MC11g0937 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0937
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	60S ribosomal protein L2
Location	MC11: 7969439 .. 7969627 (-)
RNA-Seq Expression	MC11g0937
Synteny	MC11g0937

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CACACCTCGGTCACCCACATGGTGCTCCACATTACAAACCACAGCACCTTCAGGGATGGCTCTGATGGGGAGCACATTACCGACAACAAGATTGGCCTTCTTCCCGCAGTAGACGAACTGGCCGGTGTACATACCCTCGGCGGCGATGAAGAGCTCCTTCTGGTGCTTGTAGCGGAAGGGGTGGCGGAA

mRNA sequence

CACACCTCGGTCACCCACATGGTGCTCCACATTACAAACCACAGCACCTTCAGGGATGGCTCTGATGGGGAGCACATTACCGACAACAAGATTGGCCTTCTTCCCGCAGTAGACGAACTGGCCGGTGTACATACCCTCGGCGGCGATGAAGAGCTCCTTCTGGTGCTTGTAGCGGAAGGGGTGGCGGAA

Coding sequence (CDS)

CACACCTCGGTCACCCACATGGTGCTCCACATTACAAACCACAGCACCTTCAGGGATGGCTCTGATGGGGAGCACATTACCGACAACAAGATTGGCCTTCTTCCCGCAGTAGACGAACTGGCCGGTGTACATACCCTCGGCGGCGATGAAGAGCTCCTTCTGGTGCTTGTAGCGGAAGGGGTGGCGGAA

Protein sequence

HTSVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEGVAE

Homology

[Close]

BLAST of MC11g0937 vs. NCBI nr
Match: CAN78243.1 (hypothetical protein VITISV_030602 [Vitis vinifera])

HSP 1 Score: 80.9 bits (198), Expect = 4.45e-17
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 1  HTSVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEG 60
          HT+VTHMVL++ ++ T  DGS  ++I +N+IGLL  +DEL GVH LGGDE+L L+LV EG
Sbjct: 6  HTTVTHMVLNVAHNGTLGDGSKRQYIANNEIGLLATIDELVGVHALGGDEQLFLMLVPEG 65

Query: 61 VAE 63
          VAE
Sbjct: 66 VAE 68

[Close]

BLAST of MC11g0937 vs. NCBI nr
Match: XP_034701010.1 (uncharacterized protein LOC117926028 [Vitis riparia])

HSP 1 Score: 76.3 bits (186), Expect = 9.08e-16
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 1  HTSVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEG 60
          HT+VTHMVL++ ++    DGS  ++I +N+IGLL  VDELAGVH LG D++L L+LV EG
Sbjct: 6  HTTVTHMVLNVAHNDILGDGSKRQNIANNEIGLLATVDELAGVHALGSDKQLFLMLVPEG 65

Query: 61 VAE 63
          VAE
Sbjct: 66 VAE 68

[Close]

BLAST of MC11g0937 vs. NCBI nr
Match: GER39561.1 (60S ribosomal protein L2 [Striga asiatica])

HSP 1 Score: 75.9 bits (185), Expect = 2.86e-15
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 3  SVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEGVA 62
          SVTH++LH+ ++ T RD S+ E I D+KIGLL AVDELAG+H LGG E+LLL+L  E VA
Sbjct: 34 SVTHVMLHVADNGTLRDRSEWEDIADHKIGLLAAVDELAGIHALGGHEKLLLMLEPEWVA 93

[Close]

BLAST of MC11g0937 vs. NCBI nr
Match: RVW26796.1 (hypothetical protein CK203_099716 [Vitis vinifera])

HSP 1 Score: 74.7 bits (182), Expect = 1.11e-13
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 3  SVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEGVA 62
          +VTHMVL++ ++ T  DGS  ++I +N+IGLL  VDELAGVH LGGDE+L L+LV E VA
Sbjct: 33 AVTHMVLNVAHNGTLGDGSKRQNIANNEIGLLATVDELAGVHALGGDEQLFLMLVPERVA 92

[Close]

BLAST of MC11g0937 vs. NCBI nr
Match: KAF4382597.1 (hypothetical protein F8388_015425 [Cannabis sativa])

HSP 1 Score: 70.1 bits (170), Expect = 2.05e-13
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 2  TSVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEGV 61
          T+VT +VL + N+ TFR+ S+ ++IT N+IGLL  VDEL  V TLGGDE+LLLVLV E V
Sbjct: 16 TTVTDVVLDVANNGTFRERSERKNITHNEIGLLSTVDELTRVQTLGGDEKLLLVLVPERV 75

Query: 62 AE 63
           E
Sbjct: 76 TE 77

[Close]

BLAST of MC11g0937 vs. ExPASy TrEMBL
Match: A5AS87 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_030602 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.15e-17
Identity = 38/63 (60.32%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 1  HTSVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEG 60
          HT+VTHMVL++ ++ T  DGS  ++I +N+IGLL  +DEL GVH LGGDE+L L+LV EG
Sbjct: 6  HTTVTHMVLNVAHNGTLGDGSKRQYIANNEIGLLATIDELVGVHALGGDEQLFLMLVPEG 65

Query: 61 VAE 63
          VAE
Sbjct: 66 VAE 68

[Close]

BLAST of MC11g0937 vs. ExPASy TrEMBL
Match: A0A5A7Q6A2 (60S ribosomal protein L2 OS=Striga asiatica OX=4170 GN=STAS_16180 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.38e-15
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 3  SVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEGVA 62
          SVTH++LH+ ++ T RD S+ E I D+KIGLL AVDELAG+H LGG E+LLL+L  E VA
Sbjct: 34 SVTHVMLHVADNGTLRDRSEWEDIADHKIGLLAAVDELAGIHALGGHEKLLLMLEPEWVA 93

[Close]

BLAST of MC11g0937 vs. ExPASy TrEMBL
Match: A0A438CUB9 (Chromo domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_099716 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 5.37e-14
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 0


Query: 3  SVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEGVA 62
          +VTHMVL++ ++ T  DGS  ++I +N+IGLL  VDELAGVH LGGDE+L L+LV E VA
Sbjct: 33 AVTHMVLNVAHNGTLGDGSKRQNIANNEIGLLATVDELAGVHALGGDEQLFLMLVPERVA 92

[Close]

BLAST of MC11g0937 vs. ExPASy TrEMBL
Match: A0A7J6HGG0 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_018542 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.93e-14
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 2  TSVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEGV 61
          T+VT +VL + N+ TFR+ S+ ++IT N+IGLL  VDEL  V TLGGDE+LLLVLV E V
Sbjct: 16 TTVTDVVLDVANNGTFRERSERKNITHNEIGLLSTVDELTRVQTLGGDEKLLLVLVPERV 75

Query: 62 AE 63
           E
Sbjct: 76 TE 77

[Close]

BLAST of MC11g0937 vs. ExPASy TrEMBL
Match: A0A7J6GI91 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_015425 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 9.93e-14
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 2  TSVTHMVLHITNHSTFRDGSDGEHITDNKIGLLPAVDELAGVHTLGGDEELLLVLVAEGV 61
          T+VT +VL + N+ TFR+ S+ ++IT N+IGLL  VDEL  V TLGGDE+LLLVLV E V
Sbjct: 16 TTVTDVVLDVANNGTFRERSERKNITHNEIGLLSTVDELTRVQTLGGDEKLLLVLVPERV 75

Query: 62 AE 63
           E
Sbjct: 76 TE 77

The following BLAST results are available for this feature:

BLAST of MC11g0937 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g0937 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN78243.1	4.45e-17	60.32	hypothetical protein VITISV_030602 [Vitis vinifera]	[more]
XP_034701010.1	9.08e-16	58.73	uncharacterized protein LOC117926028 [Vitis riparia]	[more]
GER39561.1	2.86e-15	62.30	60S ribosomal protein L2 [Striga asiatica]	[more]
RVW26796.1	1.11e-13	60.66	hypothetical protein CK203_099716 [Vitis vinifera]	[more]
KAF4382597.1	2.05e-13	59.68	hypothetical protein F8388_015425 [Cannabis sativa]	[more]

BLAST of MC11g0937 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5AS87	2.15e-17	60.32	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_030602 PE=4 SV=1	[more]
A0A5A7Q6A2	1.38e-15	62.30	60S ribosomal protein L2 OS=Striga asiatica OX=4170 GN=STAS_16180 PE=4 SV=1	[more]
A0A438CUB9	5.37e-14	60.66	Chromo domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_099716 PE=4...	[more]
A0A7J6HGG0	9.93e-14	59.68	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_018542 PE=4 SV=1	[more]
A0A7J6GI91	9.93e-14	59.68	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_015425 PE=4 SV=1	[more]

BLAST of MC11g0937 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g0937.1	MC11g0937.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008236	serine-type peptidase activity