 540 GLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYV 596

[Close]
BLAST of MC11g1449 vs. ExPASy Swiss-Prot
Match: Q9SMZ2 (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H53 PE=3 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 6.9e-06
Identity = 26/57 (45.61%), Postives = 35/57 (61.40%), Query Frame = 0 

Query: 2   GKLKEGEELINSMAIEG------FFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV 53
           G +K+ E LI SM++E         LAACRV GD E GK  A K++EL+P  + A+V
Sbjct: 769 GLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYV 825

[Close]
BLAST of MC11g1449 vs. NCBI nr
Match: XP_038893557.1 (pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Benincasa hispida])

HSP 1 Score: 80.5 bits (197), Expect = 6.41e-16
Identity = 41/58 (70.69%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 1   CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV 52
           CGKLKE EELIN M IE      G  LAAC+VHGDIE+GK+AA+KVMELKP  TGAFV
Sbjct: 813 CGKLKEAEELINHMPIEPDALVWGTLLAACKVHGDIELGKLAARKVMELKPSDTGAFV 870

[Close]
BLAST of MC11g1449 vs. NCBI nr
Match: XP_022137435.1 (pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Momordica charantia] >XP_022137436.1 pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Momordica charantia] >XP_022137437.1 pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Momordica charantia] >XP_022137439.1 pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 1.63e-15
Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 1   CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV 52
           CG+LKE EELIN+M IE      G  LAAC+VHGDIE GK+AAKKVMELKP  TGA+V
Sbjct: 799 CGRLKEAEELINNMPIEPDALIWGTLLAACKVHGDIEFGKLAAKKVMELKPCDTGAYV 856

[Close]
BLAST of MC11g1449 vs. NCBI nr
Match: XP_008441907.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Cucumis melo])

HSP 1 Score: 77.0 bits (188), Expect = 1.06e-14
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 1   CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV 52
           CGKLKE EELIN M IE      G  LAAC+VHGDIE+GK+AA+KVMEL P  TGA+V
Sbjct: 798 CGKLKEAEELINHMPIEPDALIWGTLLAACKVHGDIELGKLAARKVMELNPGDTGAYV 855

[Close]
BLAST of MC11g1449 vs. NCBI nr
Match: KAA0036077.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 1.06e-14
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 1   CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV 52
           CGKLKE EELIN M IE      G  LAAC+VHGDIE+GK+AA+KVMEL P  TGA+V
Sbjct: 756 CGKLKEAEELINHMPIEPDALIWGTLLAACKVHGDIELGKLAARKVMELNPGDTGAYV 813

[Close]
BLAST of MC11g1449 vs. NCBI nr
Match: TYJ98884.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 1.06e-14
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 1   CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV 52
           CGKLKE EELIN M IE      G  LAAC+VHGDIE+GK+AA+KVMEL P  TGA+V
Sbjct: 837 CGKLKEAEELINHMPIEPDALIWGTLLAACKVHGDIELGKLAARKVMELNPGDTGAYV 894

[Close]
BLAST of MC11g1449 vs. ExPASy TrEMBL
Match: A0A6J1C6M8 (pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008883 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 7.91e-16
Identity = 40/58 (68.97%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 1   CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV 52
           CG+LKE EELIN+M IE      G  LAAC+VHGDIE GK+AAKKVMELKP  TGA+V
Sbjct: 799 CGRLKEAEELINNMPIEPDALIWGTLLAACKVHGDIEFGKLAAKKVMELKPCDTGAYV 856

[Close]
BLAST of MC11g1449 vs. ExPASy TrEMBL
Match: A0A1S3B4I2 (pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485891 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.14e-15
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 1   CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV 52
           CGKLKE EELIN M IE      G  LAAC+VHGDIE+GK+AA+KVMEL P  TGA+V
Sbjct: 798 CGKLKEAEELINHMPIEPDALIWGTLLAACKVHGDIELGKLAARKVMELNPGDTGAYV 855

[Close]
BLAST of MC11g1449 vs. ExPASy TrEMBL
Match: A0A5A7T3B5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00710 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.14e-15
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 1   CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV 52
           CGKLKE EELIN M IE      G  LAAC+VHGDIE+GK+AA+KVMEL P  TGA+V
Sbjct: 756 CGKLKEAEELINHMPIEPDALIWGTLLAACKVHGDIELGKLAARKVMELNPGDTGAYV 813

[Close]
BLAST of MC11g1449 vs. ExPASy TrEMBL
Match: A0A5D3BIJ5 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00800 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.14e-15
Identity = 39/58 (67.24%), Postives = 44/58 (75.86%), Query Frame = 0 

Query: 1   CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV 52
           CGKLKE EELIN M IE      G  LAAC+VHGDIE+GK+AA+KVMEL P  TGA+V
Sbjct: 837 CGKLKEAEELINHMPIEPDALIWGTLLAACKVHGDIELGKLAARKVMELNPGDTGAYV 894

[Close]
BLAST of MC11g1449 vs. ExPASy TrEMBL
Match: A0A6J1KIC5 (pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111495501 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 7.02e-15
Identity = 38/58 (65.52%), Postives = 45/58 (77.59%), Query Frame = 0 

Query: 1   CGKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV 52
           CG+LK  EELIN+M IE      G  LAAC+VHGDIE+GK+AA+KVMELKP  TGA+V
Sbjct: 799 CGQLKRAEELINNMPIEPDALIWGTLLAACKVHGDIELGKLAARKVMELKPSDTGAYV 856

[Close]
BLAST of MC11g1449 vs. TAIR 10
Match: AT1G74600.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 62.8 bits (151), Expect = 9.6e-11
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 0 

Query: 2   GKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV 53
           G+L+E E  IN+M I+      G  LAAC++HG++E+GK+AAKK +EL+P   GA++
Sbjct: 803 GRLREAESFINNMHIKPDALVWGTLLAACKIHGEVELGKVAAKKAIELEPSDAGAYI 859

[Close]
BLAST of MC11g1449 vs. TAIR 10
Match: AT4G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 7.6e-08
Identity = 25/55 (45.45%), Postives = 37/55 (67.27%), Query Frame = 0 

Query: 4   LKEGEELINSM------AIEGFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV 53
           L+E  E+I SM       I G  ++ACR+HG++E+GK AAK+++EL+P   GA V
Sbjct: 497 LREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALV 551

[Close]
BLAST of MC11g1449 vs. TAIR 10
Match: AT2G22070.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 51.6 bits (122), Expect = 2.2e-07
Identity = 24/56 (42.86%), Postives = 38/56 (67.86%), Query Frame = 0 

Query: 2   GKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAF 52
           G L+E +E I  M IE      G  L+ACRVH +I++GK+AA++++ L+P  +GA+
Sbjct: 565 GLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAY 620

[Close]
BLAST of MC11g1449 vs. TAIR 10
Match: AT2G22410.1 (SLOW GROWTH 1 )

HSP 1 Score: 50.8 bits (120), Expect = 3.8e-07
Identity = 24/57 (42.11%), Postives = 37/57 (64.91%), Query Frame = 0 

Query: 2   GKLKEGEELINSMAIE------GFFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV 53
           G L+E + L+ SM +E      G  L  CR+HG++E+G+ AAKK++EL P  +G +V
Sbjct: 540 GLLEEADRLMESMPMEADAAVWGALLFGCRMHGNVELGEKAAKKLLELDPSDSGIYV 596

[Close]
BLAST of MC11g1449 vs. TAIR 10
Match: AT4G33170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 50.4 bits (119), Expect = 4.9e-07
Identity = 26/57 (45.61%), Postives = 35/57 (61.40%), Query Frame = 0 

Query: 2   GKLKEGEELINSMAIEG------FFLAACRVHGDIEIGKIAAKKVMELKPYGTGAFV 53
           G +K+ E LI SM++E         LAACRV GD E GK  A K++EL+P  + A+V
Sbjct: 769 GLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYV 825

The following BLAST results are available for this feature:
BLAST of MC11g1449 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9CA561.3e-0947.37Pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Arabidop... [more]
O233371.1e-0645.45Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX... [more]
Q9SHZ83.1e-0642.86Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana OX... [more]
Q9SJZ35.3e-0642.11Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidop... [more]
Q9SMZ26.9e-0645.61Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana OX... [more]
BLAST of MC11g1449 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038893557.16.41e-1670.69pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Benincasa ... [more]
XP_022137435.11.63e-1568.97pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Momordica ... [more]
XP_008441907.11.06e-1467.24PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic ... [more]
KAA0036077.11.06e-1467.24pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
TYJ98884.11.06e-1467.24pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
BLAST of MC11g1449 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C6M87.91e-1668.97pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Momordic... [more]
A0A1S3B4I25.14e-1567.24pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Cucumis ... [more]
A0A5A7T3B55.14e-1567.24Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5D3BIJ55.14e-1567.24Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A6J1KIC57.02e-1565.52pentatricopeptide repeat-containing protein At1g74600, chloroplastic OS=Cucurbit... [more]
BLAST of MC11g1449 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G74600.19.6e-1147.37pentatricopeptide (PPR) repeat-containing protein [more]
AT4G14820.17.6e-0845.45Pentatricopeptide repeat (PPR) superfamily protein [more]
AT2G22070.12.2e-0742.86pentatricopeptide (PPR) repeat-containing protein [more]
AT2G22410.13.8e-0742.11SLOW GROWTH 1 [more]
AT4G33170.14.9e-0745.61Tetratricopeptide repeat (TPR)-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC11g1449.1MC11g1449.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0003723 RNA binding