MC11g1163 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1163
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	PsbP domain-containing protein
Location	MC11: 10445936 .. 10448881 (+)
RNA-Seq Expression	MC11g1163
Synteny	MC11g1163

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

CATTTTTTTACCTTCTTACATATCAAAGGTTCGATCTTCCGATCCCGCATTCAACTCAAAACAGAAAAAACTATTTGGAGTTAATTTCTTGAATGGATTGAATTGAACACTTTGAACTACATTGAAGTAAATTATTAATTTTTGATGAAGAAAACCTCTTTATCTACATGGCTCCAAACAGATGCAAAGCTCAGGTTGTGGTCTTTAAAACGTCTATAGTCCACACAAAATCAAACAACCAAATCCCTCTCTGGGCTTCCAATTTCTAATCTCTTCCATTTCATTTCATCATCCGCCATTCCTCCATTCCCAAATTCATCCGATTCAATGGGAACTTCATTATTCACCAGTTACAGATTCTCCTGCAACTTCCACCACCCAAAACTCCCTTCTCCCATTCTCCATCCCCAGTCCATTTCAGTCGCCGATGGAGAGAACCAGAGGCCGCTAGGGGATTTGAATCGGAGATCGATTTTGGCATCGGGGATTTCTTTGCTTTCTACTGCGCCATTGGGGCTGCACGACCACTGTTTGGCTGCGGTTAAGCAAGGTCTTCTGGCAGGGAGGATACCGGGATTATCCGAACCAGATGAACAGGGTTGGCTTTTATCATCTCATTGATTGCTATTTTGTAGTACCCATTTCTAGTTGGAATGTATGTGTGATTTGTGTATGTGTTTGCTTTGGTGAAATCTTCGGATTCTGTGCCATGTAGTTGTGTTGGTGAATGAGATTTAGAATGTGAATGTGGTGGATAATTTTCTGTTTCCTTTTAGGTGATGGATGTAGTTTGTTAATTGAACAGTTTCGTTTGGACTTTCAATTGTTTTATTTTGGCAACTCTGTTTTTGTAGATGTATTAATTTAGTCTCTTTTAAGTTTTATTAGTTAAAGTAAATTGTGATACAGAGGTATGGTGGTATCATATCAAGTTACCATGTCAAATTAATATTAAGGACTGAATTGATATATTTAGATAAACATAGTAGCTAAACTTAAACAATAGGGACTAAAATGTTAAAAACCACAACATACAAGGGTTAGAGTGATAATTTTGTTAAGGACAACGATACCTAAAGTGGCTTTGCTTTTGGTTTTACCCACCAAAAGGCCTCATAACAATATAGATAATTGTCCTTGATCTATATATTATGGATCACTCTCTTTCCTAACCAATGTGGGATTTTGTTTGAACACCTTGCTTTTTTGTTGGGAGGGGCCTATAGCTGAATCTCCACCGTCACTGAGAAAACAAACAGGGCTGATCATGCCATATTTTTCCATATCAAGTTGCATAGTGTTTATGCTATGCTTATGCAGTGGCAGTGCCTTGTGATCAACATAGAAAAAGTTCTACTTCATGAATCAACATCCATCTAGAAAATTCCATTTTGAGCATTTGAATGTTTTGTAACTGCTTTCCCTTTTCAACTCAAGCTCAGCATATCTGGTTTCTTGTTTGTTGCCTGCTCAGACAGGTTGGAGGACATATCGTAGACCCGACGAGAAGTCCGGTGGGCATGGCGTCGGATGGAGTCCTATTATTCCTTATGTCTTTTCAGTTCCACAAGACTGGGAAGAGGTACATGCTTTGCTTGATTTTGCCCTTATCGTCCCTGTTGAAAATGCTGATGCAAACGGAAACAAATCGCTTCTACTCTAATCAGCTTCTTCATTAAATGAAAAAACTACTTAAACTAGATCAACCATTGAAACTGATAAGATACTAACACAATCCCCTCGAGGTCGCCCCATCTGTTAGGTTGGTGCTTCAGGTGGGCTTGTGTACGTAGTCTAGGTCCTCTGTTAGGTTGGTGCTTCTACTCTACTCAGTTTCCTGACAATCAAATATTGTAGGGGCAGACAGTTGTCCTCTAAAGAGTTAATTAAAGAAAATTCAAGATATCTTCTACAATTGGCTTTGGGCCACGTCATGTTTTTCGTTGACTAGTGGGGTGAAGTGTATATATATAAGCAGAGAAAAATCCCATTGACATAGAATCTAAAATTCTCATGCTAGTTAGATAACTCTATGGAAGTTAATTTCATGTTCGTCTTGACTAAAGCATACATGATACAATGTGCATTTATGTAACAGGTTCCTGTATCAATTGCTGATCTTGGTGGGACAGAGATTGATCTTAGATTTGGAAGCTCAAAGGAAGGCCGACTCTTTGTTATCGTTGCACCTGTTCGTCGATTTTCCGATGGTGCATTTCCTCGAAATTTATGCTTCTTGTTTAGTTTGTGCATTCCCTCAAACTGATGCTTTTATTTTCATTGTCCTGTGAAGTTATCGGTGAGGATGCAACCATCGAAATGGTCGGACCCCCAGAGAAAGTAATCAACGCATTCGGGCCTGAAGTGATCGGAGAAAATGTAGAAGGAAAGGTGATAAACATGAATGTGGCAGAGCATTCTGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCACGTTTTAATCACGGCGACAGCGGCGGGAAATCGTCTATATCTCTTCAATGTAACAGCAAATGGTAAGAGCCTTTATCAAGAACCTTGCTGATATGATATGGCTTAAATTACATAAGTTTTCCAGCTGAACTGAAGAAGCTTTTCTCCCGGGATTTTACAGGTCTTCAATGGAAGAGACATTACGGCGACTTGAAAAGGATAGCGGATTCTTTCCGTGTCGTGTGATGAAGTTCTTTGGGAGCTGAAATGGAAGTACATATACAGTGTGATTTACAGGGCAAACTTTAAGGATTATGTTAAAGCCTTCAAGTTTTTGCTTGATTTGTTGCCTCTTTTAGTCATATGGTGGCTGAGACATGGCTTTGATATATACCTAGTTGTAGTTGTATCGATGAGAGATAATTCAAATTATTATGTTAAGTAATTGCAAGTGAAAGAGTTTGATGGAAAATTATGAGCCCGGTAATGCTCCCATTTCTTGTTTCTC

mRNA sequence

CATTTTTTTACCTTCTTACATATCAAAGGTTCGATCTTCCGATCCCGCATTCAACTCAAAACAGAAAAAACTATTTGGAGTTAATTTCTTGAATGGATTGAATTGAACACTTTGAACTACATTGAAGTAAATTATTAATTTTTGATGAAGAAAACCTCTTTATCTACATGGCTCCAAACAGATGCAAAGCTCAGGTTGTGGTCTTTAAAACGTCTATAGTCCACACAAAATCAAACAACCAAATCCCTCTCTGGGCTTCCAATTTCTAATCTCTTCCATTTCATTTCATCATCCGCCATTCCTCCATTCCCAAATTCATCCGATTCAATGGGAACTTCATTATTCACCAGTTACAGATTCTCCTGCAACTTCCACCACCCAAAACTCCCTTCTCCCATTCTCCATCCCCAGTCCATTTCAGTCGCCGATGGAGAGAACCAGAGGCCGCTAGGGGATTTGAATCGGAGATCGATTTTGGCATCGGGGATTTCTTTGCTTTCTACTGCGCCATTGGGGCTGCACGACCACTGTTTGGCTGCGGTTAAGCAAGGTCTTCTGGCAGGGAGGATACCGGGATTATCCGAACCAGATGAACAGGGTTGGAGGACATATCGTAGACCCGACGAGAAGTCCGGTGGGCATGGCGTCGGATGGAGTCCTATTATTCCTTATGTCTTTTCAGTTCCACAAGACTGGGAAGAGGTTCCTGTATCAATTGCTGATCTTGGTGGGACAGAGATTGATCTTAGATTTGGAAGCTCAAAGGAAGGCCGACTCTTTGTTATCGTTGCACCTGTTCGTCGATTTTCCGATGTTATCGGTGAGGATGCAACCATCGAAATGGTCGGACCCCCAGAGAAAGTAATCAACGCATTCGGGCCTGAAGTGATCGGAGAAAATGTAGAAGGAAAGGTGATAAACATGAATGTGGCAGAGCATTCTGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCACGTTTTAATCACGGCGACAGCGGCGGGAAATCGTCTATATCTCTTCAATGTAACAGCAAATGGTCTTCAATGGAAGAGACATTACGGCGACTTGAAAAGGATAGCGGATTCTTTCCGTGTCGTGTGATGAAGTTCTTTGGGAGCTGAAATGGAAGTACATATACAGTGTGATTTACAGGGCAAACTTTAAGGATTATGTTAAAGCCTTCAAGTTTTTGCTTGATTTGTTGCCTCTTTTAGTCATATGGTGGCTGAGACATGGCTTTGATATATACCTAGTTGTAGTTGTATCGATGAGAGATAATTCAAATTATTATGTTAAGTAATTGCAAGTGAAAGAGTTTGATGGAAAATTATGAGCCCGGTAATGCTCCCATTTCTTGTTTCTC

Coding sequence (CDS)

ATGGGAACTTCATTATTCACCAGTTACAGATTCTCCTGCAACTTCCACCACCCAAAACTCCCTTCTCCCATTCTCCATCCCCAGTCCATTTCAGTCGCCGATGGAGAGAACCAGAGGCCGCTAGGGGATTTGAATCGGAGATCGATTTTGGCATCGGGGATTTCTTTGCTTTCTACTGCGCCATTGGGGCTGCACGACCACTGTTTGGCTGCGGTTAAGCAAGGTCTTCTGGCAGGGAGGATACCGGGATTATCCGAACCAGATGAACAGGGTTGGAGGACATATCGTAGACCCGACGAGAAGTCCGGTGGGCATGGCGTCGGATGGAGTCCTATTATTCCTTATGTCTTTTCAGTTCCACAAGACTGGGAAGAGGTTCCTGTATCAATTGCTGATCTTGGTGGGACAGAGATTGATCTTAGATTTGGAAGCTCAAAGGAAGGCCGACTCTTTGTTATCGTTGCACCTGTTCGTCGATTTTCCGATGTTATCGGTGAGGATGCAACCATCGAAATGGTCGGACCCCCAGAGAAAGTAATCAACGCATTCGGGCCTGAAGTGATCGGAGAAAATGTAGAAGGAAAGGTGATAAACATGAATGTGGCAGAGCATTCTGGAAGAACATATTATCAGTTTGAATTGGAGCCTCCTCACGTTTTAATCACGGCGACAGCGGCGGGAAATCGTCTATATCTCTTCAATGTAACAGCAAATGGTCTTCAATGGAAGAGACATTACGGCGACTTGAAAAGGATAGCGGATTCTTTCCGTGTCGTGTGA

Protein sequence

MGTSLFTSYRFSCNFHHPKLPSPILHPQSISVADGENQRPLGDLNRRSILASGISLLSTAPLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYVFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVINAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNVTANGLQWKRHYGDLKRIADSFRVV

Homology

[Close]

BLAST of MC11g1163 vs. ExPASy Swiss-Prot
Match: O49292 (PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD4 PE=1 SV=2)

HSP 1 Score: 357.1 bits (915), Expect = 1.7e-97
Identity = 172/216 (79.63%), Postives = 187/216 (86.57%), Query Frame = 0


Query: 44  LNRRSILASGISLLSTAPLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSG 103
           L+RRS++ASG+ + ST  L      LA VKQGLLAGR+PGLSEPDE+GWRTYRRPDEKSG
Sbjct: 46  LSRRSVMASGL-VSSTTALAFPREGLAVVKQGLLAGRVPGLSEPDEEGWRTYRRPDEKSG 105

Query: 104 GHGVGWSPIIPYVFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDV 163
           GHGVGWSPIIPY FSVPQDW EVPVSIADLGGTEIDLRF S KEGRL VIVAPV RF+D 
Sbjct: 106 GHGVGWSPIIPYAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVIVAPVLRFADN 165

Query: 164 IGEDATIEMVGPPEKVINAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITA 223
           +G+D  IE +G P KVINAFGPEVIGENVEGKV++ NVAEH GR YYQFELEPPHVLITA
Sbjct: 166 LGDDVKIENIGQPAKVINAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFELEPPHVLITA 225

Query: 224 TAAGNRLYLFNVTANGLQWKRHYGDLKRIADSFRVV 260
           TAAGNRLYLF+VT NGLQWKRHY DLKRIA SFR+V
Sbjct: 226 TAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRIV 260

[Close]

BLAST of MC11g1163 vs. ExPASy Swiss-Prot
Match: Q9LXX5 (PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD6 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.5e-16
Identity = 66/256 (25.78%), Postives = 127/256 (49.61%), Query Frame = 0


Query: 18  PKLPSPILHPQSISVADGENQRPLGDLNRRSILASGISLLSTAPLGLHDHCLAAVKQGLL 77
           PK  + I     + VA  + Q+      R  +L S +++   A L L +  ++A ++  +
Sbjct: 17  PKSSASIKARSRVVVASSQQQQQ--PRRRELLLKSAVAI--PAILQLKEAPISAAREVEV 76

Query: 78  AGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYVFSVPQDWEEVPVSIADLGG-- 137
              +P    P +  +  ++     +     G   + PY F +P +W+++ ++    G   
Sbjct: 77  GSYLP--LSPSDPSFVLFKAKPSDTPALRAG--NVQPYQFVLPPNWKQLRIANILSGNYC 136

Query: 138 ------TEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVINAFGPEVIG 197
                   I+++F + K+G++ V+ +P+ R ++    +ATIE +G PEKVI + GP V G
Sbjct: 137 QPKCAEPWIEVKFENEKQGKVQVVASPLIRLTN--KPNATIEDLGEPEKVIASLGPFVTG 196

Query: 198 ENVEG-KVINMNVAEHSGRTYYQFELEPP------HVLITATAAGNRLYLFNVTANGLQW 257
            + +  +++  ++ +   +TYY++ LE P      H L  ATA G+ + LF V+A   QW
Sbjct: 197 NSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVVLFVVSATEKQW 256

Query: 258 KRHYGDLKRIADSFRV 259
           +     L+ I DSF++
Sbjct: 257 QSSQKTLEAILDSFQL 262

[Close]

BLAST of MC11g1163 vs. NCBI nr
Match: XP_022154428.1 (psbP domain-containing protein 4, chloroplastic [Momordica charantia])

HSP 1 Score: 536 bits (1380), Expect = 2.59e-192
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MGTSLFTSYRFSCNFHHPKLPSPILHPQSISVADGENQRPLGDLNRRSILASGISLLSTA 60
           MGTSLFTSYRFSCNFHHPKLPSPILHPQSISVADGENQRPLGDLNRRSILASGISLLSTA
Sbjct: 1   MGTSLFTSYRFSCNFHHPKLPSPILHPQSISVADGENQRPLGDLNRRSILASGISLLSTA 60

Query: 61  PLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYVFSVP 120
           PLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYVFSVP
Sbjct: 61  PLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYVFSVP 120

Query: 121 QDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVI 180
           QDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVI
Sbjct: 121 QDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVI 180

Query: 181 NAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNVTANGL 240
           NAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNVTANGL
Sbjct: 181 NAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNVTANGL 240

Query: 241 QWKRHYGDLKRIADSFRVV 259
           QWKRHYGDLKRIADSFRVV
Sbjct: 241 QWKRHYGDLKRIADSFRVV 259

[Close]

BLAST of MC11g1163 vs. NCBI nr
Match: XP_038896887.1 (psbP domain-containing protein 4, chloroplastic [Benincasa hispida])

HSP 1 Score: 442 bits (1136), Expect = 5.39e-155
Identity = 221/267 (82.77%), Postives = 233/267 (87.27%), Query Frame = 0


Query: 1   MGTSLFTSYRFSCNFHHPKLPSPILHPQSI------SVADGENQRP--LGDLNRRSILAS 60
           MGT+LFT   F    H P LPSP+LHP S       +V  G+ + P     LNRR +L S
Sbjct: 1   MGTTLFTINPFFSFCHQPNLPSPLLHPNSFLPKPVSAVHGGQQENPNLSPTLNRRWVLVS 60

Query: 61  GISLLSTAPLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120
           G+SLLS+A LGL   CLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI
Sbjct: 61  GVSLLSSAALGLPKDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120

Query: 121 IPYVFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEM 180
           IPY FSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEM
Sbjct: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEM 180

Query: 181 VGPPEKVINAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYL 240
           VGPPEKVINAFGPEVIGENVEGKVI+M+VAEHSGRTYYQFELEPPHV+ITATAAGNRLYL
Sbjct: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240

Query: 241 FNVTANGLQWKRHYGDLKRIADSFRVV 259
           F+VTANGLQWKRHY DLKRIADSFRVV
Sbjct: 241 FSVTANGLQWKRHYSDLKRIADSFRVV 267

[Close]

BLAST of MC11g1163 vs. NCBI nr
Match: XP_004139653.1 (psbP domain-containing protein 4, chloroplastic isoform X1 [Cucumis sativus] >KGN44513.1 hypothetical protein Csa_015810 [Cucumis sativus])

HSP 1 Score: 438 bits (1127), Expect = 1.27e-153
Identity = 219/267 (82.02%), Postives = 233/267 (87.27%), Query Frame = 0


Query: 1   MGTSLFTSYRFSCNFHHPKLPSPILHP-----QSISVADG-ENQRPLGD--LNRRSILAS 60
           MGT+LF +  FS  FHH  LPSP L P     + +S   G  NQ P+    LNRR  L S
Sbjct: 1   MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGAHNQNPISSTALNRRWALVS 60

Query: 61  GISLLSTAPLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120
           G+SLLS+A LGL + CLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI
Sbjct: 61  GVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120

Query: 121 IPYVFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEM 180
           IPY FSVPQDWEEVPVSIADLGGTEIDLRFGS KEGR+FV+VAPVRRFSDVIGEDATIEM
Sbjct: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEM 180

Query: 181 VGPPEKVINAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYL 240
           VGPPEKVINAFGPEVIGENVEGKVI+M+VAEHSGRTYYQFELEPPHV+ITATAAGNRLYL
Sbjct: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240

Query: 241 FNVTANGLQWKRHYGDLKRIADSFRVV 259
           FNVTANGLQWKRHY DLKRIADSFR+V
Sbjct: 241 FNVTANGLQWKRHYNDLKRIADSFRIV 267

[Close]

BLAST of MC11g1163 vs. NCBI nr
Match: XP_022975015.1 (psbP domain-containing protein 4, chloroplastic [Cucurbita maxima])

HSP 1 Score: 436 bits (1120), Expect = 1.07e-152
Identity = 212/259 (81.85%), Postives = 230/259 (88.80%), Query Frame = 0


Query: 1   MGTSLFTSYRFSCNFHHPKLPSPILHPQSISVADGENQRPLGDLNRRSILASGISLLSTA 60
           MG+++F +  FSCNFH  K PS IL  + +    GE +     LNRRS+L SG+SL+S+A
Sbjct: 1   MGSTMFATVPFSCNFHQSKPPSQILQ-KGVPAVGGEKENRSPILNRRSVLLSGVSLVSSA 60

Query: 61  PLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYVFSVP 120
            LGL   CLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY FSVP
Sbjct: 61  GLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVP 120

Query: 121 QDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVI 180
           QDWEEVPVSIADLGGTEIDLRF SSKEGRLFVIVAPV+RFSDVIG+DATIEMVGPPEKVI
Sbjct: 121 QDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVI 180

Query: 181 NAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNVTANGL 240
           +AFGPEVIGENVEGKV+NM+VAEH+GRTYYQFELEPPHVLITATAAGNRLYLF+VT NGL
Sbjct: 181 SAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGL 240

Query: 241 QWKRHYGDLKRIADSFRVV 259
           QWKRHY DLKRIADSFRVV
Sbjct: 241 QWKRHYSDLKRIADSFRVV 258

[Close]

BLAST of MC11g1163 vs. NCBI nr
Match: XP_022936523.1 (psbP domain-containing protein 4, chloroplastic [Cucurbita moschata] >KAG7025035.1 PsbP domain-containing protein 4, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 434 bits (1116), Expect = 4.34e-152
Identity = 212/259 (81.85%), Postives = 229/259 (88.42%), Query Frame = 0


Query: 1   MGTSLFTSYRFSCNFHHPKLPSPILHPQSISVADGENQRPLGDLNRRSILASGISLLSTA 60
           MG+++F S  FSCNFH  K PS IL  + +    GE       LNRRS+L SG+SL+S+A
Sbjct: 1   MGSTMFASVPFSCNFHQSKPPSHILQ-KGVPAVGGEKDNRSPILNRRSVLLSGVSLVSSA 60

Query: 61  PLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYVFSVP 120
            LGL   CLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY FSVP
Sbjct: 61  GLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVP 120

Query: 121 QDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVI 180
           QDWEEVPVSIADLGGTEIDLRF SSKEGRLFVIVAPV+RFSDVIG+DATIEMVGPPEKVI
Sbjct: 121 QDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVI 180

Query: 181 NAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNVTANGL 240
           +AFGPEVIGENVEGKV+NM+VAEH+GRTYYQFELEPPHVLITATAAGNRLYLF+VT NGL
Sbjct: 181 SAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGL 240

Query: 241 QWKRHYGDLKRIADSFRVV 259
           QWKRH+ DLKRIADSFRVV
Sbjct: 241 QWKRHFSDLKRIADSFRVV 258

[Close]

BLAST of MC11g1163 vs. ExPASy TrEMBL
Match: A0A6J1DKA3 (psbP domain-containing protein 4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021699 PE=4 SV=1)

HSP 1 Score: 536 bits (1380), Expect = 1.25e-192
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0


Query: 1   MGTSLFTSYRFSCNFHHPKLPSPILHPQSISVADGENQRPLGDLNRRSILASGISLLSTA 60
           MGTSLFTSYRFSCNFHHPKLPSPILHPQSISVADGENQRPLGDLNRRSILASGISLLSTA
Sbjct: 1   MGTSLFTSYRFSCNFHHPKLPSPILHPQSISVADGENQRPLGDLNRRSILASGISLLSTA 60

Query: 61  PLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYVFSVP 120
           PLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYVFSVP
Sbjct: 61  PLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYVFSVP 120

Query: 121 QDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVI 180
           QDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVI
Sbjct: 121 QDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVI 180

Query: 181 NAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNVTANGL 240
           NAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNVTANGL
Sbjct: 181 NAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNVTANGL 240

Query: 241 QWKRHYGDLKRIADSFRVV 259
           QWKRHYGDLKRIADSFRVV
Sbjct: 241 QWKRHYGDLKRIADSFRVV 259

[Close]

BLAST of MC11g1163 vs. ExPASy TrEMBL
Match: A0A0A0K501 (PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G322590 PE=4 SV=1)

HSP 1 Score: 438 bits (1127), Expect = 6.14e-154
Identity = 219/267 (82.02%), Postives = 233/267 (87.27%), Query Frame = 0


Query: 1   MGTSLFTSYRFSCNFHHPKLPSPILHP-----QSISVADG-ENQRPLGD--LNRRSILAS 60
           MGT+LF +  FS  FHH  LPSP L P     + +S   G  NQ P+    LNRR  L S
Sbjct: 1   MGTTLFITNPFSSIFHHQYLPSPHLPPHHFLPKRVSAVHGAHNQNPISSTALNRRWALVS 60

Query: 61  GISLLSTAPLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120
           G+SLLS+A LGL + CLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI
Sbjct: 61  GVSLLSSAALGLQNDCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPI 120

Query: 121 IPYVFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEM 180
           IPY FSVPQDWEEVPVSIADLGGTEIDLRFGS KEGR+FV+VAPVRRFSDVIGEDATIEM
Sbjct: 121 IPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRVFVVVAPVRRFSDVIGEDATIEM 180

Query: 181 VGPPEKVINAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYL 240
           VGPPEKVINAFGPEVIGENVEGKVI+M+VAEHSGRTYYQFELEPPHV+ITATAAGNRLYL
Sbjct: 181 VGPPEKVINAFGPEVIGENVEGKVISMSVAEHSGRTYYQFELEPPHVIITATAAGNRLYL 240

Query: 241 FNVTANGLQWKRHYGDLKRIADSFRVV 259
           FNVTANGLQWKRHY DLKRIADSFR+V
Sbjct: 241 FNVTANGLQWKRHYNDLKRIADSFRIV 267

[Close]

BLAST of MC11g1163 vs. ExPASy TrEMBL
Match: A0A6J1IFH3 (psbP domain-containing protein 4, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111473925 PE=4 SV=1)

HSP 1 Score: 436 bits (1120), Expect = 5.17e-153
Identity = 212/259 (81.85%), Postives = 230/259 (88.80%), Query Frame = 0


Query: 1   MGTSLFTSYRFSCNFHHPKLPSPILHPQSISVADGENQRPLGDLNRRSILASGISLLSTA 60
           MG+++F +  FSCNFH  K PS IL  + +    GE +     LNRRS+L SG+SL+S+A
Sbjct: 1   MGSTMFATVPFSCNFHQSKPPSQILQ-KGVPAVGGEKENRSPILNRRSVLLSGVSLVSSA 60

Query: 61  PLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYVFSVP 120
            LGL   CLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY FSVP
Sbjct: 61  GLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVP 120

Query: 121 QDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVI 180
           QDWEEVPVSIADLGGTEIDLRF SSKEGRLFVIVAPV+RFSDVIG+DATIEMVGPPEKVI
Sbjct: 121 QDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVI 180

Query: 181 NAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNVTANGL 240
           +AFGPEVIGENVEGKV+NM+VAEH+GRTYYQFELEPPHVLITATAAGNRLYLF+VT NGL
Sbjct: 181 SAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGL 240

Query: 241 QWKRHYGDLKRIADSFRVV 259
           QWKRHY DLKRIADSFRVV
Sbjct: 241 QWKRHYSDLKRIADSFRVV 258

[Close]

BLAST of MC11g1163 vs. ExPASy TrEMBL
Match: A0A6J1FDH1 (psbP domain-containing protein 4, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111443110 PE=4 SV=1)

HSP 1 Score: 434 bits (1116), Expect = 2.10e-152
Identity = 212/259 (81.85%), Postives = 229/259 (88.42%), Query Frame = 0


Query: 1   MGTSLFTSYRFSCNFHHPKLPSPILHPQSISVADGENQRPLGDLNRRSILASGISLLSTA 60
           MG+++F S  FSCNFH  K PS IL  + +    GE       LNRRS+L SG+SL+S+A
Sbjct: 1   MGSTMFASVPFSCNFHQSKPPSHILQ-KGVPAVGGEKDNRSPILNRRSVLLSGVSLVSSA 60

Query: 61  PLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYVFSVP 120
            LGL   CLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPY FSVP
Sbjct: 61  GLGLQSECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYAFSVP 120

Query: 121 QDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVI 180
           QDWEEVPVSIADLGGTEIDLRF SSKEGRLFVIVAPV+RFSDVIG+DATIEMVGPPEKVI
Sbjct: 121 QDWEEVPVSIADLGGTEIDLRFKSSKEGRLFVIVAPVQRFSDVIGDDATIEMVGPPEKVI 180

Query: 181 NAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLYLFNVTANGL 240
           +AFGPEVIGENVEGKV+NM+VAEH+GRTYYQFELEPPHVLITATAAGNRLYLF+VT NGL
Sbjct: 181 SAFGPEVIGENVEGKVMNMSVAEHNGRTYYQFELEPPHVLITATAAGNRLYLFSVTGNGL 240

Query: 241 QWKRHYGDLKRIADSFRVV 259
           QWKRH+ DLKRIADSFRVV
Sbjct: 241 QWKRHFSDLKRIADSFRVV 258

[Close]

BLAST of MC11g1163 vs. ExPASy TrEMBL
Match: A0A5A7T2U1 (PsbP domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1784G00200 PE=4 SV=1)

HSP 1 Score: 433 bits (1113), Expect = 8.63e-152
Identity = 218/268 (81.34%), Postives = 232/268 (86.57%), Query Frame = 0


Query: 1   MGTS-LFTSYRFSCNFHHPKLPSPILHPQSI------SVADGENQRPLGD--LNRRSILA 60
           MGT+ LF +  FS  FH   LPSP+LHP         ++    NQ P+    L RR +L 
Sbjct: 1   MGTTALFITNPFSSIFHQQNLPSPLLHPHRFLPKRVSALHRAHNQNPISSPALIRRWVLV 60

Query: 61  SGISLLSTAPLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120
           SG+SLLS+A LGL + CLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP
Sbjct: 61  SGVSLLSSAALGLQNECLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSP 120

Query: 121 IIPYVFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIE 180
           IIPY FSVPQDWEEVPVSIADLGGTEIDLRFGS KEGRLFVIVAPVRRFSDVIGEDATIE
Sbjct: 121 IIPYAFSVPQDWEEVPVSIADLGGTEIDLRFGSLKEGRLFVIVAPVRRFSDVIGEDATIE 180

Query: 181 MVGPPEKVINAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITATAAGNRLY 240
           MVGPPEKVINAFGPEVIGENVEGKVI+M+VAE+SGRTYYQFELEPPHV+ITATAAGNRLY
Sbjct: 181 MVGPPEKVINAFGPEVIGENVEGKVISMSVAEYSGRTYYQFELEPPHVIITATAAGNRLY 240

Query: 241 LFNVTANGLQWKRHYGDLKRIADSFRVV 259
           LFNVTANGLQWKRHY DLKRIADSFRVV
Sbjct: 241 LFNVTANGLQWKRHYKDLKRIADSFRVV 268

[Close]

BLAST of MC11g1163 vs. TAIR 10
Match: AT1G77090.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 357.1 bits (915), Expect = 1.2e-98
Identity = 172/216 (79.63%), Postives = 187/216 (86.57%), Query Frame = 0


Query: 44  LNRRSILASGISLLSTAPLGLHDHCLAAVKQGLLAGRIPGLSEPDEQGWRTYRRPDEKSG 103
           L+RRS++ASG+ + ST  L      LA VKQGLLAGR+PGLSEPDE+GWRTYRRPDEKSG
Sbjct: 46  LSRRSVMASGL-VSSTTALAFPREGLAVVKQGLLAGRVPGLSEPDEEGWRTYRRPDEKSG 105

Query: 104 GHGVGWSPIIPYVFSVPQDWEEVPVSIADLGGTEIDLRFGSSKEGRLFVIVAPVRRFSDV 163
           GHGVGWSPIIPY FSVPQDW EVPVSIADLGGTEIDLRF S KEGRL VIVAPV RF+D 
Sbjct: 106 GHGVGWSPIIPYAFSVPQDWNEVPVSIADLGGTEIDLRFASPKEGRLSVIVAPVLRFADN 165

Query: 164 IGEDATIEMVGPPEKVINAFGPEVIGENVEGKVINMNVAEHSGRTYYQFELEPPHVLITA 223
           +G+D  IE +G P KVINAFGPEVIGENVEGKV++ NVAEH GR YYQFELEPPHVLITA
Sbjct: 166 LGDDVKIENIGQPAKVINAFGPEVIGENVEGKVLSSNVAEHDGRLYYQFELEPPHVLITA 225

Query: 224 TAAGNRLYLFNVTANGLQWKRHYGDLKRIADSFRVV 260
           TAAGNRLYLF+VT NGLQWKRHY DLKRIA SFR+V
Sbjct: 226 TAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRIV 260

[Close]

BLAST of MC11g1163 vs. TAIR 10
Match: AT3G56650.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.8e-17
Identity = 66/256 (25.78%), Postives = 127/256 (49.61%), Query Frame = 0


Query: 18  PKLPSPILHPQSISVADGENQRPLGDLNRRSILASGISLLSTAPLGLHDHCLAAVKQGLL 77
           PK  + I     + VA  + Q+      R  +L S +++   A L L +  ++A ++  +
Sbjct: 17  PKSSASIKARSRVVVASSQQQQQ--PRRRELLLKSAVAI--PAILQLKEAPISAAREVEV 76

Query: 78  AGRIPGLSEPDEQGWRTYRRPDEKSGGHGVGWSPIIPYVFSVPQDWEEVPVSIADLGG-- 137
              +P    P +  +  ++     +     G   + PY F +P +W+++ ++    G   
Sbjct: 77  GSYLP--LSPSDPSFVLFKAKPSDTPALRAG--NVQPYQFVLPPNWKQLRIANILSGNYC 136

Query: 138 ------TEIDLRFGSSKEGRLFVIVAPVRRFSDVIGEDATIEMVGPPEKVINAFGPEVIG 197
                   I+++F + K+G++ V+ +P+ R ++    +ATIE +G PEKVI + GP V G
Sbjct: 137 QPKCAEPWIEVKFENEKQGKVQVVASPLIRLTN--KPNATIEDLGEPEKVIASLGPFVTG 196

Query: 198 ENVEG-KVINMNVAEHSGRTYYQFELEPP------HVLITATAAGNRLYLFNVTANGLQW 257
            + +  +++  ++ +   +TYY++ LE P      H L  ATA G+ + LF V+A   QW
Sbjct: 197 NSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVVLFVVSATEKQW 256

Query: 258 KRHYGDLKRIADSFRV 259
           +     L+ I DSF++
Sbjct: 257 QSSQKTLEAILDSFQL 262

The following BLAST results are available for this feature:

BLAST of MC11g1163 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49292	1.7e-97	79.63	PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LXX5	2.5e-16	25.78	PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of MC11g1163 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154428.1	2.59e-192	100.00	psbP domain-containing protein 4, chloroplastic [Momordica charantia]	[more]
XP_038896887.1	5.39e-155	82.77	psbP domain-containing protein 4, chloroplastic [Benincasa hispida]	[more]
XP_004139653.1	1.27e-153	82.02	psbP domain-containing protein 4, chloroplastic isoform X1 [Cucumis sativus] >KG...	[more]
XP_022975015.1	1.07e-152	81.85	psbP domain-containing protein 4, chloroplastic [Cucurbita maxima]	[more]
XP_022936523.1	4.34e-152	81.85	psbP domain-containing protein 4, chloroplastic [Cucurbita moschata] >KAG7025035...	[more]

BLAST of MC11g1163 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DKA3	1.25e-192	100.00	psbP domain-containing protein 4, chloroplastic OS=Momordica charantia OX=3673 G...	[more]
A0A0A0K501	6.14e-154	82.02	PsbP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G322590 PE=4 S...	[more]
A0A6J1IFH3	5.17e-153	81.85	psbP domain-containing protein 4, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FDH1	2.10e-152	81.85	psbP domain-containing protein 4, chloroplastic OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5A7T2U1	8.63e-152	81.34	PsbP domain-containing protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]

BLAST of MC11g1163 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G77090.1	1.2e-98	79.63	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]
AT3G56650.1	1.8e-17	25.78	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 115..258 e-value: 1.1E-11 score: 45.1
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 111..259 e-value: 5.3E-25 score: 90.3
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 34..259
None	No IPR available	PANTHER	PTHR31407:SF38	PSBP DOMAIN-CONTAINING PROTEIN 4, CHLOROPLASTIC	coord: 34..259
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 107..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g1163.1	MC11g1163.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding