MC11g1396 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1396
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	vacuolar protein sorting-associated protein 55 homolog
Location	MC11: 18410683 .. 18411271 (+)
RNA-Seq Expression	MC11g1396
Synteny	MC11g1396

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGCCATTGCTGAGTGGTAAGATTGAAAAATGTCTGCTATAACCAAATGTGTTATATCTTTGAAACTTTCTCAGCAGTTGATTACCAAATTTGCTTCAGTGGTCATGCTATATTACTGGAAGATTTTGTAGAAAAACAGTCATTCTGGTTTGTGTCAATAGGATGTAACATGGGTTGTTTTTGTAAAGACAATTACTTCCTTCTAGTACTTTTTGGGGACAATAGATAGCCATCTTTACTCTTGCATGTAATAAAAATCATGTCAATTTAAAAAATAACTTCGCTGATCATAATCTTCTTCCATTGTTATTGCAGTGATTATGTACATTCTTCTCCCAATGCCTTTGCTGTTTTTTGCTGGTTTCAATACTTCCTCCGCCATCTTCCGAAACTGGAGACAGTTTGTTTCTGATCATCATACTTCATTCTGAATCACTGACAATTAGAATCCATGCCTAGGCTCTATAACACGTTTATTTTTAACGACTAACGAAATAGCTAGGTGAATGCGACTAAATTTTTAACTAGGACTTCAACGGTTGGAAGCATTGCAATACCTGCAATTTTGAAGCATGCTGATATTATCGAC

mRNA sequence

TGGCCATTGCTGAGTGTGATTATGTACATTCTTCTCCCAATGCCTTTGCTGTTTTTTGCTGGTTTCAATACTTCCTCCGCCATCTTCCGAAACTGGAGACAGTTTGTGAATGCGACTAAATTTTTAACTAGGACTTCAACGGTTGGAAGCATTGCAATACCTGCAATTTTGAAGCATGCTGATATTATCGAC

Coding sequence (CDS)

TGGCCATTGCTGAGTGTGATTATGTACATTCTTCTCCCAATGCCTTTGCTGTTTTTTGCTGGTTTCAATACTTCCTCCGCCATCTTCCGAAACTGGAGACAGTTTGTGAATGCGACTAAATTTTTAACTAGGACTTCAACGGTTGGAAGCATTGCAATACCTGCAATTTTGAAGCATGCTGATATTATCGAC

Protein sequence

WPLLSVIMYILLPMPLLFFAGFNTSSAIFRNWRQFVNATKFLTRTSTVGSIAIPAILKHADIID

Homology

[Close]

BLAST of MC11g1396 vs. ExPASy Swiss-Prot
Match: Q9AST6 (Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana OX=3702 GN=At1g32410 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.8e-14
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1   WPLLSVIMYILLPMPLLFFAGFNTSSAIFRNWRQFVNATKFLTRTSTVGSIAIPAILKHA 60
           WP+LSVIMY+LLPMPLLFF G +++S    +   ++NA KFLT  S VGS+AIP+ILKHA
Sbjct: 42  WPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSWINAAKFLTGASAVGSVAIPSILKHA 101

Query: 61  DII 64
            +I
Sbjct: 102 GLI 104

[Close]

BLAST of MC11g1396 vs. NCBI nr
Match: XP_022157395.1 (vacuolar protein sorting-associated protein 55 homolog [Momordica charantia] >XP_022157399.1 vacuolar protein sorting-associated protein 55 homolog [Momordica charantia])

HSP 1 Score: 89.4 bits (220), Expect = 6.59e-21
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1   WPLLSVIMYILLPMPLLFFAGFNTSSAIFRNWRQFVNATKFLTRTSTVGSIAIPAILKHA 60
           WPLLSVIMYILLPMPLLFFAG +TSS    +   +VNATKFLT  STVGSIAIP ILKHA
Sbjct: 38  WPLLSVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHA 97

Query: 61  DII 63
           +II
Sbjct: 98  NII 100

[Close]

BLAST of MC11g1396 vs. NCBI nr
Match: XP_022772447.1 (vacuolar protein sorting-associated protein 55 homolog [Durio zibethinus])

HSP 1 Score: 88.6 bits (218), Expect = 2.11e-20
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1   WPLLSVIMYILLPMPLLFFAGFNTSSAIFRNWRQFVNATKFLTRTSTVGSIAIPAILKHA 60
           WP+L+VIMY+LLPMPLLFFAGFN SS +  +   +V ATK+LT  STVGSIAIPAILKHA
Sbjct: 57  WPMLTVIMYVLLPMPLLFFAGFNVSSLLSESGNSWVKATKYLTGASTVGSIAIPAILKHA 116

[Close]

BLAST of MC11g1396 vs. NCBI nr
Match: XP_021599879.1 (vacuolar protein sorting-associated protein 55 homolog [Manihot esculenta] >OAY24482.1 hypothetical protein MANES_17G019200v8 [Manihot esculenta] >OAY24520.2 hypothetical protein MANES_17G019200v8 [Manihot esculenta])

HSP 1 Score: 85.9 bits (211), Expect = 1.69e-19
Identity = 44/63 (69.84%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1   WPLLSVIMYILLPMPLLFFAGFNTSSAIFRNWRQFVNATKFLTRTSTVGSIAIPAILKHA 60
           WP+LSVIMY+LLPMPLLFFAG ++SS    +   +VNATKFLT  S VGSIAIPAILKHA
Sbjct: 42  WPMLSVIMYVLLPMPLLFFAGSDSSSLFSESNNSWVNATKFLTGASAVGSIAIPAILKHA 101

Query: 61  DII 63
            +I
Sbjct: 102 GVI 104

[Close]

BLAST of MC11g1396 vs. NCBI nr
Match: XP_012084363.1 (vacuolar protein sorting-associated protein 55 homolog isoform X2 [Jatropha curcas] >XP_012084364.1 vacuolar protein sorting-associated protein 55 homolog isoform X2 [Jatropha curcas])

HSP 1 Score: 85.9 bits (211), Expect = 1.73e-19
Identity = 44/63 (69.84%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1   WPLLSVIMYILLPMPLLFFAGFNTSSAIFRNWRQFVNATKFLTRTSTVGSIAIPAILKHA 60
           WP+LSVIMY+LLPMPLLFFAG ++SS I  +   +VNATKFLT  S VGSIAIP ILKHA
Sbjct: 42  WPMLSVIMYVLLPMPLLFFAGSDSSSLISESDNSWVNATKFLTGASVVGSIAIPVILKHA 101

Query: 61  DII 63
            +I
Sbjct: 102 GVI 104

[Close]

BLAST of MC11g1396 vs. NCBI nr
Match: KAF3955750.1 (hypothetical protein CMV_019074 [Castanea mollissima])

HSP 1 Score: 84.7 bits (208), Expect = 2.93e-19
Identity = 42/63 (66.67%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1  WPLLSVIMYILLPMPLLFFAGFNTSSAIFRNWRQFVNATKFLTRTSTVGSIAIPAILKHA 60
          WP+L+V+MY+LLPMPLLFFAG ++SS +  +   +VNATKFLT  S VGSIAIPAILKHA
Sbjct: 23 WPMLNVLMYVLLPMPLLFFAGSDSSSVLSESESPWVNATKFLTGASAVGSIAIPAILKHA 82

Query: 61 DII 63
           +I
Sbjct: 83 GVI 85

[Close]

BLAST of MC11g1396 vs. ExPASy TrEMBL
Match: A0A6J1DSZ0 (vacuolar protein sorting-associated protein 55 homolog OS=Momordica charantia OX=3673 GN=LOC111024101 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.19e-21
Identity = 48/63 (76.19%), Postives = 52/63 (82.54%), Query Frame = 0


Query: 1   WPLLSVIMYILLPMPLLFFAGFNTSSAIFRNWRQFVNATKFLTRTSTVGSIAIPAILKHA 60
           WPLLSVIMYILLPMPLLFFAG +TSS    +   +VNATKFLT  STVGSIAIP ILKHA
Sbjct: 38  WPLLSVIMYILLPMPLLFFAGSDTSSLSSESGDSWVNATKFLTGASTVGSIAIPVILKHA 97

Query: 61  DII 63
           +II
Sbjct: 98  NII 100

[Close]

BLAST of MC11g1396 vs. ExPASy TrEMBL
Match: A0A6P6B5J2 (vacuolar protein sorting-associated protein 55 homolog OS=Durio zibethinus OX=66656 GN=LOC111315108 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.02e-20
Identity = 43/61 (70.49%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 1   WPLLSVIMYILLPMPLLFFAGFNTSSAIFRNWRQFVNATKFLTRTSTVGSIAIPAILKHA 60
           WP+L+VIMY+LLPMPLLFFAGFN SS +  +   +V ATK+LT  STVGSIAIPAILKHA
Sbjct: 57  WPMLTVIMYVLLPMPLLFFAGFNVSSLLSESGNSWVKATKYLTGASTVGSIAIPAILKHA 116

[Close]

BLAST of MC11g1396 vs. ExPASy TrEMBL
Match: A0A2C9U468 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G019200 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 8.18e-20
Identity = 44/63 (69.84%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1   WPLLSVIMYILLPMPLLFFAGFNTSSAIFRNWRQFVNATKFLTRTSTVGSIAIPAILKHA 60
           WP+LSVIMY+LLPMPLLFFAG ++SS    +   +VNATKFLT  S VGSIAIPAILKHA
Sbjct: 42  WPMLSVIMYVLLPMPLLFFAGSDSSSLFSESNNSWVNATKFLTGASAVGSIAIPAILKHA 101

Query: 61  DII 63
            +I
Sbjct: 102 GVI 104

[Close]

BLAST of MC11g1396 vs. ExPASy TrEMBL
Match: A0A6M2F9G2 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.19e-19
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1   WPLLSVIMYILLPMPLLFFAGFNTSSAIFRNWRQFVNATKFLTRTSTVGSIAIPAILKHA 60
           WP+LSVIMY+LLPMPLLFFAG N+SS +  +   +VNATKFLT  S +GSIAIP ILKHA
Sbjct: 43  WPMLSVIMYVLLPMPLLFFAGSNSSSLLTESDSGWVNATKFLTGASAIGSIAIPVILKHA 102

Query: 61  DII 63
            +I
Sbjct: 103 GVI 105

[Close]

BLAST of MC11g1396 vs. ExPASy TrEMBL
Match: D7TTG4 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0012g00600 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.64e-19
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 1   WPLLSVIMYILLPMPLLFFAGFNTSSAIFRNWRQFVNATKFLTRTSTVGSIAIPAILKHA 60
           WP+L+VIMY+LLPMPLLFFAG +TSS    +   +V+ATKFLT  S VGSIAIPAILKHA
Sbjct: 42  WPMLTVIMYVLLPMPLLFFAGSDTSSLFSESGNSWVDATKFLTGASAVGSIAIPAILKHA 101

Query: 61  DII 63
            +I
Sbjct: 102 GVI 104

[Close]

BLAST of MC11g1396 vs. TAIR 10
Match: AT1G32410.1 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-15
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1   WPLLSVIMYILLPMPLLFFAGFNTSSAIFRNWRQFVNATKFLTRTSTVGSIAIPAILKHA 60
           WP+LSVIMY+LLPMPLLFF G +++S    +   ++NA KFLT  S VGS+AIP+ILKHA
Sbjct: 42  WPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSWINAAKFLTGASAVGSVAIPSILKHA 101

Query: 61  DII 64
            +I
Sbjct: 102 GLI 104

[Close]

BLAST of MC11g1396 vs. TAIR 10
Match: AT1G32410.2 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-15
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1   WPLLSVIMYILLPMPLLFFAGFNTSSAIFRNWRQFVNATKFLTRTSTVGSIAIPAILKHA 60
           WP+LSVIMY+LLPMPLLFF G +++S    +   ++NA KFLT  S VGS+AIP+ILKHA
Sbjct: 42  WPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSWINAAKFLTGASAVGSVAIPSILKHA 101

Query: 61  DII 64
            +I
Sbjct: 102 GLI 104

[Close]

BLAST of MC11g1396 vs. TAIR 10
Match: AT1G32410.3 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-15
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1   WPLLSVIMYILLPMPLLFFAGFNTSSAIFRNWRQFVNATKFLTRTSTVGSIAIPAILKHA 60
           WP+LSVIMY+LLPMPLLFF G +++S    +   ++NA KFLT  S VGS+AIP+ILKHA
Sbjct: 42  WPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSWINAAKFLTGASAVGSVAIPSILKHA 101

Query: 61  DII 64
            +I
Sbjct: 102 GLI 104

[Close]

BLAST of MC11g1396 vs. TAIR 10
Match: AT1G32410.4 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-15
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1   WPLLSVIMYILLPMPLLFFAGFNTSSAIFRNWRQFVNATKFLTRTSTVGSIAIPAILKHA 60
           WP+LSVIMY+LLPMPLLFF G +++S    +   ++NA KFLT  S VGS+AIP+ILKHA
Sbjct: 42  WPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSWINAAKFLTGASAVGSVAIPSILKHA 101

Query: 61  DII 64
            +I
Sbjct: 102 GLI 104

[Close]

BLAST of MC11g1396 vs. TAIR 10
Match: AT1G32410.5 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 78.2 bits (191), Expect = 2.7e-15
Identity = 38/63 (60.32%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1   WPLLSVIMYILLPMPLLFFAGFNTSSAIFRNWRQFVNATKFLTRTSTVGSIAIPAILKHA 60
           WP+LSVIMY+LLPMPLLFF G +++S    +   ++NA KFLT  S VGS+AIP+ILKHA
Sbjct: 42  WPMLSVIMYVLLPMPLLFFGGSDSTSLFNESDNSWINAAKFLTGASAVGSVAIPSILKHA 101

Query: 61  DII 64
            +I
Sbjct: 102 GLI 104

The following BLAST results are available for this feature:

BLAST of MC11g1396 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AST6	3.8e-14	60.32	Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana O...	[more]

BLAST of MC11g1396 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157395.1	6.59e-21	76.19	vacuolar protein sorting-associated protein 55 homolog [Momordica charantia] >XP...	[more]
XP_022772447.1	2.11e-20	70.49	vacuolar protein sorting-associated protein 55 homolog [Durio zibethinus]	[more]
XP_021599879.1	1.69e-19	69.84	vacuolar protein sorting-associated protein 55 homolog [Manihot esculenta] >OAY2...	[more]
XP_012084363.1	1.73e-19	69.84	vacuolar protein sorting-associated protein 55 homolog isoform X2 [Jatropha curc...	[more]
KAF3955750.1	2.93e-19	66.67	hypothetical protein CMV_019074 [Castanea mollissima]	[more]

BLAST of MC11g1396 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSZ0	3.19e-21	76.19	vacuolar protein sorting-associated protein 55 homolog OS=Momordica charantia OX...	[more]
A0A6P6B5J2	1.02e-20	70.49	vacuolar protein sorting-associated protein 55 homolog OS=Durio zibethinus OX=66...	[more]
A0A2C9U468	8.18e-20	69.84	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G019200 PE=3 SV=...	[more]
A0A6M2F9G2	1.19e-19	68.25	Uncharacterized protein OS=Populus davidiana OX=266767 PE=3 SV=1	[more]
D7TTG4	1.64e-19	68.25	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0012g00600 PE=3 SV=...	[more]

BLAST of MC11g1396 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32410.1	2.7e-15	60.32	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.2	2.7e-15	60.32	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.3	2.7e-15	60.32	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.4	2.7e-15	60.32	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.5	2.7e-15	60.32	Vacuolar protein sorting 55 (VPS55) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007262	Vps55/LEPROT	PFAM	PF04133	Vps55	coord: 1..63 e-value: 1.3E-12 score: 47.6
IPR007262	Vps55/LEPROT	PANTHER	PTHR12050	LEPTIN RECEPTOR-RELATED	coord: 1..63
None	No IPR available	PANTHER	PTHR12050:SF1	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 55 HOMOLOG	coord: 1..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g1396.1	MC11g1396.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032511	late endosome to vacuole transport via multivesicular body sorting pathway
cellular_component	GO:0005768	endosome
cellular_component	GO:0016021	integral component of membrane