MC11g1447 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1447
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	mediator of RNA polymerase II transcription subunit 22b-like
Location	MC11: 19318727 .. 19320694 (+)
RNA-Seq Expression	MC11g1447
Synteny	MC11g1447

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGCCATTTCCATTTGTATTATTATGAATAAAGGCGTTGGCGGTGGGAATGGGCCCACGGCGGCTGCTGCGGCGGCGGCAGCTCAGAAGCAGAAAGTGCTTCTCCAGAGAGTTGAAACCGATATAGCCAACATTGTCGACAATTTTACTCACCTTGTCAACGTCTCTAGGGTACTCCTCTTTTCTTTTCTTTCTCTTCTCTTTGCTCTTAATTTAATTACTTGCTTTGCTTATGTTCATTATTTTCTCAATTACATCTAAATCTCATTCTACCAGTTGGAATATAAATTTTGATTCATGGAAATAACCAAGTTTGCCTTCTAATTCTTGATTGAACCGTCACATGCTTGGAATTCCAAATTAAACTTACCCATTCTTGTTTCCTCAGGTGAACGATCCACCTGTTAGAAATTCACAGGAATCCTTCATGATGGAAATGCGTGCCGCCAGAATGGTAAGAAGTTTTCCCTTATTTACTTCCGGCTTTTGTGAAGGTCCCTTTGACCTCTAGATACATCTCTTATTTGTTCTATAATTGAGTGATTATCATCCGAGGAGCATAAACACTTCATTTTGAGTAATCCAACACTTACTAGGTGTACAAAGTGAATATAGATTCGATATCAAACACTTGTTAAGCCTAAGAAATAGACATTTTCTTATGCATAAGAAATAGACATTTTCTTAATCCAACACTTTTTAGCTGTGTCGTACTAGTTGTACAAAGTGAATATAGATTCGATATCAACACTTGTTAAGCCTAAGAAATAGACATTTTCTTAAGCTTAAGAAATAGACATTTTCTTCTGCATAAGAAATAGACATTTTCTTAAGCCTAAGAAATAGACATTTTTCTTATGTATAAGAAATATACATAAATAGTTATACTAAGACAAAATAATAAATTTTGAGAATAAAATACATCAAATTCATTTTTTTATATGCATTTTTTTAAACATAAAAATGCATAAGTTTATTGACTTTGGATTTCCTTCTAGTATGGAAATGATATATACCTAAAAAATTGTATATTTTAATAAACGTGTCTTTTCCGTGTCTTATCCGTGCTTCTTAGATTATCATCTTATCGAGGAATTTAGTGACCTTGCAACCTCTGCTTAGATAGATGAGGGCTTTGTCGTAATTTTAATTTCTAGTTTCAAATTTTCAAGGCTTCTGATATTCACACATAAGATCATACCCAATAAAAAATCGGGATTTTAAACTTTCTGTCCTTATCAGCTTCACATAGACGATAGCTCTCTGAATGGCAAGCAAGTTGTTTCCATTATGGCTACTATTTCAGTGTTTTTCTACTTGTCTCTAAATAGGTTCAGGCAGCTGATTCTCTGCTTAAGTTGGTGTCAGAACTTAAGCAGACAGCAATCTTTTCAGGATTTGCTTCACTAAACGATCATGTGGAGCAAAGAATTGTGGAATTCAACCAGCAGGCAGAGCAGACCGATCGTCTCTTATCTAGAATTGGTGAAGAAGCTGCTACCAGCCTGAAGGAGCTTGAATCCCATTATTATTCTTCAACACAGAGGACGAGTCAAAACATTCTGACATGATTAAAACCTAAGGTGTGAATTAAGTAGATTAGAGATATGATGTTGTTGGCTTCTAGACTCCCTTTGTAAATTATATGATAAGAATTATTTTGGGATAATTAAGGATATTAATAGAATAGTAAAGGATATATTAGTAATTAGTTAAAAGGTATTGGTCAGTATGGAATCGTTATAAATAAGAGTGAGGAGGAAGAAATGAAGGTAGGGGCCGGGCAATTGTTCAAGAGAGGGAACGCCCAAGTACCTTAAATTACTTAGAGTTATTGTTGTTCTTCTATCTTTCAATCTATTTAAGTATTTGGTTCCTAAATTCCTATCATTTTGCTAAATTGATATTTAAGTATTTGGTTCCTAAATTCCTATCATTATGCTAAATTACTTAGAGTTATTGTTGTTC

mRNA sequence

GTTGCCATTTCCATTTGTATTATTATGAATAAAGGCGTTGGCGGTGGGAATGGGCCCACGGCGGCTGCTGCGGCGGCGGCAGCTCAGAAGCAGAAAGTGCTTCTCCAGAGAGTTGAAACCGATATAGCCAACATTGTCGACAATTTTACTCACCTTGTCAACGTCTCTAGGGTGAACGATCCACCTGTTAGAAATTCACAGGAATCCTTCATGATGGAAATGCGTGCCGCCAGAATGGTTCAGGCAGCTGATTCTCTGCTTAAGTTGGTGTCAGAACTTAAGCAGACAGCAATCTTTTCAGGATTTGCTTCACTAAACGATCATGTGGAGCAAAGAATTGTGGAATTCAACCAGCAGGCAGAGCAGACCGATCGTCTCTTATCTAGAATTGGTGAAGAAGCTGCTACCAGCCTGAAGGAGCTTGAATCCCATTATTATTCTTCAACACAGAGGACGAGTCAAAACATTCTGACATGATTAAAACCTAAGGTGTGAATTAAGTAGATTAGAGATATGATGTTGTTGGCTTCTAGACTCCCTTTGTAAATTATATGATAAGAATTATTTTGGGATAATTAAGGATATTAATAGAATAGTAAAGGATATATTAGTAATTAGTTAAAAGGTATTGGTCAGTATGGAATCGTTATAAATAAGAGTGAGGAGGAAGAAATGAAGGTAGGGGCCGGGCAATTGTTCAAGAGAGGGAACGCCCAAGTACCTTAAATTACTTAGAGTTATTGTTGTTCTTCTATCTTTCAATCTATTTAAGTATTTGGTTCCTAAATTCCTATCATTTTGCTAAATTGATATTTAAGTATTTGGTTCCTAAATTCCTATCATTATGCTAAATTACTTAGAGTTATTGTTGTTC

Coding sequence (CDS)

GTTGCCATTTCCATTTGTATTATTATGAATAAAGGCGTTGGCGGTGGGAATGGGCCCACGGCGGCTGCTGCGGCGGCGGCAGCTCAGAAGCAGAAAGTGCTTCTCCAGAGAGTTGAAACCGATATAGCCAACATTGTCGACAATTTTACTCACCTTGTCAACGTCTCTAGGGTGAACGATCCACCTGTTAGAAATTCACAGGAATCCTTCATGATGGAAATGCGTGCCGCCAGAATGGTTCAGGCAGCTGATTCTCTGCTTAAGTTGGTGTCAGAACTTAAGCAGACAGCAATCTTTTCAGGATTTGCTTCACTAAACGATCATGTGGAGCAAAGAATTGTGGAATTCAACCAGCAGGCAGAGCAGACCGATCGTCTCTTATCTAGAATTGGTGAAGAAGCTGCTACCAGCCTGAAGGAGCTTGAATCCCATTATTATTCTTCAACACAGAGGACGAGTCAAAACATTCTGACATGA

Protein sequence

VAISICIIMNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT

Homology

[Close]

BLAST of MC11g1447 vs. ExPASy Swiss-Prot
Match: Q8LCH5 (Mediator of RNA polymerase II transcription subunit 22b OS=Arabidopsis thaliana OX=3702 GN=MED22B PE=1 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 7.6e-56
Identity = 114/145 (78.62%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 12  GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFM 71
           G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++M
Sbjct: 10  GSGGGSGPTAAAAAAALQKQKALLQRVETDITSVVDNFTQIVNVSRVSDPPVKNSQETYM 69

Query: 72  MEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRLLSRIG 131
           MEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRI EF+Q+AE+T+RLL+RI 
Sbjct: 70  MEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIEEFDQEAEKTNRLLARIA 129

Query: 132 EEAATSLKELESHYYSSTQRTSQNI 157
           ++A+ +LKELESHYYSS QR + +I
Sbjct: 130 DDASANLKELESHYYSSAQRLTLDI 154

[Close]

BLAST of MC11g1447 vs. ExPASy Swiss-Prot
Match: Q9SA42 (Mediator of RNA polymerase II transcription subunit 22a OS=Arabidopsis thaliana OX=3702 GN=MED22A PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 6.4e-55
Identity = 112/148 (75.68%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 8   IMNK--GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRN 67
           +MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++N
Sbjct: 1   MMNKGGGSGGGSGPTAAAAAAALQKQKALLQRVDTDITSVVDNFNQIVNVARVSDPPMKN 60

Query: 68  SQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDR 127
           SQE++MMEMRA+R+VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRI EF+Q+AE+T+R
Sbjct: 61  SQEAYMMEMRASRLVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIAEFDQEAEKTNR 120

Query: 128 LLSRIGEEAATSLKELESHYYSSTQRTS 154
           LL+RI ++A+ SLKELESHYYSS QR++
Sbjct: 121 LLARIADDASASLKELESHYYSSAQRST 148

[Close]

BLAST of MC11g1447 vs. ExPASy Swiss-Prot
Match: Q54XB0 (Putative mediator of RNA polymerase II transcription subunit 22 OS=Dictyostelium discoideum OX=44689 GN=med22 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-15
Identity = 45/143 (31.47%), Postives = 89/143 (62.24%), Query Frame = 0


Query: 9   MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 68
           MN G G  + P         + Q+   +++++ I  +++N+ +++ +S+VND P++N+ E
Sbjct: 1   MNTG-GNNSLPPQTRGEVLFRDQQFFQKQIDSKIMQLLENYHNIIKISKVND-PLKNASE 60

Query: 69  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRLLS 128
            + ME R + M+ A + LLK++ ELKQ  I + F+++ + V  + + F+++ E+T++ + 
Sbjct: 61  IYEMETRTSNMLNAGEGLLKIIEELKQNLILNDFSTMAEEVRIQNLVFHKENERTNKSIK 120

Query: 129 RIGEEAATSLKELESHYYSSTQR 152
            I EE + SLKELE  YY+S+ +
Sbjct: 121 LISEELSRSLKELEDEYYNSSYK 141

[Close]

BLAST of MC11g1447 vs. ExPASy Swiss-Prot
Match: Q62276 (Mediator of RNA polymerase II transcription subunit 22 OS=Mus musculus OX=10090 GN=Med22 PE=1 SV=2)

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-15
Identity = 50/137 (36.50%), Postives = 82/137 (59.85%), Query Frame = 0


Query: 22  AAAAAAAQKQKVLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMM 81
           A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M
Sbjct: 2   AQQRALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEM 61

Query: 82  EMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRLLSRIGE 141
            +RAA +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     E+ DR L  + +
Sbjct: 62  HVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRD 121

Query: 142 EAATSLKELESHYYSST 150
           E +  L ELE  YYSS+
Sbjct: 122 EVSIDLYELEEEYYSSS 138

[Close]

BLAST of MC11g1447 vs. ExPASy Swiss-Prot
Match: A0JPN6 (Mediator of RNA polymerase II transcription subunit 22 OS=Rattus norvegicus OX=10116 GN=Med22 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-15
Identity = 50/137 (36.50%), Postives = 82/137 (59.85%), Query Frame = 0


Query: 22  AAAAAAAQKQKVLLQ----RVETDIANIVDNFTHLVNVSRVNDP-----PVRNSQESFMM 81
           A   A  Q ++ LLQ    R++ DI +I+DNFT ++  +++ D        +  Q+++ M
Sbjct: 2   AQQRALPQSKETLLQSYNKRLKDDIKSIMDNFTEIIKTAKIEDETQVSRATQGEQDNYEM 61

Query: 82  EMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRLLSRIGE 141
            +RAA +V+A +SL+KLVS+LKQ  I + F S+N+ ++QR  +     E+ DR L  + +
Sbjct: 62  HVRAANIVRAGESLMKLVSDLKQFLILNDFPSVNEAIDQRNQQLRALQEECDRKLITLRD 121

Query: 142 EAATSLKELESHYYSST 150
           E +  L ELE  YYSS+
Sbjct: 122 EVSIDLYELEEEYYSSS 138

[Close]

BLAST of MC11g1447 vs. NCBI nr
Match: XP_022155216.1 (mediator of RNA polymerase II transcription subunit 22b-like [Momordica charantia])

HSP 1 Score: 278 bits (711), Expect = 8.81e-94
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 9   MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 68
           MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 69  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRLLS 128
           SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRLLS
Sbjct: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRLLS 120

Query: 129 RIGEEAATSLKELESHYYSSTQRTSQNILT 158
           RIGEEAATSLKELESHYYSSTQRTSQNILT
Sbjct: 121 RIGEEAATSLKELESHYYSSTQRTSQNILT 150

[Close]

BLAST of MC11g1447 vs. NCBI nr
Match: XP_008459037.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 22a-like isoform X1 [Cucumis melo] >KAA0043196.1 mediator of RNA polymerase II transcription subunit 22a-like isoform X1 [Cucumis melo var. makuwa] >TYK12271.1 mediator of RNA polymerase II transcription subunit 22a-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 272 bits (696), Expect = 8.48e-91
Identity = 146/158 (92.41%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   VAISICIIMNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVND 60
           + ISI IIMNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVND
Sbjct: 40  IPISISIIMNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVND 99

Query: 61  PPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA 120
           PPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA
Sbjct: 100 PPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA 159

Query: 121 EQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT 158
           +QT+RLLSRIGEEAA +LKELESHYYSSTQRT QN LT
Sbjct: 160 QQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT 197

[Close]

BLAST of MC11g1447 vs. NCBI nr
Match: XP_004145443.1 (mediator of RNA polymerase II transcription subunit 22b [Cucumis sativus] >KGN66872.1 hypothetical protein Csa_007213 [Cucumis sativus])

HSP 1 Score: 266 bits (680), Expect = 4.69e-89
Identity = 142/150 (94.67%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 9   MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 68
           MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 69  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRLLS 128
           SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA+QTDRLLS
Sbjct: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120

Query: 129 RIGEEAATSLKELESHYYSSTQRTSQNILT 158
           RIGEEAA +LKELESHYYSSTQRT QN LT
Sbjct: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 150

[Close]

BLAST of MC11g1447 vs. NCBI nr
Match: KAG7029838.1 (Mediator of RNA polymerase II transcription subunit 22b [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265 bits (678), Expect = 9.46e-89
Identity = 141/150 (94.00%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 9   MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 68
           MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 69  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRLLS 128
           SFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDR+LS
Sbjct: 61  SFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRILS 120

Query: 129 RIGEEAATSLKELESHYYSSTQRTSQNILT 158
           +IGEEAA  LKELESHYYSSTQRTSQN LT
Sbjct: 121 KIGEEAAVGLKELESHYYSSTQRTSQNSLT 150

[Close]

BLAST of MC11g1447 vs. NCBI nr
Match: XP_023545554.1 (mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita pepo subsp. pepo] >XP_023545555.1 mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita pepo subsp. pepo] >XP_023545556.1 mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265 bits (677), Expect = 1.34e-88
Identity = 141/150 (94.00%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 9   MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 68
           MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 69  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRLLS 128
           SFMMEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDR+LS
Sbjct: 61  SFMMEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRVLS 120

Query: 129 RIGEEAATSLKELESHYYSSTQRTSQNILT 158
           +IGEEAA  LKELESHYYSSTQRTSQN LT
Sbjct: 121 KIGEEAAVGLKELESHYYSSTQRTSQNSLT 150

[Close]

BLAST of MC11g1447 vs. ExPASy TrEMBL
Match: A0A6J1DR20 (mediator of RNA polymerase II transcription subunit 22b-like OS=Momordica charantia OX=3673 GN=LOC111022360 PE=4 SV=1)

HSP 1 Score: 278 bits (711), Expect = 4.27e-94
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 9   MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 68
           MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 69  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRLLS 128
           SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRLLS
Sbjct: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRLLS 120

Query: 129 RIGEEAATSLKELESHYYSSTQRTSQNILT 158
           RIGEEAATSLKELESHYYSSTQRTSQNILT
Sbjct: 121 RIGEEAATSLKELESHYYSSTQRTSQNILT 150

[Close]

BLAST of MC11g1447 vs. ExPASy TrEMBL
Match: A0A5A7TMC4 (Mediator of RNA polymerase II transcription subunit 22a-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00280 PE=4 SV=1)

HSP 1 Score: 272 bits (696), Expect = 4.10e-91
Identity = 146/158 (92.41%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   VAISICIIMNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVND 60
           + ISI IIMNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVND
Sbjct: 40  IPISISIIMNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVND 99

Query: 61  PPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA 120
           PPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA
Sbjct: 100 PPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA 159

Query: 121 EQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT 158
           +QT+RLLSRIGEEAA +LKELESHYYSSTQRT QN LT
Sbjct: 160 QQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT 197

[Close]

BLAST of MC11g1447 vs. ExPASy TrEMBL
Match: A0A1S3CAG5 (mediator of RNA polymerase II transcription subunit 22a-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103498265 PE=4 SV=1)

HSP 1 Score: 272 bits (696), Expect = 4.10e-91
Identity = 146/158 (92.41%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 1   VAISICIIMNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVND 60
           + ISI IIMNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVND
Sbjct: 40  IPISISIIMNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVND 99

Query: 61  PPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA 120
           PPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA
Sbjct: 100 PPVRNSQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA 159

Query: 121 EQTDRLLSRIGEEAATSLKELESHYYSSTQRTSQNILT 158
           +QT+RLLSRIGEEAA +LKELESHYYSSTQRT QN LT
Sbjct: 160 QQTERLLSRIGEEAAANLKELESHYYSSTQRTDQNNLT 197

[Close]

BLAST of MC11g1447 vs. ExPASy TrEMBL
Match: A0A0A0M174 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701970 PE=4 SV=1)

HSP 1 Score: 266 bits (680), Expect = 2.27e-89
Identity = 142/150 (94.67%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 9   MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 68
           MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 69  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRLLS 128
           SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA+QTDRLLS
Sbjct: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTDRLLS 120

Query: 129 RIGEEAATSLKELESHYYSSTQRTSQNILT 158
           RIGEEAA +LKELESHYYSSTQRT QN LT
Sbjct: 121 RIGEEAAANLKELESHYYSSTQRTDQNSLT 150

[Close]

BLAST of MC11g1447 vs. ExPASy TrEMBL
Match: A0A1S3C993 (mediator of RNA polymerase II transcription subunit 22b-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498265 PE=4 SV=1)

HSP 1 Score: 264 bits (675), Expect = 1.31e-88
Identity = 141/150 (94.00%), Postives = 146/150 (97.33%), Query Frame = 0


Query: 9   MNKGVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 68
           MNKG+GGG GPTAAAAAAAAQKQK+LLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE
Sbjct: 1   MNKGIGGGTGPTAAAAAAAAQKQKLLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQE 60

Query: 69  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRLLS 128
           SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQA+QT+RLLS
Sbjct: 61  SFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAQQTERLLS 120

Query: 129 RIGEEAATSLKELESHYYSSTQRTSQNILT 158
           RIGEEAA +LKELESHYYSSTQRT QN LT
Sbjct: 121 RIGEEAAANLKELESHYYSSTQRTDQNNLT 150

[Close]

BLAST of MC11g1447 vs. TAIR 10
Match: AT1G07950.1 (Surfeit locus protein 5 subunit 22 of Mediator complex )

HSP 1 Score: 218.0 bits (554), Expect = 5.4e-57
Identity = 114/145 (78.62%), Postives = 134/145 (92.41%), Query Frame = 0


Query: 12  GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRNSQESFM 71
           G GGG+GPTAAAAAAA QKQK LLQRVETDI ++VDNFT +VNVSRV+DPPV+NSQE++M
Sbjct: 10  GSGGGSGPTAAAAAAALQKQKALLQRVETDITSVVDNFTQIVNVSRVSDPPVKNSQETYM 69

Query: 72  MEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDRLLSRIG 131
           MEMRA+RMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRI EF+Q+AE+T+RLL+RI 
Sbjct: 70  MEMRASRMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIEEFDQEAEKTNRLLARIA 129

Query: 132 EEAATSLKELESHYYSSTQRTSQNI 157
           ++A+ +LKELESHYYSS QR + +I
Sbjct: 130 DDASANLKELESHYYSSAQRLTLDI 154

[Close]

BLAST of MC11g1447 vs. TAIR 10
Match: AT1G16430.1 (Surfeit locus protein 5 subunit 22 of Mediator complex )

HSP 1 Score: 214.9 bits (546), Expect = 4.6e-56
Identity = 112/148 (75.68%), Postives = 136/148 (91.89%), Query Frame = 0


Query: 8   IMNK--GVGGGNGPTAAAAAAAAQKQKVLLQRVETDIANIVDNFTHLVNVSRVNDPPVRN 67
           +MNK  G GGG+GPTAAAAAAA QKQK LLQRV+TDI ++VDNF  +VNV+RV+DPP++N
Sbjct: 1   MMNKGGGSGGGSGPTAAAAAAALQKQKALLQRVDTDITSVVDNFNQIVNVARVSDPPMKN 60

Query: 68  SQESFMMEMRAARMVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIVEFNQQAEQTDR 127
           SQE++MMEMRA+R+VQAADSLLKLVSELKQTAIFSGFASLNDHVEQRI EF+Q+AE+T+R
Sbjct: 61  SQEAYMMEMRASRLVQAADSLLKLVSELKQTAIFSGFASLNDHVEQRIAEFDQEAEKTNR 120

Query: 128 LLSRIGEEAATSLKELESHYYSSTQRTS 154
           LL+RI ++A+ SLKELESHYYSS QR++
Sbjct: 121 LLARIADDASASLKELESHYYSSAQRST 148

The following BLAST results are available for this feature:

BLAST of MC11g1447 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LCH5	7.6e-56	78.62	Mediator of RNA polymerase II transcription subunit 22b OS=Arabidopsis thaliana ...	[more]
Q9SA42	6.4e-55	75.68	Mediator of RNA polymerase II transcription subunit 22a OS=Arabidopsis thaliana ...	[more]
Q54XB0	1.3e-15	31.47	Putative mediator of RNA polymerase II transcription subunit 22 OS=Dictyostelium...	[more]
Q62276	3.8e-15	36.50	Mediator of RNA polymerase II transcription subunit 22 OS=Mus musculus OX=10090 ...	[more]
A0JPN6	3.8e-15	36.50	Mediator of RNA polymerase II transcription subunit 22 OS=Rattus norvegicus OX=1...	[more]

BLAST of MC11g1447 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155216.1	8.81e-94	100.00	mediator of RNA polymerase II transcription subunit 22b-like [Momordica charanti...	[more]
XP_008459037.1	8.48e-91	92.41	PREDICTED: mediator of RNA polymerase II transcription subunit 22a-like isoform ...	[more]
XP_004145443.1	4.69e-89	94.67	mediator of RNA polymerase II transcription subunit 22b [Cucumis sativus] >KGN66...	[more]
KAG7029838.1	9.46e-89	94.00	Mediator of RNA polymerase II transcription subunit 22b [Cucurbita argyrosperma ...	[more]
XP_023545554.1	1.34e-88	94.00	mediator of RNA polymerase II transcription subunit 22b-like [Cucurbita pepo sub...	[more]

BLAST of MC11g1447 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DR20	4.27e-94	100.00	mediator of RNA polymerase II transcription subunit 22b-like OS=Momordica charan...	[more]
A0A5A7TMC4	4.10e-91	92.41	Mediator of RNA polymerase II transcription subunit 22a-like isoform X1 OS=Cucum...	[more]
A0A1S3CAG5	4.10e-91	92.41	mediator of RNA polymerase II transcription subunit 22a-like isoform X1 OS=Cucum...	[more]
A0A0A0M174	2.27e-89	94.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G701970 PE=4 SV=1	[more]
A0A1S3C993	1.31e-88	94.00	mediator of RNA polymerase II transcription subunit 22b-like isoform X2 OS=Cucum...	[more]

BLAST of MC11g1447 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07950.1	5.4e-57	78.62	Surfeit locus protein 5 subunit 22 of Mediator complex	[more]
AT1G16430.1	4.6e-56	75.68	Surfeit locus protein 5 subunit 22 of Mediator complex	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009332	Mediator of RNA polymerase II transcription subunit 22	PFAM	PF06179	Med22	coord: 36..135 e-value: 1.5E-28 score: 99.1
IPR009332	Mediator of RNA polymerase II transcription subunit 22	PANTHER	PTHR12434	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 22	coord: 9..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g1447.1	MC11g1447.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity