MC11g0580 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0580
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	31 kDa ribonucleoprotein, chloroplastic
Location	MC11: 4520958 .. 4529159 (-)
RNA-Seq Expression	MC11g0580
Synteny	MC11g0580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

AATACATAGACCAGTAAGAAAAAAAAAAGAAAGAAATAATGACTTTGAAAACAGGACATGGATCAATTTTTTACAAAGGGCCACAGTAGACTGATTGAAAGAGATGTAGTGGTAGTTCATTTGTTTTGGATACAAAATATTATGGGTTACAATTCCGTCATTCCCACCTATTACTTCTTCTCATTCCCACCTATTACTTCTTCTCAGGGCAATGATGGATACTTTACTTCTTTTCAGGGCAATAATGATACTTCTTCTCAGGGCAATGATAGATACTTTACTCTTTTCAGGGCAATAATGAAGTATCCATTGATATCGTCAATTGAGGTTGTCTAAGAATGGAGAGCGCTAGAGATTGACTATTGATTTTTCTCGAAAGATGGTCGAGCAAAGAAATTAAATCATCTTCCACAGCGAATGTAACGATGATAATAATATTATTTGGCTGATAAATAATAAACTGACTCTTAGACAAAAACTTAAATATAAAAAACAAAAATCAACAAAAGTTAAAATAACAAAAGAATATCTAAATTCTAAAGAATATATGTGTTGCGGCACTCTCAAATTCGTTAAAAATATCTGAGAAATCCAATCTGAAACGTCGACGTTTTAATCCTTTTCCGAACTCCCTTATCCAATCCATGGCGTTGCTCTGTATCGCTTCCCAAATTAGAAGAGAGTGAACAGAGTACAGTGAACGCCGGCCATGGCTCTGCTTCGTCTTCCTTGTTCTTCATCTTCCTCCTTCATCCGCTCCAAGCAACGCCACCCAATCTTTCTCGCATCTCTCTCATGCCCGCAAAATCCATCTCATTCTATCCATGGCGACATCCATCTCTCTCTTTCTACTTCTCTCACTCACCACCCTTCCATTTCCATTAGGGCTAAAAGAACCAGCAAGTCGATTTTCCAGTTTGTCTCGGCCTCCCATGACGAAACAGTAGCGAGAGTTCCTTCTGAAAGCGAAGGTCCGAAGATTGGTGCTGATGAATTTTCTCGAACCAGATTGCTTGCGCAGAACGTGCCTTGGAATTCTACTCCTGAGGACATTCGGTCTCTGTTTGAGAAATATGGAACTGTCCTCGACGTGGAGGTATGCCATGCCCTTGCCCGCCGCTCTTGTTTTTCTCTGTGAAAGAGAATTCCTCTTTCCATTTTTGTTTGATGGATTTGGTTTATTTCTTTCAGCTTTCGATGTATAACAAGATCAGAAACAGGGGCTTGGCGTTTGTCACAATGGGATCACCTGAGGAGGCTCTTACGGCGCTCAATAATCTCGAATCGTATGTAAGCAGGCTGTTGTTGTTCTTAATTGGAATGTTTTTCGTTTAGCTTATTTGTTCAGTTTCGTTATTGAGGTTTAATGCAACGTTTACTTTCCATCATGGAAGAATTAACGTATTAGCAGTTCATTGCGTTTAACTTAAGTACTAATTTGGTTTGTGTGTTTGGGGATTGAAAAACCACAACTGATGAAGCAGAAAAAGACCAAGTTTAAATTTGTATCCTGCCCGTGTCCAGCGTGTTGCATTTGCTTAACTTCTGCTTTTGAAAATGTTATTACAAAGGAATCAGTTGTTGATTCTGAATTTTGAACTCTTGTTAGCTTTATTTAATGTACTTGTTCACGTTAATGCAGGAATATGAGGGTCGTACTCTGAGGCTCAATTATGCAAAGATTAAAAAAGAAAAACCTTACCCCCCTCCTGTGAAACCAAAACCAGTTACTTTTAATTTGTTTGTGGCAAATTTGCCATATGACGCAAGAGCAAAGGACCTCAAGGAGTTCTTTGATTCGGGGAGTGGTAATGTAGTTTCTGCACAAGTTATTTTTAATGAGAATCCGAGAAGGTCTTCTGGATATGGTTTTGTGGCCTTCAAAACAAAGAAGGATGCTGAAGCAGCCATTTCTGATTTCCAAGGGAAGGTAATTTCAGTATTGCTACTACCTCATATTGATATTGTTAAAACGAATTACCATAGAATCATCAAGTGAGAAGATCAGCATTCATGTGGTGCGTTCTCTGTTGAAGTGCAGATTTTCATGGGGAGAACACTTCGTGTTGCCCGTAGTAAGCAGTTTGCGAAACTTCCCTCCGAAGATAAATCCCAATCTGAAGTTACATCAACTGATGTTAGTGTGGAGCTAGCTAATGCTGCTGCTCAAGTTTAAAACACGAAAGCTGGTGGACTAAAGAGTTTGCCATTGACCTTTTATTTTTCTTTTTCTTTCTCTTCTTTCTTTTTCCTTTTTGGAGGTAATGCTATCTAGTTATTTGAGTAAAGAACATATTACTTTTCTCTTTCCTTTTACTTATAAATCTCCTACATCTTATGTTTAAAGGACTCGAAGTTGGATACCCCAAAAGAAATCGCACATTACTGAAAATCCATATGGACTAACGAGTGTATATTACATCATTTATTTTATCTTTTCCCCATTCATTTAAGTCTCATTACCCACCCTTGACTCTTGAGTTATTTAAGATATTTAGTTGACCTCTTTTTCTCTTTTGTTTCTTAAAGTCCCAATAGTGCTTTATTTTGATCTCCTTTACTCCTTTCCGAAGAATCAACCTCCTGTTTCAAAAAGAAAAATGATGAAGGTTTTACTAAACGATTGCCCCAAGATGAGGTAATAGGCGTCTTTACTTTGTCTTGTGATCATAAATACTGGTGTACCTTATTAAGGTATTTGTTGAACAAAGTTCCAAGTTGGCCAAGGGGTAACATAGTTTTGGTTTTTGGTTTTAACTTGTTATGAACCTTATTCTTTTGTTGCATTCATCTGCTTATTCTTCTTTCTAGGAATAGAACCTCTTTTCCTTGCTTTATCATCAATAAAATTAGTCGTGAATACTGAATCCTGTGGCTGTGGTATTGCTTTATCATAGAAAGCAAATCGACATGTTTGATTGTGGCTAATTTTAATTGCGACACCATGATCTTAGTTAAAATAAGGTAAATCTTGCTACATATGCATGTTCACACGATCACATTGGGTTAAACCCGGCAAATGTTAACATAACTCCTCTCCAGGTTGTGGCAATTTAGAATTCATAGTCGTTGTCCGACGGATTTCTTGAGTGTTCGCGTTTATTTATGGCATGAAACAACTCGAAGCATGGGTCTAGCTTATTGATGACCCTAAGTTTTCTAGCCTTTTACCGTAGCCTAATAATTACATTGTTTTAAAGAGCCAGGAAAGCAGGAGAACGAGTATTGAGGAAGTGTATGTACTTATACTGATTTCACTTAAATGTCACCTGTCTGAAAACCTGAGATGAAGGACAAACTCTCTGTCTTCCTCCCTACCTCCATTTCTTTTTTCTGCTTGGAGAGAGCAGTGGCGGGGGACTGGCATGTACACTTGAATTGGCATCTTATGATTATGGTGTTCTATTTTGTCTTCCTATATTTCCCCGGTAAAGCCTCTTGGTGGGGTTTGACGAGTCCTCCTTTCTCTTAGGTTGGCAACCCATCTTAATGCATTCTCATTCATGTGGACTACATTGCATAGTCACAGTATTGTATTGAGTCGAGAATGTTAACTGACGATTGGTGCAATTTGCTTTTTGATAGATAGATGGTTGGGTGGGTTGGCACCATTCCTATGTGCATTCTCATTCATGTGTACTCTATTGCACAATCACAGTGTACTGCATCGTTCAGAACAGTAACAGATAATTGGTGTGATTTCATTGTCTGATATTTGCTCTATATAGATAGGTTGGGGGGGGGGGGGGGGGGGNNNNNGGGGGGGGGGGGGGGGGGTTACATTTCCTACGTGCTGTGAACTATGTTGCTTAATCACAGCATTGTACTGAATCGAGAACTTTAAAGGGATGGCCTCTGCAATTTGTTTTTTTAGATAATTGCTTTATATGCCTAAAGCTCCGATCAAGATGCAATAGACATTGAGTTCTTGAACGTCATGACTTCATTCTGTCATTTGAACTATGTTATGTGGTTTCTGGAGCAAGTATTGAAGGTGCCAGATATTATCCCCAAATGCACTGTTCATTGTTTATTCTTGTTCAAGCCATGATAAGTTGACCTTCTTCGTTAGAACATAAATGATTCAGATTACTTTATTGTTTCTCTGTTTGCTTCTTCTCGCCTTCTAAAGTGGCATGTGGATAGGGTTGGAGTTATGGCGTAAGTCTGCATTTCTGTTTGAATGCATTTTGAAGCCTATGTCTCTGTTGTCCTTTATATTAATACTTGGTTAGAAATATGATTCATTGCTTTTTCGCACTCTAGTAGGGTTGTTTGGAAGGTCATTTTTCGTTTAAGTTGCTTATCGCGTGCTGATGATGTCGAATTTGCTTGTGGCTAAATTAAATTATCTCAGGTTTGGGACAGAAAAGAGAGAATATTTTGATTTAGAAAGAGAGATGCTGGTTGTTGTTAAATTTTCCCGCAAGCCAGTTGGTTTAACTTTGAAGGCGTAGCAGGAGTTGCAGTCTGTAGAGTTGAGCTTAAGTGCTTTTAAAGTATTTTAAATACAAACTTAAATGTTATAAACTTCACCATTGCTCTGAACTTTTTGTCCTCTGCAGGAACAGATGCTTGATCAAGAGAAAACGTGCAATCTATTGCAAAGTTAAGAACATCTTTTAAATGCTTTTGTTTTAGCTGTTGAACATAATGCTTCCCCACTTATGATCTCTGTAAATCAGATAGGTACATGACTGTGGTTCTAGTTAGATTCACTCATCATCTCGAGATGAGACTAGTAAATATATGTTTTTTTTAGTATAAGTGGAGATGGGAGATTCGAACCAATAACCTCTTGATCTGATATAGGTGTCAATTACCCCCAAGCTAAGCACATATTGACGATTAACAAACGTTGAATGACCTTTAAACATATTTTTTTTCCCATTTAGTTACATATTTTTTTCCCATTTAGTTCAGTACCCAGTTTTAAAACATTATTGTCTTGATTCACAGTGAAAAAAGAAAGGATACATTGCCTTTGTATTAGTTAACATTCTTGTCAAACTTCTCCAAGGGAGTTGAATAATTAGAAATAAGAGACCTTTAGATGATTGATACCATCAACTTGTGCTACGAAGCATGGATATGGACACGACACGAACATGTCATTTTCTAAAAATCTCGGACACGAACACGACAAAGACACGTTTATTATAATATACAATTTTTTTTATGTATATATCATTTTTATACCAGAAGTAAATTCATTTGCATTTTTATGCTTAAAAAAATGACTTTGATGTATTTTGTTATCAAAATATATTATTTTATCCTGTATTACTTTTTAGGTCTATTCTCATGCTTAACAAGTGTTGTTTCACATTTGTCTAACAAGTGTCGGATCAATATTTACTTTATACAAATAGTGTCTCACACACATCTATTGAACTAACAAATGTATGATCTAATTCGTGTCAATTAAGTGTTAGAGTGATCCATAGGTTACCCAAACTAAAGTACCTGTGCCTCTTAGTGCTTTATGTTACCACAAATCTGGCATTGCCCAGTTTGGCAATTAAGTTGCATAAAGATTTCTGTTCTCTATACTCTAAAGGTAGGGAAGCTGTGGAGAAGAACAGAGGAGTAGTTGGCTTGAAGCCTACGAGGGCCCCATTAGAGCCCCAACTGGAAGGCACTTCTTCTGAACCTCAATCCACGTGGAGCTATGTTAATGGCAGTGCACAAATTGGGGATGGTTTTGGTGAGTTTCAAGTTTATAGTGCCAAACCACCTCATTTTGCTGTTTATTTAGGCAATAATGCAAACGGTTCATCTTCCTTATAATGACTTCCTTTGGCCCTTTTACTTTTAGACTCTTCTTTGTTTGGTGGAATGTTTTATCATGACCAACCACAGCTAAAGTTCAAACTTCACCAACATGTCTTCACCAACATGTCTAAGTTGCAAGAGTTCAACCGTGAGAATTGGGTTAGTTTATAATTTTCGTTCAAGATTTAAATTCTCGAATCCTATTTGTATCTTCGTAGAAACGAAAAGTTCACCTGGATCTGTGATAATATCTCCAACAAGATTTAACGAACAAGTCTTGCTTTTACATGAGATTGTCATTTTAATTCCTCCAATTTCACAGCTAATTTCTTCATTGACATATATTTTGGAAGGTTTAGTAGACTTGAAGCATTCATTATATATCATGCCACCCCATGGCATAATTGTACAAACTTTAAATTATGGTGTTTTAAGCCCATAGCCATGGCATCTTTTCAATCACTTTCTCAAGTCATTATAATCCCATAGACTTTATACCACACCAACCGCAAAATTGTGATCCCAAGGAAATGGCAGAAAAACTATCATTGTCTGCACAAACAAGATCTAGCCAGCTTTCACATGCATTTCTTCATTTGCACACAACCTACCATTTGACTCATGTGAAGGAAGTTTGATAAAAAATACATGAAAAGTAAAGTAATTGACCTGCTTGGATATATGCATAATTTACTTCATTAAGCTATGTATTCCAACAACTTAACAGAAAGAAATGGTTTCTTGAAGATATGGTCATCTCAGCCAGTTAAAGGCAAGAACTCATAAATGTTACGTCATTCATTACAAGTGTTCCAAAAATACTGTTAATCTCAATGCTATACTTTAATGGTCTTTATAATGTAAAGAAATACTATTTTATTTTTTAACATTTGAACCCACTATAAGGTTTAATTTTGAACTATTAGACTAAATTCAAATCCTCTCCATGTAAATAACTAATTTAGAGTAGAAAGTACTTGTCAAAAGTAGGAAAATACTTAAGTCCTCACTGGTTAAGATCTATCTCTATGTTGGCACTTCTTCCGGAGCTAGCGAGCCTCGGAGGGGTGGACACTACTAACCAAACCACCACTGTTAAAAAACTGACAAGTTTTTACATTTCTCTCTTAATTGTCAAATATTTAACCAAATAGGTTATCTATTTTGCCCAAAAAGATATTAGGTAAAAAGTATGAGTTAAGTTATCACCACACTACCAAAATTATTTGCACTAAGACCAAAATTTACTGACTCTCCTAACAACAACAGCTCCCCCTTTTTCCCATTATATATATTCAAAACCTTCAATCCTCTGTTTCCATCTGGAAATCCCTGTGTAGTGTGTAGCCCTCTCTACTCTAACGCACACCACTTCACTTGTTGAATCAATTACCTTCAATGGCGAGCTTCCATGCCGGAGTTGTTTGCCTTCTGGTTCTTGGCTTCTCCATGGTGGAGCCGAATGCGGCCACGGTTTACACCGTCGGAGACACTTCCGGTTGGGGCCTCGGCGTTGATTATAGCACATGGACTTCCGGGAAGACCTTCCTTGTTGGCGATAAACTTGGTTTGCTCATATTTCATCTATTTTTTTTCTCATGGGAATAACGTCGAACACCTTGCGTGCATTTGTATTTGGTCATATTATTCTATTTTTCTCTTGTGGGAATAACGTCGAACACCTTTCGTGCATTCGTATTTACTTAAATTCCCTCTTCAAATTTCTTCGTAACAGCGTTCAGCTATGCCGGAGGGCACACGGTGGACGAAGTAACTGCCAGTGATTACAAAGCCTGCACCGCCGGAAACTCCATAACTTCAGATAGTTCAGGCTCCACCACCATCACCTTAAAGACCGCCGGAACTCACTACTTCATTTGCAGCGCCATGGGGCACTGCGATGGCGGCATGAAGCTCTCTGTCACAGTCGCCGCCGGAGGATCTCCCACTTCTCCATCTTCAGGGGGAGGCAGCTCCTCCACCCCGGCGTCGCCGGCAAGTGACACGCCTTCAGCCACCGGGACCACACCGGCGGCGACCACGCCGACGACAAAGCTTCCTGCTGGTTCGCCGAATTCAGCGCTGTCTCTTCTCCCCAAATTCTACGTCGCCGTTGTGGCGATTTTGGTGGGTTCATGGGCGTTGGCTATGCATTATTGAGGATTTGAATTCGGTAAAGGCATATAGATATATAGATATTATGTGGTGGCCGGCGCTGGTTTTGGCCGGGATAGAGGCAGTGCGATTTCGCTTTCTCATTTGTTTTATATATGATTGGTCGCTTCGGTTGGTCTATTTTTCACATCGTTTCGTTGTTAGAATTTTTAATTTAATTTTGTCTCTTTTTCCCTCAAAATTCAACAATTTCCTTTCAGCTTGCTATTGGTCTGTGCTAATACTATGTAAAAATAAAATATTATTTTCCCC

mRNA sequence

AATACATAGACCAGTAAGAAAAAAAAAAGAAAGAAATAATGACTTTGAAAACAGGACATGGATCAATTTTTTACAAAGGGCCACAGTAGACTGATTGAAAGAGATGTAGTGGTAGTTCATTTGTTTTGGATACAAAATATTATGGGTTACAATTCCGTCATTCCCACCTATTACTTCTTCTCATTCCCACCTATTACTTCTTCTCAGGGCAATGATGGATACTTTACTTCTTTTCAGGGCAATAATGATACTTCTTCTCAGGGCAATGATAGATACTTTACTCTTTTCAGGGCAATAATGAAGTATCCATTGATATCGTCAATTGAGGTTGTCTAAGAATGGAGAGCGCTAGAGATTGACTATTGATTTTTCTCGAAAGATGGTCGAGCAAAGAAATTAAATCATCTTCCACAGCGAATGTAACGATGATAATAATATTATTTGGCTGATAAATAATAAACTGACTCTTAGACAAAAACTTAAATATAAAAAACAAAAATCAACAAAAGTTAAAATAACAAAAGAATATCTAAATTCTAAAGAATATATGTGTTGCGGCACTCTCAAATTCGTTAAAAATATCTGAGAAATCCAATCTGAAACGTCGACGTTTTAATCCTTTTCCGAACTCCCTTATCCAATCCATGGCGTTGCTCTGTATCGCTTCCCAAATTAGAAGAGAGTGAACAGAGTACAGTGAACGCCGGCCATGGCTCTGCTTCGTCTTCCTTGTTCTTCATCTTCCTCCTTCATCCGCTCCAAGCAACGCCACCCAATCTTTCTCGCATCTCTCTCATGCCCGCAAAATCCATCTCATTCTATCCATGGCGACATCCATCTCTCTCTTTCTACTTCTCTCACTCACCACCCTTCCATTTCCATTAGGGCTAAAAGAACCAGCAAGTCGATTTTCCAGTTTGTCTCGGCCTCCCATGACGAAACAGTAGCGAGAGTTCCTTCTGAAAGCGAAGGTCCGAAGATTGGTGCTGATGAATTTTCTCGAACCAGATTGCTTGCGCAGAACGTGCCTTGGAATTCTACTCCTGAGGACATTCGGTCTCTGTTTGAGAAATATGGAACTGTCCTCGACGTGGAGCTTTCGATGTATAACAAGATCAGAAACAGGGGCTTGGCGTTTGTCACAATGGGATCACCTGAGGAGGCTCTTACGGCGCTCAATAATCTCGAATCGTATGAATATGAGGGTCGTACTCTGAGGCTCAATTATGCAAAGATTAAAAAAGAAAAACCTTACCCCCCTCCTGTGAAACCAAAACCAGTTACTTTTAATTTGTTTGTGGCAAATTTGCCATATGACGCAAGAGCAAAGGACCTCAAGGAGTTCTTTGATTCGGGGAGTGGTAATGTAGTTTCTGCACAAGTTATTTTTAATGAGAATCCGAGAAGGTCTTCTGGATATGGTTTTGTGGCCTTCAAAACAAAGAAGGATGCTGAAGCAGCCATTTCTGATTTCCAAGGGAAGATTTTCATGGGGAGAACACTTCGTGTTGCCCGTAGTAAGCAGTTTGCGAAACTTCCCTCCGAAGATAAATCCCAATCTGAAGTTACATCAACTGATGTTAGTGTGGAGCTAGCTAATGCTGCTGCTCAAGTTTAAAACACGAAAGCTGGTGGACTAAAGAGTTTGCCATTGACCTTTTATTTTTCTTTTTCTTTCTCTTCTTTCTTTTTCCTTTTTGGAGGTAATGCTATCTAGTTATTTGAGTAAAGAACATATTACTTTTCTCTTTCCTTTTACTTATAAATCTCCTACATCTTATGTTTAAAGGACTCGAAGTTGGATACCCCAAAAGAAATCGCACATTACTGAAAATCCATATGGACTAACGAGTGTATATTACATCATTTATTTTATCTTTTCCCCATTCATTTAAGTCTCATTACCCACCCTTGACTCTTGAGTTATTTAAGATATTTAGTTGACCTCTTTTTCTCTTTTGTTTCTTAAAGTCCCAATAGTGCTTTATTTTGATCTCCTTTACTCCTTTCCGAAGAATCAACCTCCTGTTTCAAAAAGAAAAATGATGAAGGTTTTACTAAACGATTGCCCCAAGATGAGGTAATAGGCGTCTTTACTTTGTCTTGTGATCATAAATACTGGTGTACCTTATTAAGGTATTTGTTGAACAAAGTTCCAAGTTGGCCAAGGGGTAACATAGTTTTGGTTTTTGGTTTTAACTTGTTATGAACCTTATTCTTTTGTTGCATTCATCTGCTTATTCTTCTTTCTAGGAATAGAACCTCTTTTCCTTGCTTTATCATCAATAAAATTAGTCGTGAATACTGAATCCTGTGGCTGTGGTATTGCTTTATCATAGAAAGCAAATCGACATGTTTGATTGTGGCTAATTTTAATTGCGACACCATGATCTTAGTTAAAATAAGGTAAATCTTGCTACATATGCATGTTCACACGATCACATTGGGTTAAACCCGGCAAATGTTAACATAACTCCTCTCCAGGTTGTGGCAATTTAGAATTCATAGTCGTTGTCCGACGGATTTCTTGAGTGTTCGCGTTTATTTATGGCATGAAACAACTCGAAGCATGGGTCTAGCTTATTGATGACCCTAAGTTTTCTAGCCTTTTACCGTAGCCTAATAATTACATTGTTTTAAAGAGCCAGGAAAGCAGGAGAACGAGTATTGAGGAAGTGTATGTACTTATACTGATTTCACTTAAATGTCACCTGTCTGAAAACCTGAGATGAAGGACAAACTCTCTGTCTTCCTCCCTACCTCCATTTCTTTTTTCTGCTTGGAGAGAGCAGTGGCGGGGGACTGGCATGTACACTTGAATTGGCATCTTATGATTATGGTGTTCTATTTTGTCTTCCTATATTTCCCCGGTAAAGCCTCTTGGTGGGGTTTGACGAGTCCTCCTTTCTCTTAGGTTTGGGACAGAAAAGAGAGAATATTTTGATTTAGAAAGAGAGATGCTGGTTGTTGTTAAATTTTCCCGCAAGCCAGTTGGTTTAACTTTGAAGGCGTAGCAGGAGTTGCAGTCTGTAGAGAACAGATGCTTGATCAAGAGAAAACGTGCAATCTATTGCAAAGTTAAGAACATCTTTTAAATGCTTTTGTTTTAGCTGTTGAACATAATGCTTCCCCACTTATGATCTCTGTAAATCAGATAGGTACATGACTGTGGTTCTAGTTAGATTCACTCATCATCTCGAGATGAGACTAGTAAATATATGTTTTTTTTAGTATAAGTGGAGATGGGAGATTCGAACCAATAACCTCTTGATCTGATATAGGTGTCAATTACCCCCAAGCTAAGCACATATTGACGATTAACAAACGTTGAATGACCTTTAAACATATTTTTTTTCCCATTTAGTTACATATTTTTTTCCCATTTAGTTCAGTACCCAGTTTTAAAACATTATTGTCTTGATTCACAGTGAAAAAAGAAAGGATACATTGCCTTTGTATTAGTTAACATTCTTGTCAAACTTCTCCAAGGGAGTTGAATAATTAGAAATAAGAGACCTTTAGATGATTGATACCATCAACTTGTGCTACGAAGCATGGATATGGACACGACACGAACATGTCATTTTCTAAAAATCTCGGACACGAACACGACAAAGACACGTTTATTATAATATACAATTTTTTTTATGTATATATCATTTTTATACCAGAAGTAAATTCATTTGCATTTTTATGCTTAAAAAAATGACTTTGATGTATTTTGTTATCAAAATATATTATTTTATCCTGTATTACTTTTTAGGTCTATTCTCATGCTTAACAAGTGTTGTTTCACATTTGTCTAACAAGTGTCGGATCAATATTTACTTTATACAAATAGTGTCTCACACACATCTATTGAACTAACAAATGTATGATCTAATTCGTGTCAATTAAGTGTTAGAGTGATCCATAGGTTACCCAAACTAAAGTACCTGTGCCTCTTAGTGCTTTATGTTACCACAAATCTGGCATTGCCCAGTTTGGCAATTAAGTTGCATAAAGATTTCTGTTCTCTATACTCTAAAGGTAGGGAAGCTGTGGAGAAGAACAGAGGAGTAGTTGGCTTGAAGCCTACGAGGGCCCCATTAGAGCCCCAACTGGAAGGCACTTCTTCTGAACCTCAATCCACGTGGAGCTATGTTAATGGCAGTGCACAAATTGGGGATGGTTTTGACTCTTCTTTGTTTGGTGGAATGTTTTATCATGACCAACCACAGCTAAAGTTCAAACTTCACCAACATGTCTTCACCAACATGTCTAAGTTGCAAGAGTTCAACCGTGAGAATTGGCGTTCAGCTATGCCGGAGGGCACACGGTGGACGAAGTAACTGCCAGTGATTACAAAGCCTGCACCGCCGGAAACTCCATAACTTCAGATAGTTCAGGCTCCACCACCATCACCTTAAAGACCGCCGGAACTCACTACTTCATTTGCAGCGCCATGGGGCACTGCGATGGCGGCATGAAGCTCTCTGTCACAGTCGCCGCCGGAGGATCTCCCACTTCTCCATCTTCAGGGGGAGGCAGCTCCTCCACCCCGGCGTCGCCGGCAAGTGACACGCCTTCAGCCACCGGGACCACACCGGCGGCGACCACGCCGACGACAAAGCTTCCTGCTGGTTCGCCGAATTCAGCGCTGTCTCTTCTCCCCAAATTCTACGTCGCCGTTGTGGCGATTTTGGTGGGTTCATGGGCGTTGGCTATGCATTATTGAGGATTTGAATTCGGTAAAGGCATATAGATATATAGATATTATGTGGTGGCCGGCGCTGGTTTTGGCCGGGATAGAGGCAGTGCGATTTCGCTTTCTCATTTGTTTTATATATGATTGGTCGCTTCGGTTGGTCTATTTTTCACATCGTTTCGTTGTTAGAATTTTTAATTTAATTTTGTCTCTTTTTCCCTCAAAATTCAACAATTTCCTTTCAGCTTGCTATTGGTCTGTGCTAATACTATGTAAAAATAAAATATTATTTTCCCC

Coding sequence (CDS)

ATGGCTCTGCTTCGTCTTCCTTGTTCTTCATCTTCCTCCTTCATCCGCTCCAAGCAACGCCACCCAATCTTTCTCGCATCTCTCTCATGCCCGCAAAATCCATCTCATTCTATCCATGGCGACATCCATCTCTCTCTTTCTACTTCTCTCACTCACCACCCTTCCATTTCCATTAGGGCTAAAAGAACCAGCAAGTCGATTTTCCAGTTTGTCTCGGCCTCCCATGACGAAACAGTAGCGAGAGTTCCTTCTGAAAGCGAAGGTCCGAAGATTGGTGCTGATGAATTTTCTCGAACCAGATTGCTTGCGCAGAACGTGCCTTGGAATTCTACTCCTGAGGACATTCGGTCTCTGTTTGAGAAATATGGAACTGTCCTCGACGTGGAGCTTTCGATGTATAACAAGATCAGAAACAGGGGCTTGGCGTTTGTCACAATGGGATCACCTGAGGAGGCTCTTACGGCGCTCAATAATCTCGAATCGTATGAATATGAGGGTCGTACTCTGAGGCTCAATTATGCAAAGATTAAAAAAGAAAAACCTTACCCCCCTCCTGTGAAACCAAAACCAGTTACTTTTAATTTGTTTGTGGCAAATTTGCCATATGACGCAAGAGCAAAGGACCTCAAGGAGTTCTTTGATTCGGGGAGTGGTAATGTAGTTTCTGCACAAGTTATTTTTAATGAGAATCCGAGAAGGTCTTCTGGATATGGTTTTGTGGCCTTCAAAACAAAGAAGGATGCTGAAGCAGCCATTTCTGATTTCCAAGGGAAGATTTTCATGGGGAGAACACTTCGTGTTGCCCGTAGTAAGCAGTTTGCGAAACTTCCCTCCGAAGATAAATCCCAATCTGAAGTTACATCAACTGATGTTAGTGTGGAGCTAGCTAATGCTGCTGCTCAAGTTTAA

Protein sequence

MALLRLPCSSSSSFIRSKQRHPIFLASLSCPQNPSHSIHGDIHLSLSTSLTHHPSISIRAKRTSKSIFQFVSASHDETVARVPSESEGPKIGADEFSRTRLLAQNVPWNSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLNYAKIKKEKPYPPPVKPKPVTFNLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPRRSSGYGFVAFKTKKDAEAAISDFQGKIFMGRTLRVARSKQFAKLPSEDKSQSEVTSTDVSVELANAAAQV

Homology

[Close]

BLAST of MC11g0580 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.3e-19
Identity = 69/244 (28.28%), Postives = 129/244 (52.87%), Query Frame = 0


Query: 71  VSASHDETVARVPSESEGPKIGADEFSRTRLLAQNVPWNSTPEDIRSLFEKYGTVLDVEL 130
           V    DE    V  E +  +   +E    RL   N+P+  T  ++  +F + GTV+DV++
Sbjct: 91  VEEEGDEGEEEVEEEKQTTQASGEE---GRLYVGNLPYTITSSELSQIFGEAGTVVDVQI 150

Query: 131 SMYNKI--RNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLNYAKIKK---EKPYPPP 190
            +Y+K+  R+RG  FVTMGS EEA  A+    S +  GRT+++N+ ++ +    +     
Sbjct: 151 -VYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTK 210

Query: 191 VKPKPVTF-----NLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPRRSSGYGFV 250
           ++    ++      ++  NL ++  ++ LK+ F    G V+ A+VI+  N  RS G+GF+
Sbjct: 211 IRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPG-VLGAKVIYERNTGRSRGFGFI 270

Query: 251 AFKTKKDAEAAISDFQGKIFMGRTLRV----ARSKQFAKLPSEDKSQSEVTSTDVSVELA 301
           +F++ ++ ++A++   G    GR LR+     R K     PS ++ ++E  S + +  L+
Sbjct: 271 SFESAENVQSALATMNGVEVEGRALRLNLASEREKPTVSPPSVEEGETEEASLESNEVLS 329

[Close]

BLAST of MC11g0580 vs. ExPASy Swiss-Prot
Match: P19682 (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-19
Identity = 74/242 (30.58%), Postives = 123/242 (50.83%), Query Frame = 0


Query: 44  LSLSTSLTHHPSISIRAKRTSKSIFQFVSASHDETVARVPSESEGP------KIGADE-- 103
           +SLS+SL     +S+  + T    F  V +  D T+     E  G       + G  E  
Sbjct: 33  ISLSSSLP--TLLSLNKRTTQFPTFVSVLSEDDNTLVLDDQEQGGDFPSFVGEAGETEEY 92

Query: 104 ---FSRTRLLAQNVPWNSTPEDIRSLFEKYGTVLDVELSMYNK--IRNRGLAFVTMGSPE 163
                  +L   N+P++   E +  LF++ G V+++   +YN+   R+RG  FVTM + E
Sbjct: 93  QEPSEDAKLFVGNLPYDIDSEGLAQLFQQAG-VVEIAEVIYNRETDRSRGFGFVTMSTVE 152

Query: 164 EALTALNNLESYEYEGRTLRLNYAKIKKEKPYPPPVKPKPVTFNLFVANLPYDARAKDLK 223
           EA  A+     Y+  GR L +N A  +  +P   P   +P T+ ++V N+P+D     L+
Sbjct: 153 EADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQP-TYRIYVGNIPWDIDDARLE 212

Query: 224 EFFDSGSGNVVSAQVIFNENPRRSSGYGFVAFKTKKDAEAAISDFQGKIFMGRTLRVARS 273
           + F S  G VVSA+V+F+    RS G+GFV   ++ +   AI++  G+   GRT+RV  +
Sbjct: 213 QVF-SEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAA 269

[Close]

BLAST of MC11g0580 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.2e-18
Identity = 78/262 (29.77%), Postives = 130/262 (49.62%), Query Frame = 0


Query: 22  PIFLASLSCPQNPSHSIHGDIHLSLSTSLTHHPSISIRAK-RTSKSIFQFVSASHDET-- 81
           PI L  LSC  +P   +      S+S       ++ +  + + S  +F F   S +ET  
Sbjct: 47  PIKLLHLSCTYSPC-ILSPKKKTSVSALQEEENTLILDGQGQESGDLFNF-EPSGEETEE 106

Query: 82  ---VARVPSESEGPKIGADEFSR--------TRLLAQNVPWNSTPEDIRSLFEKYGTVLD 141
              V  V    E  ++ ADE            +L   N+P++   E +  LFE+ G V++
Sbjct: 107 EGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAG-VVE 166

Query: 142 VELSMYNK--IRNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLNYAKIKKEKPYPPP 201
           +   +YN+   ++RG  FVTM + EEA  A+     Y+  GR L +N A  + E+P  PP
Sbjct: 167 IAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPP 226

Query: 202 VKPKPVTFNLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPRRSSGYGFVAFKTK 261
            +    ++ ++V N+P+      L++ F S  G VVSA+V+++    RS G+GFV   ++
Sbjct: 227 -RTFEQSYRIYVGNIPWGIDDARLEQLF-SEHGKVVSARVVYDRETGRSRGFGFVTMASE 286

Query: 262 KDAEAAISDFQGKIFMGRTLRV 268
            +   AI++  G+   GRT+RV
Sbjct: 287 AEMSDAIANLDGQSLDGRTIRV 303

[Close]

BLAST of MC11g0580 vs. ExPASy Swiss-Prot
Match: Q04836 (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A PE=1 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 9.2e-18
Identity = 64/188 (34.04%), Postives = 96/188 (51.06%), Query Frame = 0


Query: 86  SEGPKIGADEF----SRTRLLAQNVPWNSTPEDIRSLFEKYGTVLDVELSMYNK--IRNR 145
           SEG      EF       +L   N+ ++   + +  LFE+ GTV   E+ +YN+   ++R
Sbjct: 133 SEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEV-IYNRETDQSR 192

Query: 146 GLAFVTMGSPEEALTALNNLESYEYEGRTLRLNYAKIKKEKPYPPPVKPKPVTFNLFVAN 205
           G  FVTM S +EA TA+     Y+  GR L +N A  +  +P   P   +P  F ++V N
Sbjct: 193 GFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEP-AFRVYVGN 252

Query: 206 LPYDARAKDLKEFFDSGSGNVVSAQVIFNENPRRSSGYGFVAFKTKKDAEAAISDFQGKI 265
           LP+D     L++ F S  G VV A+V+++    RS G+GFV      +   AIS   G+ 
Sbjct: 253 LPWDVDNGRLEQLF-SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQN 312

Query: 266 FMGRTLRV 268
             GR +RV
Sbjct: 313 LEGRAIRV 317

[Close]

BLAST of MC11g0580 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.8e-17
Identity = 61/187 (32.62%), Postives = 97/187 (51.87%), Query Frame = 0


Query: 87  EGPKIGADEFS----RTRLLAQNVPWNSTPEDIRSLFEKYGTVLDVELSMYNK--IRNRG 146
           EG   G   FS      +L   N+P++   E +  +F+  G V+++   +YN+   R+RG
Sbjct: 39  EGGVEGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAG-VVEIAEVIYNRETDRSRG 98

Query: 147 LAFVTMGSPEEALTALNNLESYEYEGRTLRLNYAKIKKEKPYPPPVKPKPVTFNLFVANL 206
             FVTM + EEA  A+  L  Y+ +GR L +N A  +      P    +P +  ++V NL
Sbjct: 99  FGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEP-SCRVYVGNL 158

Query: 207 PYDARAKDLKEFFDSGSGNVVSAQVIFNENPRRSSGYGFVAFKTKKDAEAAISDFQGKIF 266
           P+D     L++ F S  G VVSA+V+ +    RS G+GFV   ++ +   AI+   G+  
Sbjct: 159 PWDVDTSRLEQLF-SEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTL 218

Query: 267 MGRTLRV 268
            GR +RV
Sbjct: 219 DGRAVRV 222

[Close]

BLAST of MC11g0580 vs. NCBI nr
Match: XP_022159726.1 (31 kDa ribonucleoprotein, chloroplastic [Momordica charantia])

HSP 1 Score: 583 bits (1504), Expect = 9.08e-210
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0


Query: 1   MALLRLPCSSSSSFIRSKQRHPIFLASLSCPQNPSHSIHGDIHLSLSTSLTHHPSISIRA 60
           MALLRLPCSSSSSFIRSKQRHPIFLASLSCPQNPSHSIHGDIHLSLSTSLTHHPSISIRA
Sbjct: 1   MALLRLPCSSSSSFIRSKQRHPIFLASLSCPQNPSHSIHGDIHLSLSTSLTHHPSISIRA 60

Query: 61  KRTSKSIFQFVSASHDETVARVPSESEGPKIGADEFSRTRLLAQNVPWNSTPEDIRSLFE 120
           KRTSKSIFQFVSASHDETVARVPSESEGPKIGADEFSRTRLLAQNVPWNSTPEDIRSLFE
Sbjct: 61  KRTSKSIFQFVSASHDETVARVPSESEGPKIGADEFSRTRLLAQNVPWNSTPEDIRSLFE 120

Query: 121 KYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLNYAKIKKEK 180
           KYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLNYAKIKKEK
Sbjct: 121 KYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLNYAKIKKEK 180

Query: 181 PYPPPVKPKPVTFNLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPRRSSGYGFV 240
           PYPPPVKPKPVTFNLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPRRSSGYGFV
Sbjct: 181 PYPPPVKPKPVTFNLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISDFQGKIFMGRTLRVARSKQFAKLPSEDKSQSEVTSTDVSVELANAAA 300
           AFKTKKDAEAAISDFQGKIFMGRTLRVARSKQFAKLPSEDKSQSEVTSTDVSVELANAAA
Sbjct: 241 AFKTKKDAEAAISDFQGKIFMGRTLRVARSKQFAKLPSEDKSQSEVTSTDVSVELANAAA 300

Query: 301 QV 302
           QV
Sbjct: 301 QV 302

[Close]

BLAST of MC11g0580 vs. NCBI nr
Match: XP_038897887.1 (31 kDa ribonucleoprotein, chloroplastic [Benincasa hispida])

HSP 1 Score: 463 bits (1192), Expect = 2.99e-162
Identity = 250/310 (80.65%), Postives = 273/310 (88.06%), Query Frame = 0


Query: 1   MALLRLPCSSSSSFIRSKQRHPIFLASLSCPQNPSHSIHGDIHLS--------LSTSLTH 60
           MAL+RLPCSSSSSF+RSKQ+H IFLA LSCPQNPS+ I+GD +LS        LSTS+ H
Sbjct: 1   MALVRLPCSSSSSFLRSKQQHLIFLAPLSCPQNPSYPINGDFNLSISRSSPSLLSTSIGH 60

Query: 61  HPSISIRAKRTSKSIFQFVSASHDETVARVPSESEGPKIGADEFSRTRLLAQNVPWNSTP 120
           +P ISIR KRTSK +FQF S S DE VA  PS+SE       EFS+TRLLAQNVPW+STP
Sbjct: 61  NPLISIRGKRTSKFVFQFASTSQDEAVASSPSDSE-------EFSQTRLLAQNVPWSSTP 120

Query: 121 EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLN 180
           EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL ALNNLESYE+EGRTLRLN
Sbjct: 121 EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLN 180

Query: 181 YAKIKKEKPYPPPVKPKPVTFNLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPR 240
           YAK+KKEKP PP VKPKPVTFNLFVANLP++ARAKDL+EFFDSGSGNVVSAQ+IF+ENPR
Sbjct: 181 YAKLKKEKPSPP-VKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPR 240

Query: 241 RSSGYGFVAFKTKKDAEAAISDFQGKIFMGRTLRVARSKQFAKLPSEDKSQSEVTSTDVS 300
           RSSGYGFVAFKTKKDAEAAIS+FQGKIFMGR+LRVARSKQF KLPSE+KSQSE  STD  
Sbjct: 241 RSSGYGFVAFKTKKDAEAAISEFQGKIFMGRSLRVARSKQFVKLPSEEKSQSEDASTD-D 300

Query: 301 VELANAAAQV 302
           VELANAAA+V
Sbjct: 301 VELANAAAEV 301

[Close]

BLAST of MC11g0580 vs. NCBI nr
Match: XP_008466190.1 (PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0038685.1 31 kDa ribonucleoprotein [Cucumis melo var. makuwa] >TYK31295.1 31 kDa ribonucleoprotein [Cucumis melo var. makuwa])

HSP 1 Score: 449 bits (1156), Expect = 9.03e-157
Identity = 244/310 (78.71%), Postives = 266/310 (85.81%), Query Frame = 0


Query: 1   MALLRLPCSSSSSFIRSKQRHPIFLASLSCPQNPSHSIHGDIHLS--------LSTSLTH 60
           MA +RLPCSSSSS +RSKQ H IFLA LSC QNPS+ I+GD +LS        LSTS+ H
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  HPSISIRAKRTSKSIFQFVSASHDETVARVPSESEGPKIGADEFSRTRLLAQNVPWNSTP 120
           +P ISI AKRTSK +FQF S S DE V+  PS+ E       EFSRTRLLAQNVPW+STP
Sbjct: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIE-------EFSRTRLLAQNVPWDSTP 120

Query: 121 EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLN 180
           EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL ALNNLESYE+EGRTLRLN
Sbjct: 121 EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLN 180

Query: 181 YAKIKKEKPYPPPVKPKPVTFNLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPR 240
           YAK+KKEKP PP VKPKPVTFNLFVANLP++ARAKDL+EFFDSGSGNVVSAQ+IF+ENPR
Sbjct: 181 YAKLKKEKPSPP-VKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPR 240

Query: 241 RSSGYGFVAFKTKKDAEAAISDFQGKIFMGRTLRVARSKQFAKLPSEDKSQSEVTSTDVS 300
           RSSGYGFVAFK KKDAEAAIS+FQGK FMGR+LRVARSKQF KLPSE+KSQSE  STD  
Sbjct: 241 RSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTD-G 300

Query: 301 VELANAAAQV 302
           VELANAAA+V
Sbjct: 301 VELANAAAEV 301

[Close]

BLAST of MC11g0580 vs. NCBI nr
Match: XP_004136268.1 (28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN60238.1 hypothetical protein Csa_002107 [Cucumis sativus])

HSP 1 Score: 448 bits (1153), Expect = 2.49e-156
Identity = 245/310 (79.03%), Postives = 266/310 (85.81%), Query Frame = 0


Query: 1   MALLRLPCSSSSSFIRSKQRHPIFLASLSCPQNPSHSIHGDIHLS--------LSTSLTH 60
           MA +RLPCSSSSS +RSK  H IFLA LSC QNPS+ I+GD +LS        LSTS++H
Sbjct: 1   MASVRLPCSSSSSILRSKHHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60

Query: 61  HPSISIRAKRTSKSIFQFVSASHDETVARVPSESEGPKIGADEFSRTRLLAQNVPWNSTP 120
            P ISIRAKRTS  +FQF S S DE V+  PS++E       EFS+TRLLAQNVPW+STP
Sbjct: 61  SPLISIRAKRTSTFVFQFASTSQDEAVSS-PSDTE-------EFSQTRLLAQNVPWDSTP 120

Query: 121 EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLN 180
           EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL ALNNLESYE+EGRTLRLN
Sbjct: 121 EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLN 180

Query: 181 YAKIKKEKPYPPPVKPKPVTFNLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPR 240
           YAK+KKEKP PP VKPKPVTFNLFVANLP+DARAKDLKEFFDSGSGNVVSAQ+IFNENPR
Sbjct: 181 YAKLKKEKPSPP-VKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPR 240

Query: 241 RSSGYGFVAFKTKKDAEAAISDFQGKIFMGRTLRVARSKQFAKLPSEDKSQSEVTSTDVS 300
           RSSGYGFVAFKTKKDAEAAIS+FQGK FMGR+LRVARSKQF KLPSE+K QSE  STD  
Sbjct: 241 RSSGYGFVAFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTD-G 300

Query: 301 VELANAAAQV 302
           VELANAAA+V
Sbjct: 301 VELANAAAEV 300

[Close]

BLAST of MC11g0580 vs. NCBI nr
Match: XP_023535968.1 (28 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 434 bits (1116), Expect = 1.11e-150
Identity = 235/310 (75.81%), Postives = 264/310 (85.16%), Query Frame = 0


Query: 1   MALLRLPCSSSSSFIRSKQRHPIFLASLSCPQNPSHSIHGDIHLSLS--------TSLTH 60
           MAL+RLPCSSSS F+RS Q++ +F++ LSCPQNPS+S +GDI LSLS        T L H
Sbjct: 1   MALVRLPCSSSSLFLRSNQQNLVFISPLSCPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  HPSISIRAKRTSKSIFQFVSASHDETVARVPSESEGPKIGADEFSRTRLLAQNVPWNSTP 120
           +P  SIRAKRT K +FQ  S S D+ VA   S++E       EFSR RLLAQNVPWNSTP
Sbjct: 61  NPLTSIRAKRTRKFVFQLASTSQDDAVASSSSDAE-------EFSRNRLLAQNVPWNSTP 120

Query: 121 EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLN 180
           EDIRSLFEKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEAL A+NNLESYE+ GRTL+LN
Sbjct: 121 EDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLN 180

Query: 181 YAKIKKEKPYPPPVKPKPVTFNLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPR 240
           YAK+KKEKP PP VKP PVTFNLFVANLP+DARAKDL+EFFDSGSGNVVSAQ+IF+ENPR
Sbjct: 181 YAKVKKEKPSPP-VKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPR 240

Query: 241 RSSGYGFVAFKTKKDAEAAISDFQGKIFMGRTLRVARSKQFAKLPSEDKSQSEVTSTDVS 300
           RSSGYGFVAFKTKKDAEAAIS+FQGK FMGR+LRVARSKQF KLPSE+KSQSE TST+  
Sbjct: 241 RSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTE-G 300

Query: 301 VELANAAAQV 302
           VELA+AAA+V
Sbjct: 301 VELASAAAEV 301

[Close]

BLAST of MC11g0580 vs. ExPASy TrEMBL
Match: A0A6J1E4S9 (31 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111026062 PE=4 SV=1)

HSP 1 Score: 583 bits (1504), Expect = 4.40e-210
Identity = 302/302 (100.00%), Postives = 302/302 (100.00%), Query Frame = 0


Query: 1   MALLRLPCSSSSSFIRSKQRHPIFLASLSCPQNPSHSIHGDIHLSLSTSLTHHPSISIRA 60
           MALLRLPCSSSSSFIRSKQRHPIFLASLSCPQNPSHSIHGDIHLSLSTSLTHHPSISIRA
Sbjct: 1   MALLRLPCSSSSSFIRSKQRHPIFLASLSCPQNPSHSIHGDIHLSLSTSLTHHPSISIRA 60

Query: 61  KRTSKSIFQFVSASHDETVARVPSESEGPKIGADEFSRTRLLAQNVPWNSTPEDIRSLFE 120
           KRTSKSIFQFVSASHDETVARVPSESEGPKIGADEFSRTRLLAQNVPWNSTPEDIRSLFE
Sbjct: 61  KRTSKSIFQFVSASHDETVARVPSESEGPKIGADEFSRTRLLAQNVPWNSTPEDIRSLFE 120

Query: 121 KYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLNYAKIKKEK 180
           KYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLNYAKIKKEK
Sbjct: 121 KYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLNYAKIKKEK 180

Query: 181 PYPPPVKPKPVTFNLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPRRSSGYGFV 240
           PYPPPVKPKPVTFNLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPRRSSGYGFV
Sbjct: 181 PYPPPVKPKPVTFNLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPRRSSGYGFV 240

Query: 241 AFKTKKDAEAAISDFQGKIFMGRTLRVARSKQFAKLPSEDKSQSEVTSTDVSVELANAAA 300
           AFKTKKDAEAAISDFQGKIFMGRTLRVARSKQFAKLPSEDKSQSEVTSTDVSVELANAAA
Sbjct: 241 AFKTKKDAEAAISDFQGKIFMGRTLRVARSKQFAKLPSEDKSQSEVTSTDVSVELANAAA 300

Query: 301 QV 302
           QV
Sbjct: 301 QV 302

[Close]

BLAST of MC11g0580 vs. ExPASy TrEMBL
Match: A0A5A7TBD1 (31 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005930 PE=4 SV=1)

HSP 1 Score: 449 bits (1156), Expect = 4.37e-157
Identity = 244/310 (78.71%), Postives = 266/310 (85.81%), Query Frame = 0


Query: 1   MALLRLPCSSSSSFIRSKQRHPIFLASLSCPQNPSHSIHGDIHLS--------LSTSLTH 60
           MA +RLPCSSSSS +RSKQ H IFLA LSC QNPS+ I+GD +LS        LSTS+ H
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  HPSISIRAKRTSKSIFQFVSASHDETVARVPSESEGPKIGADEFSRTRLLAQNVPWNSTP 120
           +P ISI AKRTSK +FQF S S DE V+  PS+ E       EFSRTRLLAQNVPW+STP
Sbjct: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIE-------EFSRTRLLAQNVPWDSTP 120

Query: 121 EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLN 180
           EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL ALNNLESYE+EGRTLRLN
Sbjct: 121 EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLN 180

Query: 181 YAKIKKEKPYPPPVKPKPVTFNLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPR 240
           YAK+KKEKP PP VKPKPVTFNLFVANLP++ARAKDL+EFFDSGSGNVVSAQ+IF+ENPR
Sbjct: 181 YAKLKKEKPSPP-VKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPR 240

Query: 241 RSSGYGFVAFKTKKDAEAAISDFQGKIFMGRTLRVARSKQFAKLPSEDKSQSEVTSTDVS 300
           RSSGYGFVAFK KKDAEAAIS+FQGK FMGR+LRVARSKQF KLPSE+KSQSE  STD  
Sbjct: 241 RSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTD-G 300

Query: 301 VELANAAAQV 302
           VELANAAA+V
Sbjct: 301 VELANAAAEV 301

[Close]

BLAST of MC11g0580 vs. ExPASy TrEMBL
Match: A0A1S3CS17 (31 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503681 PE=4 SV=1)

HSP 1 Score: 449 bits (1156), Expect = 4.37e-157
Identity = 244/310 (78.71%), Postives = 266/310 (85.81%), Query Frame = 0


Query: 1   MALLRLPCSSSSSFIRSKQRHPIFLASLSCPQNPSHSIHGDIHLS--------LSTSLTH 60
           MA +RLPCSSSSS +RSKQ H IFLA LSC QNPS+ I+GD +LS        LSTS+ H
Sbjct: 1   MASVRLPCSSSSSILRSKQHHHIFLAPLSCSQNPSYPINGDFNLSVSRSSPSLLSTSICH 60

Query: 61  HPSISIRAKRTSKSIFQFVSASHDETVARVPSESEGPKIGADEFSRTRLLAQNVPWNSTP 120
           +P ISI AKRTSK +FQF S S DE V+  PS+ E       EFSRTRLLAQNVPW+STP
Sbjct: 61  NPLISIMAKRTSKFVFQFASTSQDEAVSSSPSDIE-------EFSRTRLLAQNVPWDSTP 120

Query: 121 EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLN 180
           EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL ALNNLESYE+EGRTLRLN
Sbjct: 121 EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLN 180

Query: 181 YAKIKKEKPYPPPVKPKPVTFNLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPR 240
           YAK+KKEKP PP VKPKPVTFNLFVANLP++ARAKDL+EFFDSGSGNVVSAQ+IF+ENPR
Sbjct: 181 YAKLKKEKPSPP-VKPKPVTFNLFVANLPFEARAKDLREFFDSGSGNVVSAQIIFHENPR 240

Query: 241 RSSGYGFVAFKTKKDAEAAISDFQGKIFMGRTLRVARSKQFAKLPSEDKSQSEVTSTDVS 300
           RSSGYGFVAFK KKDAEAAIS+FQGK FMGR+LRVARSKQF KLPSE+KSQSE  STD  
Sbjct: 241 RSSGYGFVAFKAKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKSQSEDASTD-G 300

Query: 301 VELANAAAQV 302
           VELANAAA+V
Sbjct: 301 VELANAAAEV 301

[Close]

BLAST of MC11g0580 vs. ExPASy TrEMBL
Match: A0A0A0LEN0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889940 PE=4 SV=1)

HSP 1 Score: 448 bits (1153), Expect = 1.21e-156
Identity = 245/310 (79.03%), Postives = 266/310 (85.81%), Query Frame = 0


Query: 1   MALLRLPCSSSSSFIRSKQRHPIFLASLSCPQNPSHSIHGDIHLS--------LSTSLTH 60
           MA +RLPCSSSSS +RSK  H IFLA LSC QNPS+ I+GD +LS        LSTS++H
Sbjct: 1   MASVRLPCSSSSSILRSKHHHQIFLAPLSCSQNPSYPINGDFNLSISRSSPSLLSTSISH 60

Query: 61  HPSISIRAKRTSKSIFQFVSASHDETVARVPSESEGPKIGADEFSRTRLLAQNVPWNSTP 120
            P ISIRAKRTS  +FQF S S DE V+  PS++E       EFS+TRLLAQNVPW+STP
Sbjct: 61  SPLISIRAKRTSTFVFQFASTSQDEAVSS-PSDTE-------EFSQTRLLAQNVPWDSTP 120

Query: 121 EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLN 180
           EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEAL ALNNLESYE+EGRTLRLN
Sbjct: 121 EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALAALNNLESYEFEGRTLRLN 180

Query: 181 YAKIKKEKPYPPPVKPKPVTFNLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPR 240
           YAK+KKEKP PP VKPKPVTFNLFVANLP+DARAKDLKEFFDSGSGNVVSAQ+IFNENPR
Sbjct: 181 YAKLKKEKPSPP-VKPKPVTFNLFVANLPFDARAKDLKEFFDSGSGNVVSAQIIFNENPR 240

Query: 241 RSSGYGFVAFKTKKDAEAAISDFQGKIFMGRTLRVARSKQFAKLPSEDKSQSEVTSTDVS 300
           RSSGYGFVAFKTKKDAEAAIS+FQGK FMGR+LRVARSKQF KLPSE+K QSE  STD  
Sbjct: 241 RSSGYGFVAFKTKKDAEAAISEFQGKTFMGRSLRVARSKQFVKLPSEEKPQSEDASTD-G 300

Query: 301 VELANAAAQV 302
           VELANAAA+V
Sbjct: 301 VELANAAAEV 300

[Close]

BLAST of MC11g0580 vs. ExPASy TrEMBL
Match: A0A6J1FF97 (28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111443545 PE=4 SV=1)

HSP 1 Score: 434 bits (1115), Expect = 7.60e-151
Identity = 235/310 (75.81%), Postives = 264/310 (85.16%), Query Frame = 0


Query: 1   MALLRLPCSSSSSFIRSKQRHPIFLASLSCPQNPSHSIHGDIHLSLS--------TSLTH 60
           MAL+RLPCSSSS F+RS Q++ +F++ LSCPQNPS+S +GDI LSLS        T L H
Sbjct: 1   MALVRLPCSSSSLFLRSNQQNLVFISPLSCPQNPSYSNNGDIKLSLSRSSSSLFSTPLGH 60

Query: 61  HPSISIRAKRTSKSIFQFVSASHDETVARVPSESEGPKIGADEFSRTRLLAQNVPWNSTP 120
           +P  SIRAKRT K +FQ  S S D+ VA   S++E       EFSR RLLAQNVPW+STP
Sbjct: 61  NPLASIRAKRTRKFVFQLASTSQDDAVASSSSDAE-------EFSRNRLLAQNVPWDSTP 120

Query: 121 EDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLN 180
           EDIRSLFEKYGTV+DVELSMYNKIRNRGLAFVTMGSPEEAL A+NNLESYE+ GRTL+LN
Sbjct: 121 EDIRSLFEKYGTVVDVELSMYNKIRNRGLAFVTMGSPEEALAAVNNLESYEFGGRTLKLN 180

Query: 181 YAKIKKEKPYPPPVKPKPVTFNLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPR 240
           YAK+KKEKP PP VKP PVTFNLFVANLP+DARAKDL+EFFDSGSGNVVSAQ+IF+ENPR
Sbjct: 181 YAKVKKEKPSPP-VKPNPVTFNLFVANLPFDARAKDLREFFDSGSGNVVSAQIIFHENPR 240

Query: 241 RSSGYGFVAFKTKKDAEAAISDFQGKIFMGRTLRVARSKQFAKLPSEDKSQSEVTSTDVS 300
           RSSGYGFVAFKTKKDAEAAIS+FQGK FMGR+LRVARSKQF KLPSE+KSQSE TSTD  
Sbjct: 241 RSSGYGFVAFKTKKDAEAAISEFQGKNFMGRSLRVARSKQFVKLPSEEKSQSEDTSTD-G 300

Query: 301 VELANAAAQV 302
           VELA+AAA+V
Sbjct: 301 VELASAAAEV 301

[Close]

BLAST of MC11g0580 vs. TAIR 10
Match: AT4G09040.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 274.2 bits (700), Expect = 1.2e-73
Identity = 159/308 (51.62%), Postives = 206/308 (66.88%), Query Frame = 0


Query: 1   MALLRLPCSSSSSFIRSKQRHPIFLASLSCPQNPSHSIHGDIH-LSLST----SLTHHPS 60
           MALLRLP  S              L   S  +NP+ ++    H LSLST     L  H +
Sbjct: 1   MALLRLPGISLQ-----------ILGHKSNQKNPNPNVAFTNHSLSLSTPSLCRLHRHAT 60

Query: 61  ISIRAKRTSKSIFQFVSASHDETVAR-VPSESEGPKIGADEFSRTRLLAQNVPWNSTPED 120
                   S+++  + S +  E V     S S  P++  +E S+TRL+AQNVPW STPED
Sbjct: 61  FPDSIPAKSRNLTSYFSTTTQEPVLESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPED 120

Query: 121 IRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLNYA 180
           IRSLFEKYG+V+D+E+SM+ K RNRGL F+ M SPEEA TAL +LES EYEGR L+++YA
Sbjct: 121 IRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYA 180

Query: 181 KIKKEKPYPPPVKPKPV-TFNLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPRR 240
           K KK+K Y P   P PV TFNLFVANL ++ARAK LKEFFD+ +GNVVS +VIF+ENPRR
Sbjct: 181 KTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDADTGNVVSTEVIFHENPRR 240

Query: 241 SSGYGFVAFKTKKDAEAAISDFQGKIFMGRTLRVARSKQFAKL-------PSEDKSQSEV 295
           SSGYGFV+FKTKK AEAA+ +FQGK F+GR +R+A+SKQF KL       P E++++ E 
Sbjct: 241 SSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVKLQAKEGLQPPEEEAEEEP 297

[Close]

BLAST of MC11g0580 vs. TAIR 10
Match: AT4G09040.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 261.5 bits (667), Expect = 8.1e-70
Identity = 131/206 (63.59%), Postives = 165/206 (80.10%), Query Frame = 0


Query: 97  SRTRLLAQNVPWNSTPEDIRSLFEKYGTVLDVELSMYNKIRNRGLAFVTMGSPEEALTAL 156
           S+TRL+AQNVPW STPEDIRSLFEKYG+V+D+E+SM+ K RNRGL F+ M SPEEA TAL
Sbjct: 32  SKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATAL 91

Query: 157 NNLESYEYEGRTLRLNYAKIKKEKPYPPPVKPKPV-TFNLFVANLPYDARAKDLKEFFDS 216
            +LES EYEGR L+++YAK KK+K Y P   P PV TFNLFVANL ++ARAK LKEFFD+
Sbjct: 92  KSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEARAKHLKEFFDA 151

Query: 217 GSGNVVSAQVIFNENPRRSSGYGFVAFKTKKDAEAAISDFQGKIFMGRTLRVARSKQFAK 276
            +GNVVS +VIF+ENPRRSSGYGFV+FKTKK AEAA+ +FQGK F+GR +R+A+SKQF K
Sbjct: 152 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 211

Query: 277 L-------PSEDKSQSEVTSTDVSVE 295
           L       P E++++ E + ++   +
Sbjct: 212 LQAKEGLQPPEEEAEEEPSQSETMTQ 237

[Close]

BLAST of MC11g0580 vs. TAIR 10
Match: AT2G35410.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 125.9 bits (315), Expect = 5.3e-29
Identity = 92/286 (32.17%), Postives = 148/286 (51.75%), Query Frame = 0


Query: 9   SSSSSFIRSKQRHPIFLASLSCPQNPSHSIHGDIHLSLSTSLTHHPSISIRAKRTSKSIF 68
           SSS  ++ SK+   + L +LS              L + ++L+   S+   +  + + + 
Sbjct: 18  SSSKPYLFSKRSSSLKLTALS--------------LRIPSNLSPVFSLRSGSDNSRRLVS 77

Query: 69  QFVSASHDETVA-RVPSESEGPKIGADEFSRTRLLAQNVPWNSTPEDIRSLFEKYGTVLD 128
              S +  ET A    S+ E  +   +   + +L   N+PW+ +  DI  LF + GTV +
Sbjct: 78  VLCSVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSVNDISELFGQCGTVNN 137

Query: 129 VELSMYNKIRNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLNYA-KIKKEKPYPPPV 188
           VE+      +NRG AFVTM S EEA  A++  ++++  GR + +++A + KK  P  P  
Sbjct: 138 VEIIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPND 197

Query: 189 KPKP----VTFNLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPRRSSGYGFVAF 248
            P P        L+V+NL + AR+  L+E F +   N VSA+V+F +   RSSGYGFV+F
Sbjct: 198 LPSPAPGDTRHKLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSF 257

Query: 249 KTKKDAEAAISDFQGKIFMGRTLRVARSKQFAKLPSEDKSQSEVTS 289
            T+++AE AI+   GK  MGR + +  S + A   SED    E  +
Sbjct: 258 ATREEAENAITKLNGKEIMGRPITLKFSLRSAS-ESEDGDSVEANN 288

[Close]

BLAST of MC11g0580 vs. TAIR 10
Match: AT3G52380.1 (chloroplast RNA-binding protein 33 )

HSP 1 Score: 98.6 bits (244), Expect = 9.1e-21
Identity = 69/244 (28.28%), Postives = 129/244 (52.87%), Query Frame = 0


Query: 71  VSASHDETVARVPSESEGPKIGADEFSRTRLLAQNVPWNSTPEDIRSLFEKYGTVLDVEL 130
           V    DE    V  E +  +   +E    RL   N+P+  T  ++  +F + GTV+DV++
Sbjct: 91  VEEEGDEGEEEVEEEKQTTQASGEE---GRLYVGNLPYTITSSELSQIFGEAGTVVDVQI 150

Query: 131 SMYNKI--RNRGLAFVTMGSPEEALTALNNLESYEYEGRTLRLNYAKIKK---EKPYPPP 190
            +Y+K+  R+RG  FVTMGS EEA  A+    S +  GRT+++N+ ++ +    +     
Sbjct: 151 -VYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTK 210

Query: 191 VKPKPVTF-----NLFVANLPYDARAKDLKEFFDSGSGNVVSAQVIFNENPRRSSGYGFV 250
           ++    ++      ++  NL ++  ++ LK+ F    G V+ A+VI+  N  RS G+GF+
Sbjct: 211 IRDNNRSYVDSPHKVYAGNLGWNLTSQGLKDAFGDQPG-VLGAKVIYERNTGRSRGFGFI 270

Query: 251 AFKTKKDAEAAISDFQGKIFMGRTLRV----ARSKQFAKLPSEDKSQSEVTSTDVSVELA 301
           +F++ ++ ++A++   G    GR LR+     R K     PS ++ ++E  S + +  L+
Sbjct: 271 SFESAENVQSALATMNGVEVEGRALRLNLASEREKPTVSPPSVEEGETEEASLESNEVLS 329

[Close]

BLAST of MC11g0580 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-19
Identity = 62/179 (34.64%), Postives = 99/179 (55.31%), Query Frame = 0


Query: 99  TRLLAQNVPWNSTPEDIRSLFEKYGTVLDVELSMYNKI--RNRGLAFVTMGSPEEALTAL 158
           T+L   N+P+N     +  + + +     VE+ +YN+   ++RG AFVTM + E+    +
Sbjct: 85  TKLYFGNLPYNVDSATLAQIIQDFANPELVEV-LYNRDTGQSRGFAFVTMSNVEDCNIII 144

Query: 159 NNLESYEYEGRTLRLNYAKIKKEKPYPPPVKPKPVTFNLFVANLPYDARAKDLKEFFDSG 218
           +NL+  EY GR L++N+A   K KP   P+ P+     LFV NL +   ++ L   F   
Sbjct: 145 DNLDGTEYLGRALKVNFA--DKPKPNKEPLYPE-TEHKLFVGNLSWTVTSESLAGAFRE- 204

Query: 219 SGNVVSAQVIFNENPRRSSGYGFVAFKTKKDAEAAISDFQGKIFMGRTLRV--ARSKQF 274
            G+VV A+V+F+ +  RS GYGFV + +K + E A+    G    GR +RV  A+ K+F
Sbjct: 205 CGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKKF 258

The following BLAST results are available for this feature:

BLAST of MC11g0580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39061	1.3e-19	28.28	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
P19682	2.2e-19	30.58	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19683	3.2e-18	29.77	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q04836	9.2e-18	34.04	31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A...	[more]
P28644	7.8e-17	32.62	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]

BLAST of MC11g0580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159726.1	9.08e-210	100.00	31 kDa ribonucleoprotein, chloroplastic [Momordica charantia]	[more]
XP_038897887.1	2.99e-162	80.65	31 kDa ribonucleoprotein, chloroplastic [Benincasa hispida]	[more]
XP_008466190.1	9.03e-157	78.71	PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Cucumis melo] >KAA0038685.1 ...	[more]
XP_004136268.1	2.49e-156	79.03	28 kDa ribonucleoprotein, chloroplastic [Cucumis sativus] >KGN60238.1 hypothetic...	[more]
XP_023535968.1	1.11e-150	75.81	28 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of MC11g0580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E4S9	4.40e-210	100.00	31 kDa ribonucleoprotein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A5A7TBD1	4.37e-157	78.71	31 kDa ribonucleoprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CS17	4.37e-157	78.71	31 kDa ribonucleoprotein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503681 ...	[more]
A0A0A0LEN0	1.21e-156	79.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889940 PE=4 SV=1	[more]
A0A6J1FF97	7.60e-151	75.81	28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of MC11g0580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G09040.1	1.2e-73	51.62	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G09040.2	8.1e-70	63.59	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G35410.1	5.3e-29	32.17	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G52380.1	9.1e-21	28.28	chloroplast RNA-binding protein 33	[more]
AT1G60000.1	1.3e-19	34.64	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003954	RNA recognition motif domain, eukaryote	SMART	SM00361	rrm2_1	coord: 100..172 e-value: 16.0 score: 1.7 coord: 194..268 e-value: 0.016 score: 24.4
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 194..268 e-value: 3.7E-22 score: 89.6 coord: 100..172 e-value: 3.7E-15 score: 66.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 104..170 e-value: 6.1E-13 score: 48.4 coord: 195..266 e-value: 9.4E-19 score: 67.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 99..176 score: 16.568354
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 193..272 score: 18.239782
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 59..183 e-value: 1.1E-19 score: 72.9
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 184..290 e-value: 3.2E-23 score: 84.3
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 1..296
None	No IPR available	PANTHER	PTHR23003:SF35	OS08G0483200 PROTEIN	coord: 1..296
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 83..182
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 182..276

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g0580.1	MC11g0580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding