MC11g1257 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1257
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Small nuclear ribonucleoprotein E
Location	MC11: 13577581 .. 13577803 (-)
RNA-Seq Expression	MC11g1257
Synteny	MC11g1257

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCTTCGATGAATATATGAATTTGGTTCTCGATGATGCAGAGGAAGTCAACGTAAAGAAGAAGAGCAGGAAGACTTTAGGTTTGTGTTCTGATTGTTATCCATTATTCACATGGGCCATGGCCAATACTTTGTCGAATTAAGGAGAGACTAAAACTAAAAGGTTGTTTCCACTTGTCAGGGAGGATACTCCTTAAAGGAGACAACATAACTCTGATGATGAAC

mRNA sequence

GGCTTCGATGAATATATGAATTTGGTTCTCGATGATGCAGAGGAAGTCAACGTAAAGAAGAAGAGCAGGAAGACTTTAGGGAGGATACTCCTTAAAGGAGACAACATAACTCTGATGATGAAC

Coding sequence (CDS)

GGCTTCGATGAATATATGAATTTGGTTCTCGATGATGCAGAGGAAGTCAACGTAAAGAAGAAGAGCAGGAAGACTTTAGGGAGGATACTCCTTAAAGGAGACAACATAACTCTGATGATGAAC

Protein sequence

GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN

Homology

[Close]

BLAST of MC11g1257 vs. ExPASy Swiss-Prot
Match: Q7ZUG0 (Small nuclear ribonucleoprotein E OS=Danio rerio OX=7955 GN=snrpe PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-11
Identity = 32/41 (78.05%), Postives = 38/41 (92.68%), Query Frame = 0


Query: 1  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 42
          GFDEYMNLVLDDAEEV++K K+RK LGRI+LKGDNITL+ +
Sbjct: 49 GFDEYMNLVLDDAEEVHMKTKNRKPLGRIMLKGDNITLLQS 89

[Close]

BLAST of MC11g1257 vs. ExPASy Swiss-Prot
Match: A4FUI2 (Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.9e-11
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 42
          GFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ +
Sbjct: 49 GFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of MC11g1257 vs. ExPASy Swiss-Prot
Match: P62303 (Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.9e-11
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 42
          GFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ +
Sbjct: 49 GFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of MC11g1257 vs. ExPASy Swiss-Prot
Match: P62304 (Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.9e-11
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 42
          GFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ +
Sbjct: 49 GFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of MC11g1257 vs. ExPASy Swiss-Prot
Match: P62305 (Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.9e-11
Identity = 32/41 (78.05%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 1  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 42
          GFDEYMNLVLDDAEE++ K KSRK LGRI+LKGDNITL+ +
Sbjct: 49 GFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQS 89

[Close]

BLAST of MC11g1257 vs. NCBI nr
Match: KHN31189.1 (Small nuclear ribonucleoprotein E [Glycine soja])

HSP 1 Score: 83.6 bits (205), Expect = 6.20e-20
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 41
          GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
Sbjct: 15 GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 55

[Close]

BLAST of MC11g1257 vs. NCBI nr
Match: KHN17560.1 (Small nuclear ribonucleoprotein E [Glycine soja])

HSP 1 Score: 83.2 bits (204), Expect = 7.63e-20
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 41
          GFDEYMNLVLDDAEEVN+KKKSRKTLGRILLKGDNITLMMN
Sbjct: 9  GFDEYMNLVLDDAEEVNIKKKSRKTLGRILLKGDNITLMMN 49

[Close]

BLAST of MC11g1257 vs. NCBI nr
Match: KAE8646043.1 (hypothetical protein Csa_015641, partial [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 8.88e-20
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 41
          GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
Sbjct: 31 GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 71

[Close]

BLAST of MC11g1257 vs. NCBI nr
Match: XP_019436198.1 (PREDICTED: small nuclear ribonucleoprotein E-like isoform X2 [Lupinus angustifolius] >XP_019442208.1 PREDICTED: small nuclear ribonucleoprotein E-like isoform X2 [Lupinus angustifolius] >KAE9609830.1 putative small nuclear ribonucleoprotein E [Lupinus albus] >KAF1887590.1 hypothetical protein Lal_00040644 [Lupinus albus])

HSP 1 Score: 83.6 bits (205), Expect = 1.29e-19
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 41
          GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
Sbjct: 45 GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 85

[Close]

BLAST of MC11g1257 vs. NCBI nr
Match: MCI19947.1 (small nuclear ribonucleoprotein E-like [Trifolium medium])

HSP 1 Score: 82.4 bits (202), Expect = 1.32e-19
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 41
          GFDEYMNLVLDDAEEVNVKKKS+KTLGRILLKGDNITLMMN
Sbjct: 2  GFDEYMNLVLDDAEEVNVKKKSKKTLGRILLKGDNITLMMN 42

[Close]

BLAST of MC11g1257 vs. ExPASy TrEMBL
Match: A0A2N9ELL8 (Sm protein E OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3557 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.72e-20
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 41
          GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
Sbjct: 11 GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 51

[Close]

BLAST of MC11g1257 vs. ExPASy TrEMBL
Match: A0A6A4Q7S7 (Small nuclear ribonucleoprotein E OS=Lupinus albus OX=3870 GN=Lal_00040644 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.26e-20
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 41
          GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
Sbjct: 45 GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 85

[Close]

BLAST of MC11g1257 vs. ExPASy TrEMBL
Match: A0A392Q7T6 (Sm protein E (Fragment) OS=Trifolium medium OX=97028 PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.38e-20
Identity = 40/41 (97.56%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 41
          GFDEYMNLVLDDAEEVNVKKKS+KTLGRILLKGDNITLMMN
Sbjct: 2  GFDEYMNLVLDDAEEVNVKKKSKKTLGRILLKGDNITLMMN 42

[Close]

BLAST of MC11g1257 vs. ExPASy TrEMBL
Match: A0A445KAE2 (Small nuclear ribonucleoprotein E OS=Glycine soja OX=3848 GN=D0Y65_010367 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.60e-20
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 41
          GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
Sbjct: 45 GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 85

[Close]

BLAST of MC11g1257 vs. ExPASy TrEMBL
Match: A0A6J1DT21 (Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111023239 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.60e-20
Identity = 41/41 (100.00%), Postives = 41/41 (100.00%), Query Frame = 0


Query: 1  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 41
          GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN
Sbjct: 45 GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 85

[Close]

BLAST of MC11g1257 vs. TAIR 10
Match: AT4G30330.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 76.3 bits (186), Expect = 6.6e-15
Identity = 36/41 (87.80%), Postives = 40/41 (97.56%), Query Frame = 0


Query: 1  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 42
          GFDEYMNLVLD+AEEV++KKK+RK LGRILLKGDNITLMMN
Sbjct: 45 GFDEYMNLVLDEAEEVSIKKKTRKPLGRILLKGDNITLMMN 85

[Close]

BLAST of MC11g1257 vs. TAIR 10
Match: AT2G18740.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-14
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 0


Query: 1  GFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLMMN 42
          GFDEYMNLVLD+AEEV++KK +RK LGRILLKGDNITLMMN
Sbjct: 45 GFDEYMNLVLDEAEEVSIKKNTRKPLGRILLKGDNITLMMN 85

[Close]

BLAST of MC11g1257 vs. TAIR 10
Match: AT2G18740.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.9e-06
Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 0


Query: 1  GFDEYMNLVLDDAEEVNVKKKSRKTLG 28
          GFDEYMNLVLD+AEEV++KK +RK LG
Sbjct: 45 GFDEYMNLVLDEAEEVSIKKNTRKPLG 71

The following BLAST results are available for this feature:

BLAST of MC11g1257 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7ZUG0	1.5e-11	78.05	Small nuclear ribonucleoprotein E OS=Danio rerio OX=7955 GN=snrpe PE=3 SV=1	[more]
A4FUI2	1.9e-11	78.05	Small nuclear ribonucleoprotein E OS=Bos taurus OX=9913 GN=SNRPE PE=3 SV=1	[more]
P62303	1.9e-11	78.05	Small nuclear ribonucleoprotein E OS=Gallus gallus OX=9031 GN=SNRPE PE=3 SV=1	[more]
P62304	1.9e-11	78.05	Small nuclear ribonucleoprotein E OS=Homo sapiens OX=9606 GN=SNRPE PE=1 SV=1	[more]
P62305	1.9e-11	78.05	Small nuclear ribonucleoprotein E OS=Mus musculus OX=10090 GN=Snrpe PE=1 SV=1	[more]

BLAST of MC11g1257 vs. NCBI nr


Match Name	E-value	Identity	Description
KHN31189.1	6.20e-20	100.00	Small nuclear ribonucleoprotein E [Glycine soja]	[more]
KHN17560.1	7.63e-20	97.56	Small nuclear ribonucleoprotein E [Glycine soja]	[more]
KAE8646043.1	8.88e-20	100.00	hypothetical protein Csa_015641, partial [Cucumis sativus]	[more]
XP_019436198.1	1.29e-19	100.00	PREDICTED: small nuclear ribonucleoprotein E-like isoform X2 [Lupinus angustifol...	[more]
MCI19947.1	1.32e-19	97.56	small nuclear ribonucleoprotein E-like [Trifolium medium]	[more]

BLAST of MC11g1257 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9ELL8	2.72e-20	100.00	Sm protein E OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3557 PE=3 SV=1	[more]
A0A6A4Q7S7	6.26e-20	100.00	Small nuclear ribonucleoprotein E OS=Lupinus albus OX=3870 GN=Lal_00040644 PE=3 ...	[more]
A0A392Q7T6	6.38e-20	97.56	Sm protein E (Fragment) OS=Trifolium medium OX=97028 PE=3 SV=1	[more]
A0A445KAE2	6.60e-20	100.00	Small nuclear ribonucleoprotein E OS=Glycine soja OX=3848 GN=D0Y65_010367 PE=3 S...	[more]
A0A6J1DT21	6.60e-20	100.00	Small nuclear ribonucleoprotein E OS=Momordica charantia OX=3673 GN=LOC111023239...	[more]

BLAST of MC11g1257 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G30330.1	6.6e-15	87.80	Small nuclear ribonucleoprotein family protein	[more]
AT2G18740.1	2.5e-14	85.37	Small nuclear ribonucleoprotein family protein	[more]
AT2G18740.2	1.9e-06	77.78	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.30.30.100		coord: 1..41 e-value: 1.2E-18 score: 68.7
None	No IPR available	PANTHER	PTHR11193:SF6	SMALL NUCLEAR RIBONUCLEOPROTEIN E	coord: 1..41
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 1..39 e-value: 3.9E-13 score: 48.9
IPR027078	Small nuclear ribonucleoprotein E	PANTHER	PTHR11193	SMALL NUCLEAR RIBONUCLEOPROTEIN E	coord: 1..41
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g1257.1	MC11g1257.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0000387	spliceosomal snRNP assembly
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
cellular_component	GO:0005682	U5 snRNP
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding