MC11g1068 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g1068
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	AvrRpt-cleavage domain-containing protein
Location	MC11: 9112307 .. 9112489 (+)
RNA-Seq Expression	MC11g1068
Synteny	MC11g1068

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GACAAAGGTCGGCCATTGCCAAAATTTGGAGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGATTCACTGTGATCTTTAACAAAGCTAGAGATGAAAAAAAAACAGGTGGAAAACCCGATTCTCCTGGAAAAGTTGATGCACGGGGCAGGCCGGGAGCAGATCCTTCCAAGGCACCGCCT

mRNA sequence

GACAAAGGTCGGCCATTGCCAAAATTTGGAGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGATTCACTGTGATCTTTAACAAAGCTAGAGATGAAAAAAAAACAGGTGGAAAACCCGATTCTCCTGGAAAAGTTGATGCACGGGGCAGGCCGGGAGCAGATCCTTCCAAGGCACCGCCT

Coding sequence (CDS)

GACAAAGGTCGGCCATTGCCAAAATTTGGAGAGTGGGATGTTAATGATCCGACATCAGCTGAGGGATTCACTGTGATCTTTAACAAAGCTAGAGATGAAAAAAAAACAGGTGGAAAACCCGATTCTCCTGGAAAAGTTGATGCACGGGGCAGGCCGGGAGCAGATCCTTCCAAGGCACCGCCT

Protein sequence

DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAPP

Homology

[Close]

BLAST of MC11g1068 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 4.9e-19
Identity = 50/64 (78.12%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGR---PGADPS 60
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  + G     G DPS
Sbjct: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGK-SSEGHVKSGGGDPS 62

Query: 61 KAPP 62
          K  P
Sbjct: 63 KPQP 65

[Close]

BLAST of MC11g1068 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 4.7e-06
Identity = 20/37 (54.05%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 1   DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTG 38
           +K   +PKFG+WD N+P+SA+G+T IFNK R+E+ +G
Sbjct: 143 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSG 179

[Close]

BLAST of MC11g1068 vs. NCBI nr
Match: XP_022139562.1 (RPM1-interacting protein 4 [Momordica charantia])

HSP 1 Score: 128 bits (321), Expect = 4.80e-37
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 62

[Close]

BLAST of MC11g1068 vs. NCBI nr
Match: KAG7037321.1 (RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 123 bits (309), Expect = 2.53e-35
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA+GRPGA+P+KAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAP 62

[Close]

BLAST of MC11g1068 vs. NCBI nr
Match: XP_022941007.1 (RPM1-interacting protein 4-like [Cucurbita moschata] >XP_022981664.1 RPM1-interacting protein 4-like [Cucurbita maxima] >XP_023525056.1 RPM1-interacting protein 4-like [Cucurbita pepo subsp. pepo] >KAG6607743.1 Protein NOI4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123 bits (309), Expect = 3.26e-35
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA+GRPGA+P+KAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAP 62

[Close]

BLAST of MC11g1068 vs. NCBI nr
Match: XP_038897827.1 (protein NOI4 [Benincasa hispida])

HSP 1 Score: 122 bits (307), Expect = 6.58e-35
Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA GRP ADP+KAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAHGRPAADPAKAP 62

[Close]

BLAST of MC11g1068 vs. NCBI nr
Match: XP_022936748.1 (uncharacterized protein LOC111443250 [Cucurbita moschata] >XP_022975427.1 uncharacterized protein LOC111474733 isoform X2 [Cucurbita maxima] >XP_023535778.1 uncharacterized protein LOC111797108 isoform X2 [Cucurbita pepo subsp. pepo] >KAG6592101.1 Protein NOI4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122 bits (306), Expect = 9.35e-35
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA+GR GADP+KAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAP 62

[Close]

BLAST of MC11g1068 vs. ExPASy TrEMBL
Match: A0A6J1CEA3 (RPM1-interacting protein 4 OS=Momordica charantia OX=3673 GN=LOC111010436 PE=4 SV=1)

HSP 1 Score: 128 bits (321), Expect = 2.32e-37
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 62

[Close]

BLAST of MC11g1068 vs. ExPASy TrEMBL
Match: A0A6J1J2H2 (RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111480718 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 1.58e-35
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA+GRPGA+P+KAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAP 62

[Close]

BLAST of MC11g1068 vs. ExPASy TrEMBL
Match: A0A6J1FL74 (RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111446421 PE=4 SV=1)

HSP 1 Score: 123 bits (309), Expect = 1.58e-35
Identity = 58/61 (95.08%), Postives = 61/61 (100.00%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA+GRPGA+P+KAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRPGANPAKAP 62

[Close]

BLAST of MC11g1068 vs. ExPASy TrEMBL
Match: A0A6J1ID15 (uncharacterized protein LOC111474733 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111474733 PE=4 SV=1)

HSP 1 Score: 122 bits (306), Expect = 4.53e-35
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA+GR GADP+KAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAP 62

[Close]

BLAST of MC11g1068 vs. ExPASy TrEMBL
Match: A0A6J1FE40 (uncharacterized protein LOC111443250 OS=Cucurbita moschata OX=3662 GN=LOC111443250 PE=4 SV=1)

HSP 1 Score: 122 bits (306), Expect = 4.53e-35
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGRPGADPSKAP 60
          DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDA+GR GADP+KAP
Sbjct: 3  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDAQGRSGADPAKAP 62

[Close]

BLAST of MC11g1068 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 94.4 bits (233), Expect = 3.5e-20
Identity = 50/64 (78.12%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGR---PGADPS 60
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  + G     G DPS
Sbjct: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGK-SSEGHVKSGGGDPS 62

Query: 61 KAPP 62
          K  P
Sbjct: 63 KPQP 65

[Close]

BLAST of MC11g1068 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 94.4 bits (233), Expect = 3.5e-20
Identity = 50/64 (78.12%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGR---PGADPS 60
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  + G     G DPS
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGK-SSEGHVKSGGGDPS 78

Query: 61 KAPP 62
          K  P
Sbjct: 79 KPQP 81

[Close]

BLAST of MC11g1068 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 94.4 bits (233), Expect = 3.5e-20
Identity = 50/64 (78.12%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGKVDARGR---PGADPS 60
          DKGRPLPKFGEWDVNDP SAEGFTVIFNKARDEKKTGGKP SPGK  + G     G DPS
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGK-SSEGHVKSGGGDPS 78

Query: 61 KAPP 62
          K  P
Sbjct: 79 KPQP 81

[Close]

BLAST of MC11g1068 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 89.7 bits (221), Expect = 8.6e-19
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKTGGKPDSPGK 46
          DKGRPLPKFGEWDVNDP+SAEGFTVIFNKAR+EKK GGK DSPGK
Sbjct: 3  DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGK 47

[Close]

BLAST of MC11g1068 vs. TAIR 10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-12
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 1  DKGRPLPKFGEWDVNDPTSAEGFTVIFNKARDEKKT----GGKPDS 43
          +KG+PLPKFGEWDVN+P SAEGFTVIF+KA DEKKT    G  P+S
Sbjct: 4  NKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNS 49

The following BLAST results are available for this feature:

BLAST of MC11g1068 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22633	4.9e-19	78.13	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]
Q8GYN5	4.7e-06	54.05	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]

BLAST of MC11g1068 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139562.1	4.80e-37	100.00	RPM1-interacting protein 4 [Momordica charantia]	[more]
KAG7037321.1	2.53e-35	95.08	RPM1-interacting protein 4 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022941007.1	3.26e-35	95.08	RPM1-interacting protein 4-like [Cucurbita moschata] >XP_022981664.1 RPM1-intera...	[more]
XP_038897827.1	6.58e-35	95.08	protein NOI4 [Benincasa hispida]	[more]
XP_022936748.1	9.35e-35	95.08	uncharacterized protein LOC111443250 [Cucurbita moschata] >XP_022975427.1 unchar...	[more]

BLAST of MC11g1068 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CEA3	2.32e-37	100.00	RPM1-interacting protein 4 OS=Momordica charantia OX=3673 GN=LOC111010436 PE=4 S...	[more]
A0A6J1J2H2	1.58e-35	95.08	RPM1-interacting protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111480718 PE=4...	[more]
A0A6J1FL74	1.58e-35	95.08	RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111446421 PE...	[more]
A0A6J1ID15	4.53e-35	95.08	uncharacterized protein LOC111474733 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FE40	4.53e-35	95.08	uncharacterized protein LOC111443250 OS=Cucurbita moschata OX=3662 GN=LOC1114432...	[more]

BLAST of MC11g1068 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55850.1	3.5e-20	78.13	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	3.5e-20	78.13	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.3	3.5e-20	78.13	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT2G04410.1	8.6e-19	91.11	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G63270.1	1.6e-12	71.74	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 1..36 e-value: 6.4E-23 score: 79.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..52
None	No IPR available	PANTHER	PTHR33159:SF59	RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE SITE-RELATED	coord: 2..58
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 2..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g1068.1	MC11g1068.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane