MC11g0574 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0574
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	39S ribosomal protein L41-A, mitochondrial
Location	MC11: 4462611 .. 4463257 (-)
RNA-Seq Expression	MC11g0574
Synteny	MC11g0574

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTGGGATTGATATTGGGACTCGGAAGAGCGATGCGGAGGAAGCGTACGTCTTCTCTGGACATTCTTTCGTCGAAACGAGCTCCACGGGATTATTACAAGGGCAAGAACTGCAAGCCTACTGGTTTTCATACGCGCAAAGGTCTGGATTGGTTTCGTCTTGCACAGATTCTAATCTAATTTTAGGTTTTATGATTATGTATTTTCACCGGATCAAGGAAAATGTTGGATGATTTTTCCCAGAATGCGTGTTAAGTATAATGCTTAGTTGATTGCTTTGTCGAAAGTCAATTATATTTTGGTGCCACTGTCATTGAGCGTGAGGAATTTGAAGGAGTTAGTGTCTCTAAGATTCAATGTAATTAGGTGATGATTAGTGAACGAGTTCAGAAGCTAAAAAATGCTTCTAGGAATGGGATGTGATTGATTTTTAGTCTTTGTATGTTTCCTGAACCATTTTCTAACTGTTCCTGACTTCAGTCGAGAATAGGAAACGAAATGAAATATCAGACTGCAAATTGCCGTTTATAACTGTAATTATTGTGTGAGGTTGCTTAAAATGTAAAAAATTTCTTTCAGGTGGATACGTAGTGGTGCCAGAAAAACTGCCTAACTATATCGTTCCTGATTTGACTGATTTCAAG

mRNA sequence

ATGGCGTTGGGATTGATATTGGGACTCGGAAGAGCGATGCGGAGGAAGCGTACGTCTTCTCTGGACATTCTTTCGTCGAAACGAGCTCCACGGGATTATTACAAGGGCAAGAACTGCAAGCCTACTGGTTTTCATACGCGCAAAGGTGGATACGTAGTGGTGCCAGAAAAACTGCCTAACTATATCGTTCCTGATTTGACTGATTTCAAG

Coding sequence (CDS)

ATGGCGTTGGGATTGATATTGGGACTCGGAAGAGCGATGCGGAGGAAGCGTACGTCTTCTCTGGACATTCTTTCGTCGAAACGAGCTCCACGGGATTATTACAAGGGCAAGAACTGCAAGCCTACTGGTTTTCATACGCGCAAAGGTGGATACGTAGTGGTGCCAGAAAAACTGCCTAACTATATCGTTCCTGATTTGACTGATTTCAAG

Protein sequence

MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYIVPDLTDFK

Homology

[Close]

BLAST of MC11g0574 vs. ExPASy Swiss-Prot
Match: Q6DJI4 (39S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-a PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 3.5e-05
Identity = 26/68 (38.24%), Postives = 38/68 (55.88%), Query Frame = 0


Query: 3  LGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYI 62
          +GLI  + R + R      +  +SK+ P  Y KG+  K  G+ T  G +V V E +P ++
Sbjct: 1  MGLISKIARGLVRGADRMAE-CTSKQGPNSYNKGRGAKKIGYLTASGKFVKVREMVPVFV 60

Query: 63 VPDLTDFK 71
          VPDLT FK
Sbjct: 61 VPDLTGFK 67

[Close]

BLAST of MC11g0574 vs. ExPASy Swiss-Prot
Match: Q9CQN7 (39S ribosomal protein L41, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl41 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.6e-05
Identity = 20/46 (43.48%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 25 SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYIVPDLTDFK 71
          +SKR PR + K +  K TG +T    +V + E +P ++VPDLT FK
Sbjct: 22 TSKRGPRTFTKSRGAKKTGIYTSDRKFVQIKEMVPEFVVPDLTGFK 67

[Close]

BLAST of MC11g0574 vs. ExPASy Swiss-Prot
Match: Q5BJX1 (39S ribosomal protein L41, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl41 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 4.6e-05
Identity = 21/46 (45.65%), Postives = 31/46 (67.39%), Query Frame = 0


Query: 25 SSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYIVPDLTDFK 71
          +SKR PR + K +  K TGF+T +  +V + E +P ++VPDLT FK
Sbjct: 22 TSKRGPRTFTKSRGAKKTGFYTNR-KFVQIKEMVPEFVVPDLTGFK 66

[Close]

BLAST of MC11g0574 vs. ExPASy Swiss-Prot
Match: Q6INF3 (39S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-b PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 6.0e-05
Identity = 26/68 (38.24%), Postives = 37/68 (54.41%), Query Frame = 0


Query: 3  LGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYI 62
          +GLI  + R + R      +  +SK  P  Y KG+  K  G+ T  G +V V E +P ++
Sbjct: 1  MGLITKIARGLVRGADRMAE-CTSKLGPNSYNKGRGAKKIGYLTSSGKFVKVREMVPVFV 60

Query: 63 VPDLTDFK 71
          VPDLT FK
Sbjct: 61 VPDLTGFK 67

[Close]

BLAST of MC11g0574 vs. NCBI nr
Match: XP_022143129.1 (39S ribosomal protein L41-A, mitochondrial [Momordica charantia] >XP_022143137.1 39S ribosomal protein L41-A, mitochondrial [Momordica charantia])

HSP 1 Score: 142 bits (359), Expect = 1.79e-42
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YIVPDLTDFK 70
          YIVPDLTDFK
Sbjct: 61 YIVPDLTDFK 70

[Close]

BLAST of MC11g0574 vs. NCBI nr
Match: XP_038897038.1 (39S ribosomal protein L41-A, mitochondrial-like [Benincasa hispida])

HSP 1 Score: 142 bits (358), Expect = 2.54e-42
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YIVPDLTDFK 70
          Y+VPDLTDFK
Sbjct: 61 YVVPDLTDFK 70

[Close]

BLAST of MC11g0574 vs. NCBI nr
Match: KAA0058778.1 (39S ribosomal protein L41-A [Cucumis melo var. makuwa] >TYK10572.1 39S ribosomal protein L41-A [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (350), Expect = 2.29e-41
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGR MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YIVPDLTDFK 70
          Y+VPDL+DFK
Sbjct: 61 YVVPDLSDFK 70

[Close]

BLAST of MC11g0574 vs. NCBI nr
Match: XP_021677691.1 (39S ribosomal protein L41-A, mitochondrial-like [Hevea brasiliensis])

HSP 1 Score: 139 bits (351), Expect = 2.88e-41
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          M LGLILG+GRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPN
Sbjct: 1  MPLGLILGIGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVIVPEKLPN 60

Query: 61 YIVPDLTDFK 70
          YIVPDLTDFK
Sbjct: 61 YIVPDLTDFK 70

[Close]

BLAST of MC11g0574 vs. NCBI nr
Match: XP_002513969.1 (39S ribosomal protein L41-A, mitochondrial [Ricinus communis] >EEF48552.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 139 bits (350), Expect = 3.86e-41
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILG+GRA RRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPN
Sbjct: 1  MALGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVIVPEKLPN 60

Query: 61 YIVPDLTDFK 70
          Y+VPDLTDFK
Sbjct: 61 YVVPDLTDFK 70

[Close]

BLAST of MC11g0574 vs. ExPASy TrEMBL
Match: A0A6J1CNE9 (39S ribosomal protein L41-A, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013068 PE=3 SV=1)

HSP 1 Score: 142 bits (359), Expect = 8.66e-43
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YIVPDLTDFK 70
          YIVPDLTDFK
Sbjct: 61 YIVPDLTDFK 70

[Close]

BLAST of MC11g0574 vs. ExPASy TrEMBL
Match: A0A5A7UUA4 (39S ribosomal protein L41-A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002260 PE=3 SV=1)

HSP 1 Score: 139 bits (350), Expect = 1.11e-41
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGR MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YIVPDLTDFK 70
          Y+VPDL+DFK
Sbjct: 61 YVVPDLSDFK 70

[Close]

BLAST of MC11g0574 vs. ExPASy TrEMBL
Match: B9RJQ0 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1037420 PE=3 SV=1)

HSP 1 Score: 139 bits (350), Expect = 1.87e-41
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILG+GRA RRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPN
Sbjct: 1  MALGLILGIGRAFRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVIVPEKLPN 60

Query: 61 YIVPDLTDFK 70
          Y+VPDLTDFK
Sbjct: 61 YVVPDLTDFK 70

[Close]

BLAST of MC11g0574 vs. ExPASy TrEMBL
Match: A0A2C9U139 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G063900 PE=3 SV=1)

HSP 1 Score: 139 bits (350), Expect = 1.98e-41
Identity = 66/70 (94.29%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          M LGLILG+GRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYV+VPEKLPN
Sbjct: 1  MPLGLILGIGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVIVPEKLPN 60

Query: 61 YIVPDLTDFK 70
          Y+VPDLTDFK
Sbjct: 61 YVVPDLTDFK 70

[Close]

BLAST of MC11g0574 vs. ExPASy TrEMBL
Match: A0A0A0KBX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433300 PE=3 SV=1)

HSP 1 Score: 139 bits (350), Expect = 2.04e-41
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
          MALGLILGLGR MRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN
Sbjct: 1  MALGLILGLGRVMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60

Query: 61 YIVPDLTDFK 70
          Y+VPDL+DFK
Sbjct: 61 YVVPDLSDFK 70

[Close]

BLAST of MC11g0574 vs. TAIR 10
Match: AT5G39800.1 (Mitochondrial ribosomal protein L27 )

HSP 1 Score: 124.4 bits (311), Expect = 3.6e-29
Identity = 55/67 (82.09%), Postives = 63/67 (94.03%), Query Frame = 0


Query: 4  GLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYIV 63
          GL++G+GR+ RRKR+SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLPNY+V
Sbjct: 6  GLLMGIGRSFRRKRSSSLDILSPKRAPRDFYKGKNCKPTGFHTRKGGYVVQPDKLPNYVV 65

Query: 64 PDLTDFK 71
          PDLT FK
Sbjct: 66 PDLTGFK 72

[Close]

BLAST of MC11g0574 vs. TAIR 10
Match: AT5G40080.1 (Mitochondrial ribosomal protein L27 )

HSP 1 Score: 124.0 bits (310), Expect = 4.7e-29
Identity = 55/67 (82.09%), Postives = 62/67 (92.54%), Query Frame = 0


Query: 4  GLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPNYIV 63
          GL++G+GR+ RRKR SSLDILS KRAPRD+YKGKNCKPTGFHTRKGGYVV P+KLPNY+V
Sbjct: 6  GLLMGIGRSFRRKRASSLDILSPKRAPRDFYKGKNCKPTGFHTRKGGYVVQPDKLPNYVV 65

Query: 64 PDLTDFK 71
          PDLT FK
Sbjct: 66 PDLTGFK 72

[Close]

BLAST of MC11g0574 vs. TAIR 10
Match: AT4G09012.1 (Mitochondrial ribosomal protein L27 )

HSP 1 Score: 116.3 bits (290), Expect = 9.8e-27
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1   MALGLILGLGRAMRRKRTSSLDILSSKRAPRDYYKGKNCKPTGFHTRKGGYVVVPEKLPN 60
           M LGL+ G+GR  RRKR SSLDILS KRAPRD+YKGKNCKP GFHTRK GYVV P+KLPN
Sbjct: 75  MTLGLLFGIGRTFRRKRASSLDILSPKRAPRDFYKGKNCKPPGFHTRK-GYVVQPDKLPN 134

Query: 61  YIVPDLTDFK 71
           Y+VPDLT FK
Sbjct: 135 YVVPDLTGFK 143

The following BLAST results are available for this feature:

BLAST of MC11g0574 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DJI4	3.5e-05	38.24	39S ribosomal protein L41-A, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-a...	[more]
Q9CQN7	4.6e-05	43.48	39S ribosomal protein L41, mitochondrial OS=Mus musculus OX=10090 GN=Mrpl41 PE=1...	[more]
Q5BJX1	4.6e-05	45.65	39S ribosomal protein L41, mitochondrial OS=Rattus norvegicus OX=10116 GN=Mrpl41...	[more]
Q6INF3	6.0e-05	38.24	39S ribosomal protein L41-B, mitochondrial OS=Xenopus laevis OX=8355 GN=mrpl41-b...	[more]

BLAST of MC11g0574 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143129.1	1.79e-42	100.00	39S ribosomal protein L41-A, mitochondrial [Momordica charantia] >XP_022143137.1...	[more]
XP_038897038.1	2.54e-42	98.57	39S ribosomal protein L41-A, mitochondrial-like [Benincasa hispida]	[more]
KAA0058778.1	2.29e-41	95.71	39S ribosomal protein L41-A [Cucumis melo var. makuwa] >TYK10572.1 39S ribosomal...	[more]
XP_021677691.1	2.88e-41	95.71	39S ribosomal protein L41-A, mitochondrial-like [Hevea brasiliensis]	[more]
XP_002513969.1	3.86e-41	94.29	39S ribosomal protein L41-A, mitochondrial [Ricinus communis] >EEF48552.1 conser...	[more]

BLAST of MC11g0574 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNE9	8.66e-43	100.00	39S ribosomal protein L41-A, mitochondrial OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A5A7UUA4	1.11e-41	95.71	39S ribosomal protein L41-A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
B9RJQ0	1.87e-41	94.29	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1037420 PE=3 SV=1	[more]
A0A2C9U139	1.98e-41	94.29	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G063900 PE=3 SV=...	[more]
A0A0A0KBX4	2.04e-41	95.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433300 PE=3 SV=1	[more]

BLAST of MC11g0574 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G39800.1	3.6e-29	82.09	Mitochondrial ribosomal protein L27	[more]
AT5G40080.1	4.7e-29	82.09	Mitochondrial ribosomal protein L27	[more]
AT4G09012.1	9.8e-27	78.57	Mitochondrial ribosomal protein L27	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019189	Ribosomal protein L27/L41, mitochondrial	PFAM	PF09809	MRP-L27	coord: 24..70 e-value: 5.3E-12 score: 45.6
IPR019189	Ribosomal protein L27/L41, mitochondrial	PANTHER	PTHR21338	MITOCHONDRIAL RIBOSOMAL PROTEIN L41	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g0574.1	MC11g0574.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005762	mitochondrial large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome