MC11g0879 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0879
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	translation initiation factor IF-1, chloroplastic-like
Location	MC11: 7478447 .. 7478896 (+)
RNA-Seq Expression	MC11g0879
Synteny	MC11g0879

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACCACAAATTTCCTCCAATTCCCGCTCCTCCCCGCCGCCCACCTCCGGCCACCATCCTCCTCCTCTTCTCTATCCACTCTTCTCTTCCCCTCTCTCAGATCGCATCCCTCCGTCGTCTCAATCCCTTTTCCAACCTCTACTTTCCTCCACATCCCTTACCATGCTTCGCCAAGGCTCTTTGTCATGGCGAAGTCACCAAAAAGCGACAGCTCCGAGCAGAAATGGAGCCACGAAGGCTCCGTTACCGAGTCTCTTCCCAATGGGATGTTCAGAGTTCGATTGGATAACGAAGACCTCATTCTTGGCTACATATCGGGTAAGATTCGAAAGAATTTTGTGCGTATTTTGCCTGGAGATAGGGTCAGGATTGAAGTTAGTCGTTATGACTCTACTAAGGGCCGTATTGTCTATAGACTCCGGAGCAGTACTAAGGATTCATCTTCA

mRNA sequence

ATGGCGACCACAAATTTCCTCCAATTCCCGCTCCTCCCCGCCGCCCACCTCCGGCCACCATCCTCCTCCTCTTCTCTATCCACTCTTCTCTTCCCCTCTCTCAGATCGCATCCCTCCGTCGTCTCAATCCCTTTTCCAACCTCTACTTTCCTCCACATCCCTTACCATGCTTCGCCAAGGCTCTTTGTCATGGCGAAGTCACCAAAAAGCGACAGCTCCGAGCAGAAATGGAGCCACGAAGGCTCCGTTACCGAGTCTCTTCCCAATGGGATGTTCAGAGTTCGATTGGATAACGAAGACCTCATTCTTGGCTACATATCGGGTAAGATTCGAAAGAATTTTGTGCGTATTTTGCCTGGAGATAGGGTCAGGATTGAAGTTAGTCGTTATGACTCTACTAAGGGCCGTATTGTCTATAGACTCCGGAGCAGTACTAAGGATTCATCTTCA

Coding sequence (CDS)

ATGGCGACCACAAATTTCCTCCAATTCCCGCTCCTCCCCGCCGCCCACCTCCGGCCACCATCCTCCTCCTCTTCTCTATCCACTCTTCTCTTCCCCTCTCTCAGATCGCATCCCTCCGTCGTCTCAATCCCTTTTCCAACCTCTACTTTCCTCCACATCCCTTACCATGCTTCGCCAAGGCTCTTTGTCATGGCGAAGTCACCAAAAAGCGACAGCTCCGAGCAGAAATGGAGCCACGAAGGCTCCGTTACCGAGTCTCTTCCCAATGGGATGTTCAGAGTTCGATTGGATAACGAAGACCTCATTCTTGGCTACATATCGGGTAAGATTCGAAAGAATTTTGTGCGTATTTTGCCTGGAGATAGGGTCAGGATTGAAGTTAGTCGTTATGACTCTACTAAGGGCCGTATTGTCTATAGACTCCGGAGCAGTACTAAGGATTCATCTTCA

Protein sequence

MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPRLFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDSTKGRIVYRLRSSTKDSSS

Homology

[Close]

BLAST of MC11g0879 vs. ExPASy Swiss-Prot
Match: Q94KR7 (Translation initiation factor IF-1, chloroplastic OS=Glycine max OX=3847 GN=infA PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.1e-31
Identity = 80/134 (59.70%), Postives = 95/134 (70.90%), Query Frame = 0


Query: 24  SSLST-LLFPSLRSHP-------SVVSIP--FPTSTFLHIP--YHASPRLFVMAKSPKSD 83
           +SL T +L P    HP       S +++P    T +FL  P    A+P L   + +    
Sbjct: 3   TSLHTPILHPRYCHHPTPSCTQFSPLALPPFHRTLSFLAPPPLLPAAPALSAASAAKPDK 62

Query: 84  SSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYD 143
           S EQKW HEG + ESLPNGMFRVRLDNEDLILGYISGKIRKN+VRILPGDRV++EV+RYD
Sbjct: 63  SGEQKWVHEGLIMESLPNGMFRVRLDNEDLILGYISGKIRKNYVRILPGDRVKVEVTRYD 122

Query: 144 STKGRIVYRLRSST 146
           S+KGRIVYRLRSST
Sbjct: 123 SSKGRIVYRLRSST 136

[Close]

BLAST of MC11g0879 vs. ExPASy Swiss-Prot
Match: Q09G11 (Translation initiation factor IF-1, chloroplastic OS=Platanus occidentalis OX=4403 GN=infA PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.0e-30
Identity = 63/76 (82.89%), Postives = 72/76 (94.74%), Query Frame = 0


Query: 74  EQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDST 133
           EQKW HEG +TESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV+IEVSRYDST
Sbjct: 3   EQKWIHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRRSFIRILPGDRVKIEVSRYDST 62

Query: 134 KGRIVYRLRSSTKDSS 150
           +GRI+YRLRS  KDS+
Sbjct: 63  RGRIIYRLRS--KDSN 76

[Close]

BLAST of MC11g0879 vs. ExPASy Swiss-Prot
Match: Q94KR9 (Translation initiation factor IF-1, chloroplastic OS=Solanum lycopersicum OX=4081 GN=infA PE=2 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.0e-30
Identity = 59/71 (83.10%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 72  SSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYD 131
           S EQKW+HEGS+TESLPNGMFRV+LDN D++LGYISGKIRKNF+R+LPGDRV+IEVSRYD
Sbjct: 81  SQEQKWTHEGSITESLPNGMFRVKLDNADVVLGYISGKIRKNFIRLLPGDRVKIEVSRYD 140

Query: 132 STKGRIVYRLR 143
           S+KGRI+YRLR
Sbjct: 141 SSKGRIIYRLR 151

[Close]

BLAST of MC11g0879 vs. ExPASy Swiss-Prot
Match: A0A370 (Translation initiation factor IF-1, chloroplastic OS=Coffea arabica OX=13443 GN=infA PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 5.2e-30
Identity = 62/75 (82.67%), Postives = 72/75 (96.00%), Query Frame = 0


Query: 74  EQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDST 133
           EQKW+HEG +TESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV+IEVSRYDST
Sbjct: 3   EQKWTHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRRSFIRILPGDRVKIEVSRYDST 62

Query: 134 KGRIVYRLRSSTKDS 149
           +GRI+YRLR+  KDS
Sbjct: 63  RGRIIYRLRN--KDS 75

[Close]

BLAST of MC11g0879 vs. ExPASy Swiss-Prot
Match: Q7ICQ5 (Translation initiation factor IF-1, chloroplastic OS=Fouquieria splendens OX=13533 GN=infA PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-29
Identity = 62/75 (82.67%), Postives = 71/75 (94.67%), Query Frame = 0


Query: 74  EQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEVSRYDST 133
           EQKW HEG +TESLPNGMFRVRLDNEDLILGY+SGKIR++F+RILPGDRV+IEVSRYDST
Sbjct: 3   EQKWIHEGLITESLPNGMFRVRLDNEDLILGYVSGKIRRSFIRILPGDRVKIEVSRYDST 62

Query: 134 KGRIVYRLRSSTKDS 149
           +GRI+YRLR+  KDS
Sbjct: 63  RGRIIYRLRN--KDS 75

[Close]

BLAST of MC11g0879 vs. NCBI nr
Match: XP_022139601.1 (uncharacterized protein LOC111010461 [Momordica charantia])

HSP 1 Score: 293 bits (751), Expect = 5.05e-100
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPR 60
           MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPR
Sbjct: 1   MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPR 60

Query: 61  LFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG 120
           LFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG
Sbjct: 61  LFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG 120

Query: 121 DRVRIEVSRYDSTKGRIVYRLRSSTKDSSS 150
           DRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
Sbjct: 121 DRVRIEVSRYDSTKGRIVYRLRSSTKDSSS 150

[Close]

BLAST of MC11g0879 vs. NCBI nr
Match: XP_038899010.1 (translation initiation factor IF-1, chloroplastic [Benincasa hispida])

HSP 1 Score: 220 bits (561), Expect = 3.68e-71
Identity = 117/150 (78.00%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 1   MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPR 60
           M++T  LQFPLL  +H RPPS      TL FP+++SH SVVSI FPT+ FLH P HAS  
Sbjct: 1   MSSTILLQFPLL-QSHFRPPS------TLFFPAVKSHLSVVSITFPTTQFLHNPSHASAG 60

Query: 61  LFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG 120
             +MAKSPK+D+SEQKWSHEGSV ESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG
Sbjct: 61  FVLMAKSPKNDTSEQKWSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG 120

Query: 121 DRVRIEVSRYDSTKGRIVYRLRSSTKDSSS 150
           DRVR+EVSRYDSTKGRIVYRLRSSTKDSSS
Sbjct: 121 DRVRVEVSRYDSTKGRIVYRLRSSTKDSSS 143

[Close]

BLAST of MC11g0879 vs. NCBI nr
Match: KAA0064332.1 (translation initiation factor IF-1 [Cucumis melo var. makuwa] >TYK20254.1 translation initiation factor IF-1 [Cucumis melo var. makuwa])

HSP 1 Score: 219 bits (559), Expect = 7.42e-71
Identity = 118/150 (78.67%), Postives = 127/150 (84.67%), Query Frame = 0


Query: 1   MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPR 60
           M++TN LQFPLL  +H RPPS      TLLFP ++SH SVVSI FPTS FLH P HA P 
Sbjct: 1   MSSTNLLQFPLL-QSHFRPPS------TLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPG 60

Query: 61  LFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG 120
             +MAKSPK+D+SEQK SHEGSV ESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG
Sbjct: 61  FALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG 120

Query: 121 DRVRIEVSRYDSTKGRIVYRLRSSTKDSSS 150
           DRVR+EVSRYDSTKGRIVYRLRSS KDSSS
Sbjct: 121 DRVRVEVSRYDSTKGRIVYRLRSSGKDSSS 143

[Close]

BLAST of MC11g0879 vs. NCBI nr
Match: XP_011654076.1 (uncharacterized protein LOC101206284 [Cucumis sativus] >KGN55131.1 hypothetical protein Csa_012104 [Cucumis sativus])

HSP 1 Score: 215 bits (548), Expect = 3.40e-69
Identity = 115/150 (76.67%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 1   MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPR 60
           M++TN LQFPLL  +H RPPS      TLLFP+++SH S+ SI FPTS FLH P HASP 
Sbjct: 1   MSSTNLLQFPLL-QSHFRPPS------TLLFPAVKSHLSLASISFPTSQFLHTPSHASPA 60

Query: 61  LFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG 120
             +MAKSPK+D+SEQK SHEGSV ESLPNGMFRVRLDN+DLILGYISGKIRKNFVRILPG
Sbjct: 61  FVLMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPG 120

Query: 121 DRVRIEVSRYDSTKGRIVYRLRSSTKDSSS 150
           DRVR+EVSRYDSTKGRIVYR+RS TKDSSS
Sbjct: 121 DRVRVEVSRYDSTKGRIVYRMRS-TKDSSS 142

[Close]

BLAST of MC11g0879 vs. NCBI nr
Match: KAG6607876.1 (Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204 bits (520), Expect = 6.26e-65
Identity = 113/150 (75.33%), Postives = 123/150 (82.00%), Query Frame = 0


Query: 1   MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPR 60
           M++TN LQFPLL     RPPS      T LFP+++SH SVVSIPFP+S FLH P H S  
Sbjct: 1   MSSTNLLQFPLL-QFQCRPPS------TFLFPAIKSHLSVVSIPFPSSQFLHNPSHGSAS 60

Query: 61  LFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG 120
              MAKSPKS+SSEQK+SHEGSV ESLPNGMFRV+LDNEDLILGYISGKIRKNFVRILPG
Sbjct: 61  FVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPG 120

Query: 121 DRVRIEVSRYDSTKGRIVYRLRSSTKDSSS 150
           DRVR+EVSRYDSTKGRIVYR RS TKD SS
Sbjct: 121 DRVRVEVSRYDSTKGRIVYRHRS-TKDPSS 142

[Close]

BLAST of MC11g0879 vs. ExPASy TrEMBL
Match: A0A6J1CD60 (uncharacterized protein LOC111010461 OS=Momordica charantia OX=3673 GN=LOC111010461 PE=3 SV=1)

HSP 1 Score: 293 bits (751), Expect = 2.45e-100
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPR 60
           MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPR
Sbjct: 1   MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPR 60

Query: 61  LFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG 120
           LFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG
Sbjct: 61  LFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG 120

Query: 121 DRVRIEVSRYDSTKGRIVYRLRSSTKDSSS 150
           DRVRIEVSRYDSTKGRIVYRLRSSTKDSSS
Sbjct: 121 DRVRIEVSRYDSTKGRIVYRLRSSTKDSSS 150

[Close]

BLAST of MC11g0879 vs. ExPASy TrEMBL
Match: A0A5A7V7J3 (Translation initiation factor IF-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G003940 PE=3 SV=1)

HSP 1 Score: 219 bits (559), Expect = 3.59e-71
Identity = 118/150 (78.67%), Postives = 127/150 (84.67%), Query Frame = 0


Query: 1   MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPR 60
           M++TN LQFPLL  +H RPPS      TLLFP ++SH SVVSI FPTS FLH P HA P 
Sbjct: 1   MSSTNLLQFPLL-QSHFRPPS------TLLFPPVKSHLSVVSISFPTSQFLHTPSHAPPG 60

Query: 61  LFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG 120
             +MAKSPK+D+SEQK SHEGSV ESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG
Sbjct: 61  FALMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG 120

Query: 121 DRVRIEVSRYDSTKGRIVYRLRSSTKDSSS 150
           DRVR+EVSRYDSTKGRIVYRLRSS KDSSS
Sbjct: 121 DRVRVEVSRYDSTKGRIVYRLRSSGKDSSS 143

[Close]

BLAST of MC11g0879 vs. ExPASy TrEMBL
Match: A0A0A0L4Q7 (S1-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637710 PE=3 SV=1)

HSP 1 Score: 215 bits (548), Expect = 1.65e-69
Identity = 115/150 (76.67%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 1   MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPR 60
           M++TN LQFPLL  +H RPPS      TLLFP+++SH S+ SI FPTS FLH P HASP 
Sbjct: 1   MSSTNLLQFPLL-QSHFRPPS------TLLFPAVKSHLSLASISFPTSQFLHTPSHASPA 60

Query: 61  LFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG 120
             +MAKSPK+D+SEQK SHEGSV ESLPNGMFRVRLDN+DLILGYISGKIRKNFVRILPG
Sbjct: 61  FVLMAKSPKNDTSEQKLSHEGSVVESLPNGMFRVRLDNQDLILGYISGKIRKNFVRILPG 120

Query: 121 DRVRIEVSRYDSTKGRIVYRLRSSTKDSSS 150
           DRVR+EVSRYDSTKGRIVYR+RS TKDSSS
Sbjct: 121 DRVRVEVSRYDSTKGRIVYRMRS-TKDSSS 142

[Close]

BLAST of MC11g0879 vs. ExPASy TrEMBL
Match: A0A6J1FLU6 (translation initiation factor IF-1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446393 PE=3 SV=1)

HSP 1 Score: 202 bits (515), Expect = 1.75e-64
Identity = 112/150 (74.67%), Postives = 122/150 (81.33%), Query Frame = 0


Query: 1   MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPR 60
           M++TN LQFPLL     RPPS      T LFP+++SH SVVSIPFP+S FLH P H    
Sbjct: 1   MSSTNLLQFPLL-QFQCRPPS------TFLFPAIKSHVSVVSIPFPSSQFLHNPSHGPVS 60

Query: 61  LFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG 120
              MAKSPKS+SSEQK+SHEGSV ESLPNGMFRV+LDNEDLILGYISGKIRKNFVRILPG
Sbjct: 61  FVPMAKSPKSESSEQKFSHEGSVIESLPNGMFRVQLDNEDLILGYISGKIRKNFVRILPG 120

Query: 121 DRVRIEVSRYDSTKGRIVYRLRSSTKDSSS 150
           DRVR+EVSRYDSTKGRIVYR RS TKD SS
Sbjct: 121 DRVRVEVSRYDSTKGRIVYRHRS-TKDPSS 142

[Close]

BLAST of MC11g0879 vs. ExPASy TrEMBL
Match: A0A6J1IP00 (uncharacterized protein LOC111476947 OS=Cucurbita maxima OX=3661 GN=LOC111476947 PE=3 SV=1)

HSP 1 Score: 202 bits (513), Expect = 3.10e-64
Identity = 107/145 (73.79%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MATTNFLQFPLLPAAHLRPPSSSSSLSTLLFPSLRSHPSVVSIPFPTSTFLHIPYHASPR 60
           M++TN L+FPLL   H RPPS      TL FP+++SH SVVSI FPTS FL  P H   R
Sbjct: 1   MSSTNLLRFPLL-HLHSRPPS------TLFFPAIKSHLSVVSIAFPTSQFLRNPSHGPAR 60

Query: 61  LFVMAKSPKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPG 120
             +MAK PKSDS+EQKWS+EGS+ ESLPNGMFRVRLDNEDLILGYI GKIRKNFVRILPG
Sbjct: 61  FALMAKPPKSDSTEQKWSYEGSIVESLPNGMFRVRLDNEDLILGYICGKIRKNFVRILPG 120

Query: 121 DRVRIEVSRYDSTKGRIVYRLRSST 145
           DRVR+EVSRYDSTKGRIVYR RSST
Sbjct: 121 DRVRVEVSRYDSTKGRIVYRNRSST 138

[Close]

BLAST of MC11g0879 vs. TAIR 10
Match: AT4G11175.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-22
Identity = 50/76 (65.79%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 68  PKSDSSEQKWSHEGSVTESLPNGMFRVRLDNEDLILGYISGKIRKNFVRILPGDRVRIEV 127
           P+      K   EG VTESLPNGMFRV L+N D ILGYI GKIRKNF+RILPGD+V++E+
Sbjct: 64  PQVKEGSNKTVIEGLVTESLPNGMFRVDLENGDNILGYICGKIRKNFIRILPGDKVKVEM 123

Query: 128 SRYDSTKGRIVYRLRS 144
           S YDSTKGRI++R+ S
Sbjct: 124 SVYDSTKGRIIFRMSS 139

The following BLAST results are available for this feature:

BLAST of MC11g0879 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94KR7	2.1e-31	59.70	Translation initiation factor IF-1, chloroplastic OS=Glycine max OX=3847 GN=infA...	[more]
Q09G11	4.0e-30	82.89	Translation initiation factor IF-1, chloroplastic OS=Platanus occidentalis OX=44...	[more]
Q94KR9	4.0e-30	83.10	Translation initiation factor IF-1, chloroplastic OS=Solanum lycopersicum OX=408...	[more]
A0A370	5.2e-30	82.67	Translation initiation factor IF-1, chloroplastic OS=Coffea arabica OX=13443 GN=...	[more]
Q7ICQ5	1.2e-29	82.67	Translation initiation factor IF-1, chloroplastic OS=Fouquieria splendens OX=135...	[more]

BLAST of MC11g0879 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139601.1	5.05e-100	100.00	uncharacterized protein LOC111010461 [Momordica charantia]	[more]
XP_038899010.1	3.68e-71	78.00	translation initiation factor IF-1, chloroplastic [Benincasa hispida]	[more]
KAA0064332.1	7.42e-71	78.67	translation initiation factor IF-1 [Cucumis melo var. makuwa] >TYK20254.1 transl...	[more]
XP_011654076.1	3.40e-69	76.67	uncharacterized protein LOC101206284 [Cucumis sativus] >KGN55131.1 hypothetical ...	[more]
KAG6607876.1	6.26e-65	75.33	Translation initiation factor IF-1, chloroplastic, partial [Cucurbita argyrosper...	[more]

BLAST of MC11g0879 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CD60	2.45e-100	100.00	uncharacterized protein LOC111010461 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A5A7V7J3	3.59e-71	78.67	Translation initiation factor IF-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0L4Q7	1.65e-69	76.67	S1-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G637710 PE=...	[more]
A0A6J1FLU6	1.75e-64	74.67	translation initiation factor IF-1, chloroplastic-like OS=Cucurbita moschata OX=...	[more]
A0A6J1IP00	3.10e-64	73.79	uncharacterized protein LOC111476947 OS=Cucurbita maxima OX=3661 GN=LOC111476947...	[more]

BLAST of MC11g0879 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G11175.1	1.8e-22	65.79	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 68..149 e-value: 3.0E-32 score: 112.1
None	No IPR available	PANTHER	PTHR33370:SF1	TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC	coord: 52..146
IPR004368	Translation initiation factor IF-1	TIGRFAM	TIGR00008	TIGR00008	coord: 74..141 e-value: 1.3E-34 score: 116.0
IPR004368	Translation initiation factor IF-1	PANTHER	PTHR33370	TRANSLATION INITIATION FACTOR IF-1, CHLOROPLASTIC	coord: 52..146
IPR004368	Translation initiation factor IF-1	HAMAP	MF_00075	IF_1	coord: 64..142 score: 22.879879
IPR004368	Translation initiation factor IF-1	CDD	cd04451	S1_IF1	coord: 80..140 e-value: 2.40289E-32 score: 107.607
IPR006196	RNA-binding domain, S1, IF1 type	PFAM	PF01176	eIF-1a	coord: 80..140 e-value: 2.4E-21 score: 75.3
IPR006196	RNA-binding domain, S1, IF1 type	PROSITE	PS50832	S1_IF1_TYPE	coord: 80..142 score: 19.880276
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 74..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g0879.1	MC11g0879.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006413	translational initiation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding