MC11g0734 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0734
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribosomal protein S12, mitochondrial
Location	MC11: 5913604 .. 5913708 (+)
RNA-Seq Expression	MC11g0734
Synteny	MC11g0734

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTAAGATAGTTAAAGTACGGTTGAACAATCGACATTATCATAATTTGCAGGAGCATTATGTGGTGTTAATAGGAGGAGGTAGAGTGAAAGATTCGCGAGCTGTA

mRNA sequence

CGTAAGATAGTTAAAGTACGGTTGAACAATCGACATTATCATAATTTGCAGGAGCATTATGTGGTGTTAATAGGAGGAGGTAGAGTGAAAGATTCGCGAGCTGTA

Coding sequence (CDS)

CGTAAGATAGTTAAAGTACGGTTGAACAATCGACATTATCATAATTTGCAGGAGCATTATGTGGTGTTAATAGGAGGAGGTAGAGTGAAAGATTCGCGAGCTGTA

Protein sequence

RKIVKVRLNNRHYHNLQEHYVVLIGGGRVKDSRAV

Homology

[Close]

BLAST of MC11g0734 vs. ExPASy Swiss-Prot
Match: P68535 (Ribosomal protein S12, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.0e-05
Identity = 27/44 (61.36%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 1  RKIVKVRLNNRH---------YHNLQEHYVVLIGGGRVKDSRAV 36
          RKI KVRL+NRH          HNLQEH +VLI GGRVKDS  V
Sbjct: 50 RKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGV 93

[Close]

BLAST of MC11g0734 vs. ExPASy Swiss-Prot
Match: P68536 (Ribosomal protein S12, mitochondrial OS=Petunia parodii OX=55890 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 3.0e-05
Identity = 27/44 (61.36%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 1  RKIVKVRLNNRH---------YHNLQEHYVVLIGGGRVKDSRAV 36
          RKI KVRL+NRH          HNLQEH +VLI GGRVKDS  V
Sbjct: 50 RKIAKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGV 93

[Close]

BLAST of MC11g0734 vs. ExPASy Swiss-Prot
Match: Q96033 (Ribosomal protein S12, mitochondrial OS=Helianthus annuus OX=4232 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 1.1e-04
Identity = 25/40 (62.50%), Postives = 27/40 (67.50%), Query Frame = 0


Query: 1  RKIVKVRLNNRH---------YHNLQEHYVVLIGGGRVKD 32
          RKI KVRL+NRH          HNLQEH +VLI GGRVKD
Sbjct: 50 RKIAKVRLSNRHDIFAYIPGEGHNLQEHSIVLIRGGRVKD 89

[Close]

BLAST of MC11g0734 vs. ExPASy Swiss-Prot
Match: P28520 (Ribosomal protein S12, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=RPS12 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 1.1e-04
Identity = 25/44 (56.82%), Postives = 28/44 (63.64%), Query Frame = 0


Query: 1  RKIVKVRLNNRH---------YHNLQEHYVVLIGGGRVKDSRAV 36
          RKI KVRL+NRH          HN QEH +VL+ GGRVKDS  V
Sbjct: 50 RKIAKVRLSNRHDIFAHIPGEGHNSQEHSIVLVRGGRVKDSPGV 93

[Close]

BLAST of MC11g0734 vs. ExPASy Swiss-Prot
Match: P60099 (Ribosomal protein S12, mitochondrial OS=Zea mays OX=4577 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 1.5e-04
Identity = 24/40 (60.00%), Postives = 27/40 (67.50%), Query Frame = 0


Query: 1  RKIVKVRLNNRH---------YHNLQEHYVVLIGGGRVKD 32
          RKI KVRL+NRH          HNLQEH +VL+ GGRVKD
Sbjct: 50 RKIAKVRLSNRHDIFAYIPGEGHNLQEHSIVLVRGGRVKD 89

[Close]

BLAST of MC11g0734 vs. NCBI nr
Match: YP_009239006.1 (ribosomal protein S12 [Salix purpurea] >YP_009745346.1 ribosomal protein S12 [Salix paraflabellaris] >YP_009988231.1 ribosomal protein S12 [Salix cardiophylla] >AMO27190.1 ribosomal protein S12 [Salix purpurea] >QIH29792.1 ribosomal protein S12 [Salix paraflabellaris] >QNM38477.1 ribosomal protein S12 [Salix cardiophylla])

HSP 1 Score: 48.9 bits (115), Expect = 1.06e-05
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 1  RKIVKVRLNNRHY---------HNLQEHYVVLIGGGRVKDSRAV 35
          RKIVKVRL+NRH          HNLQEH +VLI GGRVKDS  V
Sbjct: 50 RKIVKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGV 93

[Close]

BLAST of MC11g0734 vs. NCBI nr
Match: YP_009173845.1 (ribosomal protein S12 [Populus tremula] >YP_009178742.1 ribosomal protein S12 [Populus tremula x Populus alba] >YP_009389190.1 ribosomal protein S12 [Populus davidiana] >YP_009560693.1 ribosomal protein S12 [Populus alba] >QTG40185.1 ribosomal protein S12 [Populus rotundifolia var. duclouxiana] >ALH07317.1 ribosomal protein S12 [Populus tremula] >ALJ49773.1 ribosomal protein S12 [Populus tremula x Populus alba] >ARX79197.1 ribosomal protein S12 [Populus davidiana] >QAA78992.1 ribosomal protein S12 [Populus alba])

HSP 1 Score: 48.9 bits (115), Expect = 1.06e-05
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 1  RKIVKVRLNNRHY---------HNLQEHYVVLIGGGRVKDSRAV 35
          RKIVKVRL+NRH          HNLQEH +VLI GGRVKDS  V
Sbjct: 50 RKIVKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGV 93

[Close]

BLAST of MC11g0734 vs. NCBI nr
Match: YP_009230378.1 (ribosomal protein S12 [Salix suchowensis] >AMF83899.1 ribosomal protein S12 [Salix suchowensis])

HSP 1 Score: 48.9 bits (115), Expect = 1.14e-05
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 1  RKIVKVRLNNRHY---------HNLQEHYVVLIGGGRVKDSRAV 35
          RKIVKVRL+NRH          HNLQEH +VLI GGRVKDS  V
Sbjct: 54 RKIVKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGV 97

[Close]

BLAST of MC11g0734 vs. NCBI nr
Match: KAG6736890.1 (hypothetical protein POTOM_060180 [Populus tomentosa])

HSP 1 Score: 48.9 bits (115), Expect = 1.77e-05
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 1  RKIVKVRLNNRHY---------HNLQEHYVVLIGGGRVKDSRAV 35
          RKIVKVRL+NRH          HNLQEH +VLI GGRVKDS  V
Sbjct: 50 RKIVKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGV 93

[Close]

BLAST of MC11g0734 vs. NCBI nr
Match: QKI32043.1 (ribosomal protein S12 [Ombrophytum subterraneum])

HSP 1 Score: 48.1 bits (113), Expect = 2.11e-05
Identity = 27/44 (61.36%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 1  RKIVKVRLNNRHY---------HNLQEHYVVLIGGGRVKDSRAV 35
          RKI KVRL+NRH          HNLQEH +VLI GGRVKDS  V
Sbjct: 50 RKIAKVRLSNRHDIFAHIPGEGHNLQEHSIVLIRGGRVKDSPGV 93

[Close]

BLAST of MC11g0734 vs. ExPASy TrEMBL
Match: A0A7G3UZ89 (Ribosomal protein S12 (Fragment) OS=Thismia panamensis OX=396677 GN=rps12 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.61e-06
Identity = 26/44 (59.09%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 1  RKIVKVRLNNRHY---------HNLQEHYVVLIGGGRVKDSRAV 35
          RKI KVRL+NRHY         HN QEH +VL+ GGRVKDS  V
Sbjct: 50 RKIAKVRLSNRHYIFAHIPGEGHNSQEHPIVLVRGGRVKDSPGV 93

[Close]

BLAST of MC11g0734 vs. ExPASy TrEMBL
Match: A0A7G9ISY3 (Ribosomal protein S12 OS=Salix cardiophylla OX=688335 GN=rps12 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.14e-06
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 1  RKIVKVRLNNRHY---------HNLQEHYVVLIGGGRVKDSRAV 35
          RKIVKVRL+NRH          HNLQEH +VLI GGRVKDS  V
Sbjct: 50 RKIVKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGV 93

[Close]

BLAST of MC11g0734 vs. ExPASy TrEMBL
Match: A0A343DRA4 (Ribosomal protein S12 OS=Populus davidiana OX=266767 GN=rps12 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.14e-06
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 1  RKIVKVRLNNRHY---------HNLQEHYVVLIGGGRVKDSRAV 35
          RKIVKVRL+NRH          HNLQEH +VLI GGRVKDS  V
Sbjct: 50 RKIVKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGV 93

[Close]

BLAST of MC11g0734 vs. ExPASy TrEMBL
Match: A0A451FPL0 (Ribosomal protein S12 OS=Populus alba OX=43335 GN=rps12 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.14e-06
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 1  RKIVKVRLNNRHY---------HNLQEHYVVLIGGGRVKDSRAV 35
          RKIVKVRL+NRH          HNLQEH +VLI GGRVKDS  V
Sbjct: 50 RKIVKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGV 93

[Close]

BLAST of MC11g0734 vs. ExPASy TrEMBL
Match: A0A140HP93 (Ribosomal protein S12 OS=Salix purpurea OX=77065 GN=rps12 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 5.14e-06
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 1  RKIVKVRLNNRHY---------HNLQEHYVVLIGGGRVKDSRAV 35
          RKIVKVRL+NRH          HNLQEH +VLI GGRVKDS  V
Sbjct: 50 RKIVKVRLSNRHDIFAHIPGEGHNLQEHSMVLIRGGRVKDSPGV 93

[Close]

BLAST of MC11g0734 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 45.1 bits (105), Expect = 1.4e-05
Identity = 26/44 (59.09%), Postives = 27/44 (61.36%), Query Frame = 0


Query: 1  RKIVKVRLNNRH---------YHNLQEHYVVLIGGGRVKDSRAV 36
          RKI KVRL+NRH          HN QEH  VLI GGRVKDS  V
Sbjct: 50 RKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGV 93

[Close]

BLAST of MC11g0734 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 45.1 bits (105), Expect = 1.4e-05
Identity = 26/44 (59.09%), Postives = 27/44 (61.36%), Query Frame = 0


Query: 1  RKIVKVRLNNRH---------YHNLQEHYVVLIGGGRVKDSRAV 36
          RKI KVRL+NRH          HN QEH  VLI GGRVKDS  V
Sbjct: 50 RKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGV 93

The following BLAST results are available for this feature:

BLAST of MC11g0734 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P68535	3.0e-05	61.36	Ribosomal protein S12, mitochondrial OS=Petunia hybrida OX=4102 GN=RPS12 PE=3 SV...	[more]
P68536	3.0e-05	61.36	Ribosomal protein S12, mitochondrial OS=Petunia parodii OX=55890 GN=RPS12 PE=3 S...	[more]
Q96033	1.1e-04	62.50	Ribosomal protein S12, mitochondrial OS=Helianthus annuus OX=4232 GN=RPS12 PE=2 ...	[more]
P28520	1.1e-04	56.82	Ribosomal protein S12, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
P60099	1.5e-04	60.00	Ribosomal protein S12, mitochondrial OS=Zea mays OX=4577 GN=RPS12 PE=2 SV=1	[more]

BLAST of MC11g0734 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009239006.1	1.06e-05	63.64	ribosomal protein S12 [Salix purpurea] >YP_009745346.1 ribosomal protein S12 [Sa...	[more]
YP_009173845.1	1.06e-05	63.64	ribosomal protein S12 [Populus tremula] >YP_009178742.1 ribosomal protein S12 [P...	[more]
YP_009230378.1	1.14e-05	63.64	ribosomal protein S12 [Salix suchowensis] >AMF83899.1 ribosomal protein S12 [Sal...	[more]
KAG6736890.1	1.77e-05	63.64	hypothetical protein POTOM_060180 [Populus tomentosa]	[more]
QKI32043.1	2.11e-05	61.36	ribosomal protein S12 [Ombrophytum subterraneum]	[more]

BLAST of MC11g0734 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7G3UZ89	4.61e-06	59.09	Ribosomal protein S12 (Fragment) OS=Thismia panamensis OX=396677 GN=rps12 PE=3 S...	[more]
A0A7G9ISY3	5.14e-06	63.64	Ribosomal protein S12 OS=Salix cardiophylla OX=688335 GN=rps12 PE=3 SV=1	[more]
A0A343DRA4	5.14e-06	63.64	Ribosomal protein S12 OS=Populus davidiana OX=266767 GN=rps12 PE=3 SV=1	[more]
A0A451FPL0	5.14e-06	63.64	Ribosomal protein S12 OS=Populus alba OX=43335 GN=rps12 PE=3 SV=1	[more]
A0A140HP93	5.14e-06	63.64	Ribosomal protein S12 OS=Salix purpurea OX=77065 GN=rps12 PE=3 SV=1	[more]

BLAST of MC11g0734 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07675.1	1.4e-05	59.09	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	1.4e-05	59.09	Ribosomal protein S12/S23 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 1..35 e-value: 4.0E-5 score: 25.1
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 1..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g0734.1	MC11g0734.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0043229	intracellular organelle
cellular_component	GO:0016020	membrane