MC11g0572 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0572
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	pre-rRNA-processing protein TSR2 homolog
Location	MC11: 4448649 .. 4453783 (-)
RNA-Seq Expression	MC11g0572
Synteny	MC11g0572

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCAGTCTTATGAAGCAAAAAATAAAAAACGAAATATTTATTAAGGCGGTACAAAAAAACTCGATAATCCAAAGAAATCGAGCAATCCTTGGGTCATAATTTTGAGAACCGACCGGTTCGCTTTGCATATTCAGGAAACAAAATAATTGGTTCAACCGAACCCAACCGGCCCACTATATATATTTTTTTTGTAGGATCTGCCGCCGCTCATTTTTCAGTCTCTCCCTCTCTCAGTCTCACGGTCTCATTCTCATCTCTCTCACGATCTCGCCCGCCGTCCGTTCGTCGCCCTTCGCCGTCGACGCCGTCCGTCGTCGTTCGCCACACGAGGTACTTGTTTATTTGAGAAAGAATTATCTAAATTCCAAAAGAAGTGCGTCTTTTGGTCTCAAAGATAGCAGGATTGATATGCTGTGATTGCTTGATTTTAGGAGCAATTTGAACCTTATAAATCGCGAGCAATTTGAACCCAGTTTTAAAAAAAAAATGGTAAAGGAAAAAAGGGTATTGCTCTAATTAACCTACTCGCACTTTGATAATTAGGGTTTTACGCTTGGAGGCTAAGAGATGGAAGACCCTGCAAATCGTCGTCTCCCAGCAGATGCTTTTCCATTATTCCAGGGAGGTATCAAGTGTGTATTATCTCGTTGGTCAGCTCTTCAGTTGGCGGTGGAAAATGAATGGGGTGGTCGTGACTCGCTTCGTAAATCGGAACTATTGTGCTCCGATATTTTCACGTGGTTTACTCAAAACAAAGGTAATTTTGCTCCCATCCCCTTGGATGTCCTTGGTACCTATTTTCATGCATTGTTCCTCAGCTCGTATTCTGTTGTTTGATCAGTTTCGCTGGCCCAGTATTCTGTAACTTTTCAAACGATTACATGTTTCTTTGGTGAGAAGTAGTTTCTATAGACATGGGAAATGGAAATCATCAAATGGCGATATTACTTGTATGATTTTTCTTCAAATAACAATTGTATAATTTCTGCTGTCATGTACTGGCATGTTAATTTCTTTCAGAAATATAAGTTCTAGATCGTATTTTGAATCTTTGATATTCACTTTGGTCAATCAATGCTCTGAATTTTCTTCCTAGAAGAAATTAACATACTCTTTAGTTATTTTGAATTTTTTTGGATGATGGTTGATTCGTAGTGGAACTTGATACCATGTTAGCATGTTGTTTATAGTTTTATGTCGGAATAATTCCTATGATTATCTTGATCTGAGAAAGTTATAATTATCTTGCAGAGACCCTTTATGTCGATGATTTAGAAATTATTCTCAACGAAGCTATGCTTTCGTTGAATACTGAGGTTGATGATGGTAGCATCGAGGAGGTACATGCACATTTATATACCTTTCAATCCTTGTTAGTCTTTGACGAAATCCTGTTTTCTCATAGCTAAGGGGGTCCTTTTTTGTTCCACATGATGAGGTAGCATGCTGTTATTTAAGACTTAGTTAATGCAGATATTTGTGTGAACTGGTTAGTTTTGAAATTCATCCTCTTAATCAACTAAATTTATTGGATATTGTGTTTACTAATGACTAACTAGTGTTGATGGATGGTTTTTCTACCCAATCCGACTTCTGATGGTTCTCAATCTGATTTCTATAAATGAAGTTCTGTCAGGGAAATTAAGAAAAAATTGCTTCTACCTCTTAGTCTTGTTGGTTGGAATAGTTTGAGATGCTGTTGAATATTTACTTCCTGTCTATAACTTTTAGTTTTAGCTGTTTATCGTTGTGTCTCTGACTTTAGATGATAGATGCTTGGAAGACGATGGTGATTGTATAAATACCTTCCTAGTGGAACCTGATGTAGTTCATTAGTTTTCAAATCTATTTACTTTTACATCCACGTTGAAGGGCAATTTCGTTCCTTTGTAGTCATTTTCACCTCTTTGTAGGAGGTAACTTAAAAAGTTACATACTAATAAACTTGTCCAATCACATTTTGTACCAGCACCACACTCATTTTTTTGTTTTCCTCCTCTTTTATTAGAATACTTGGTTGAAGTAGAAGAATAATATACAAATAGAGAAAACGTGGATGTGATAATAAATGTTGAGTGAGAATTGAGATCGTCAAATTTATTATCATGTATTATTATTACCTCTGAAAAGTGATATTTGTTACCCTGATGTTGCTGATAGGAATCACCCTTAGGGTAATAAAGGGATATTATTAGAGTATCGAGGGTACCTTAGTAATTAGATAGGAAAGTGGTTAGGGAGTGTTGTTATAAATAGAATGGAGGTGCAAGGATGAAGGTATCCAATGGAGTGAGTATGGTTTAGGCTTGAGTAAGAATACTCAAGAGAGGAGGGGAGGGTCCAAGTACCTCAAATTACTTGGTAGTTCTAGTATTTCTTGTTTGGGTTCTAACAGTGGTATCAGAGCAGTTCGTTTCTGGCCATGGAGGTTGATGATGAGAAATCATCCCTACTTGAGCTCTGTTTCTGGCCATGGAGGTTGATGATGAGAAATCATCCCTACTTGAAGAGTTGCACCGAATCTTTAGGCACATGGACGAAAAGTTAGAATCCATGATGAATATAATGGACAAGGGGTGCAAAGCCATACGTGAAGCGTTTGAATCTCCATTGAAAAACAGAGAGGAAGATGCTTGAGTGGGAACAAAAGTACAGATTACACCCGTGAAAATTATTCCAGAAATACCACATAGAGATTGGAAGAAGAATCGTGGTATGAGAAATGATGATCAAACGTTACCGGGATCAATCATACGAAGAAAAAAAAAGGTCAGATCGTTAAAGAAAGTGTACTTGTACTTGCGAAAGAATGCCTGCAAAAGGAAGAAGAGAGAACGAACTGATCGGCTGCGATTGAAGGAAGGTCGCTGGAATTCGAAGATCGAGCATGAGAAGACTTGGACGACGTCAGATGAGGGAAAGACTAGAGTTCCGAAGAAAAATCGAGGGCCATTATCGATTTTATGGCGGAAGGTGATGAATCGAAGGAGAGGAAGATGCTGTAGAAGACGAGGCCTCAACGGTCGCAAAGCTCGGGAGAAGGCGGATTATCATGAAGAAGAGGGAAAGAAAGCAAGAAATATGGCCGACGGAGTCCATCGCCGACGACAATTGCGGATGTGGTCGGAGAAGGAGATGTGGTGGAGGCATCGATGGAAGCTTCGTGAAATGCCAGAAAGCGTTACATGGGTCGGATCACAGTACGGGTCACGAAAAAAAGGAGGCAGGAGGATCCCTAATTACGTGGATGCTAAAATTGGAGAGGATTCTAGAAGAAAGTGGGATCAAGGGGTTGAAAATGATGGAGTATTTGGGCTACGTGGGTCGGATCTGAATGCAGATGCAGCTATTGAGGCCCATTTATTTATAAAGGCCAAAATAGTGGATTTGGCAAATGGGTTTTGGGTCGAGGTGTCATTGGTTCTAAACCCGTAAATTAAATCGAATGGGCCACAACCTACCCGCGTACGAGACGTAGCCCTAGCCGCCACACTTTACTATTTTCATCCACGCCCAATGTACGACGTCGTTCCACCACCGACGACACCCAGTCACTGTTTTCCTCCGCCGTCGCTCTACCCACCGATGTTCGCCGACCATCAGCCATCGCCTGCTCCGACCGGCACCCATGGCATCTGCACTACGCCGATCTGTCATCGCCGACAGCCGGCCACACACCACCGCCGATCGCCAGCCACCGCAGCCCCTGACTGTCAGATACCGTGCACCGGTGGAGATGTCACCATCTTCCTTAGCCCGCATCGCCAAAGCTTCAACTGCCGGCGTCCCCACACATCGACATACCACCAACGCTTCATCATAGTAGCCGCAGAACCAACTAGGGATTTCTTTTGCAGTTTTTTGTTGAAGGCTGAATCCCAATTTTTGTGGTTGAAAAAAAAAAGTTTTTGTTTAGCCACACCTTGAGGGCAAGGTGTGTTTTAAGGGGCGGGTAATGATAGGAATCACCCTTAGGGTAATAAAGGGATATTATTAGAGTATCGAGGGTACCTTAGTAATTAGATAGGAAAGTGGTTAGGGAGTGTTGTTATAAATAGAATGGAGGTGCAAGGATGAAGGTATCCAATGGAGTGAGTATGGTTTAGGCTTGAGTAAGAATACTCAAGAGAGGAGAGGAGGGTCCAAGTACCTCAAATTACTTGGTAGTTCTAGTATTTCTTGTTTGGGTTCTAACAGTTGCTCCTTCAAGAATTGAGATTTTTTTATTAATGGGTTTTTGTTGCTTGTGTTTCTTATCCAACGATGCAGGTAGCTGACAAAATGATTGATATGTATGAGGATTGTTTGGATGGTAACTATGAATCTATTGAAAATCTAATGCAATCCCAACCACCACGGGTTGCTCATTCTCATGTTAGTCAGGTAACATGAAGTATTTCCTAAACTGTTCTTTTGAAAGTTCCACTTTAAAGTAAGAATATATATTAAAAGGAACTCGCTATCCTATAGTGTGATTTTGGGATTACAAATTAGCTCTGCTGATTCTCATTCCTTGGTCTACACTGCCATAACTTATAGCCAAAAAAACTTGCTGAAGGAGTAATAGTGCCACCTTTGCAGTTATAGTGTATCAGCTTATGGATCATTATTGCATTTTTTCAGAAAATATTTCATTCATGGTGTAAAACAAACATTCTCTCGTTATAAAGCATATTCTAATCTTGATTGTGATGAATATTAAGGTTGTGAGTGACGATGAAGAAGAGGAAGACGATGATGACGATGCTAAAAATGCAAGAGATGCCATGAGGAATGATGGTTCGTCAGATATGATGGTGGATGCCATAGAATACCAATCTAATTCTACTTCACAACCCAAGCGTGTCTATCAGCCCAACCCAGAGGCTACAGCTGAAGCTGAAGATGGATGGGTTCAAGTCACGTCAAGGAGAAATAGGGGTAATAGAAATTAGTTCCAACTTTTAAATGTCTGCTATTAATCTATTTTTAATTATACCAAATTAATCCCTTTACTCTTTTCTTAATTCCTAGTACTTGGCAGTAGCCATCAATTTTGGTAGGTGTGAAGATATATAAAGTACCAGTATTCAGCTTGTGTTTGTTGAGATCCTAGGGGCCAGTATACCATCATTTTTTTAAGTGTCAACTTTTTT

mRNA sequence

TCCAGTCTTATGAAGCAAAAAATAAAAAACGAAATATTTATTAAGGCGGTACAAAAAAACTCGATAATCCAAAGAAATCGAGCAATCCTTGGGTCATAATTTTGAGAACCGACCGGTTCGCTTTGCATATTCAGGAAACAAAATAATTGGTTCAACCGAACCCAACCGGCCCACTATATATATTTTTTTTGTAGGATCTGCCGCCGCTCATTTTTCAGTCTCTCCCTCTCTCAGTCTCACGGTCTCATTCTCATCTCTCTCACGATCTCGCCCGCCGTCCGTTCGTCGCCCTTCGCCGTCGACGCCGTCCGTCGTCGTTCGCCACACGAGGGTTTTACGCTTGGAGGCTAAGAGATGGAAGACCCTGCAAATCGTCGTCTCCCAGCAGATGCTTTTCCATTATTCCAGGGAGGTATCAAGTGTGTATTATCTCGTTGGTCAGCTCTTCAGTTGGCGGTGGAAAATGAATGGGGTGGTCGTGACTCGCTTCGTAAATCGGAACTATTGTGCTCCGATATTTTCACGTGGTTTACTCAAAACAAAGAGACCCTTTATGTCGATGATTTAGAAATTATTCTCAACGAAGCTATGCTTTCGTTGAATACTGAGGTTGATGATGGTAGCATCGAGGAGGTAGCTGACAAAATGATTGATATGTATGAGGATTGTTTGGATGGTAACTATGAATCTATTGAAAATCTAATGCAATCCCAACCACCACGGGTTGCTCATTCTCATGTTAGTCAGGTTGTGAGTGACGATGAAGAAGAGGAAGACGATGATGACGATGCTAAAAATGCAAGAGATGCCATGAGGAATGATGGTTCGTCAGATATGATGGTGGATGCCATAGAATACCAATCTAATTCTACTTCACAACCCAAGCGTGTCTATCAGCCCAACCCAGAGGCTACAGCTGAAGCTGAAGATGGATGGGTTCAAGTCACGTCAAGGAGAAATAGGGGTAATAGAAATTAGTTCCAACTTTTAAATGTCTGCTATTAATCTATTTTTAATTATACCAAATTAATCCCTTTACTCTTTTCTTAATTCCTAGTACTTGGCAGTAGCCATCAATTTTGGTAGGTGTGAAGATATATAAAGTACCAGTATTCAGCTTGTGTTTGTTGAGATCCTAGGGGCCAGTATACCATCATTTTTTTAAGTGTCAACTTTTTT

Coding sequence (CDS)

ATGGAAGACCCTGCAAATCGTCGTCTCCCAGCAGATGCTTTTCCATTATTCCAGGGAGGTATCAAGTGTGTATTATCTCGTTGGTCAGCTCTTCAGTTGGCGGTGGAAAATGAATGGGGTGGTCGTGACTCGCTTCGTAAATCGGAACTATTGTGCTCCGATATTTTCACGTGGTTTACTCAAAACAAAGAGACCCTTTATGTCGATGATTTAGAAATTATTCTCAACGAAGCTATGCTTTCGTTGAATACTGAGGTTGATGATGGTAGCATCGAGGAGGTAGCTGACAAAATGATTGATATGTATGAGGATTGTTTGGATGGTAACTATGAATCTATTGAAAATCTAATGCAATCCCAACCACCACGGGTTGCTCATTCTCATGTTAGTCAGGTTGTGAGTGACGATGAAGAAGAGGAAGACGATGATGACGATGCTAAAAATGCAAGAGATGCCATGAGGAATGATGGTTCGTCAGATATGATGGTGGATGCCATAGAATACCAATCTAATTCTACTTCACAACCCAAGCGTGTCTATCAGCCCAACCCAGAGGCTACAGCTGAAGCTGAAGATGGATGGGTTCAAGTCACGTCAAGGAGAAATAGGGGTAATAGAAATTAG

Protein sequence

MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFTQNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQPPRVAHSHVSQVVSDDEEEEDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVYQPNPEATAEAEDGWVQVTSRRNRGNRN

Homology

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BLAST of MC11g0572 vs. ExPASy Swiss-Prot
Match: Q06672 (Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TSR2 PE=1 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 3.7e-10
Identity = 42/151 (27.81%), Postives = 80/151 (52.98%), Query Frame = 0


Query: 17  FQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFTQNKETLYVDDLEIILN 76
           F+ G+  V+ +W AL +AVEN WGG DS  K + +   +   F +N++ +    +E  L 
Sbjct: 32  FELGVSMVIYKWDALDVAVENSWGGPDSAEKRDWITGIVVDLF-KNEKVVDAALIEETLL 91

Query: 77  EAML-SLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQPPRVAHSHVSQVVSD 136
            AM+    T V+D S   +A ++I++Y DC + NY  +E L      +       +VV  
Sbjct: 92  YAMIDEFETNVEDDSALPIAVEVINIYNDCFNLNYNKVEKLYLEWQEKQRTKKSKRVVHI 151

Query: 137 DEEEEDDDDDAKNARDAMRNDGSSDMMVDAI 167
           + ++++DD+D ++  D   ++   +++ D +
Sbjct: 152 EGDDDEDDEDVEDYDDEDEDEEMDEVVPDLV 181

[Close]

BLAST of MC11g0572 vs. ExPASy Swiss-Prot
Match: Q3KRG3 (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-09
Identity = 47/187 (25.13%), Postives = 86/187 (45.99%), Query Frame = 0


Query: 16  LFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFTQNKETLYVDDLEIIL 75
           +F   ++ VL  W  LQ+AV+N +GG  S +K+E +   +  +FT N + L  D++E  +
Sbjct: 11  VFSEAVRAVLETWPVLQIAVDNGFGGAFSQQKAEWMVDALQQYFTDNGD-LQPDEVEDFI 70

Query: 76  NEAMLS-LNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQPPRVAHSHVSQVVS 135
           +E M +  +T VDDGS+ +VA ++  M++ C  G    +   +     +   S  ++   
Sbjct: 71  SELMNNEFDTVVDDGSLPQVAQQVCGMFQQCEQGRLAEVREQILKLNQKKTSSGRAKATP 130

Query: 136 DDEEEEDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVYQPNPEATAEAEDGW 195
               ++DDDDD + A D       + +   A+                +     E +DGW
Sbjct: 131 AQTPQDDDDDDEEEAMDCEGGSAGASVSSTAVN---------------DLHHEEEEDDGW 181

Query: 196 VQVTSRR 202
             V  ++
Sbjct: 191 TVVRRKK 181

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BLAST of MC11g0572 vs. ExPASy Swiss-Prot
Match: Q3KPN2 (Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis OX=8355 GN=tsr2 PE=2 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 3.1e-09
Identity = 53/192 (27.60%), Postives = 89/192 (46.35%), Query Frame = 0


Query: 12  DAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFTQNKETLYVDDL 71
           D+  LF+   K VL  W  LQ+AVEN +GG  S  K+E +   I  +F+ N +    +  
Sbjct: 7   DSRGLFREATKAVLGSWPVLQIAVENGFGGSHSQEKAEWMVGAIDQYFSSNADLEQYEVE 66

Query: 72  EIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQ--SQPPRVAHSHV 131
           + I+       +T V+DGS   VA ++  ++  C  G   +++  +   +Q      + V
Sbjct: 67  DSIMGMMNDEFDTIVEDGSQALVAQQLCVLFSQCRQGETAAVQAKIAQLAQKKYDVRAKV 126

Query: 132 SQVVSDDEEEEDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVYQPNPEATAE 191
            +V   D+EEE  DD+ + A D     GSS     ++      +S PK+  +P       
Sbjct: 127 QEVTPSDDEEESSDDE-EEAMDCENTPGSSS--AASLSGALGPSSAPKKEEEPE------ 186

Query: 192 AEDGWVQVTSRR 202
            +DGW  V  ++
Sbjct: 187 -DDGWTVVRRKK 188

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BLAST of MC11g0572 vs. ExPASy Swiss-Prot
Match: Q3T090 (Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.5e-08
Identity = 53/195 (27.18%), Postives = 95/195 (48.72%), Query Frame = 0


Query: 12  DAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFTQNKETLYVDDL 71
           D+  LF   ++  L  W ALQ+AVEN +GG  S  K+E L   +  +F +N + L +D++
Sbjct: 7   DSRALFGAAVRAALEAWPALQIAVENGFGGVYSQEKAEWLGGAVEEYFFRNAD-LELDEV 66

Query: 72  EIILNEAMLS-LNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQPPRVAHSHVS 131
           E  L E M++  +T V+DGS+ +V+ ++  M+     G+  +++ +      R      +
Sbjct: 67  EDFLGELMMNEFDTVVEDGSLPQVSQQLQTMFHHFQKGDRAALKEMASLITQRKCKVRAT 126

Query: 132 QVVSDDEEEEDDD-DDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVYQPNPEATAE 191
            + +  E +EDDD +  +    A  NDG++    D +  Q   +        P+ +   E
Sbjct: 127 ALPTAGETDEDDDANSVEEMEVAATNDGAA---TDGVCPQPEPSG-------PDSQTIKE 186

Query: 192 ---AEDGWVQVTSRR 202
               EDGW  V  ++
Sbjct: 187 EDIVEDGWTIVRRKK 190

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BLAST of MC11g0572 vs. ExPASy Swiss-Prot
Match: Q969E8 (Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-07
Identity = 52/196 (26.53%), Postives = 94/196 (47.96%), Query Frame = 0


Query: 12  DAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFTQNKETLYVDDL 71
           DA  LF+ G+   L  W ALQ+AVEN +GG  S  K++ L   +  +F +N + L +D++
Sbjct: 7   DARALFRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNAD-LELDEV 66

Query: 72  EIILNEAMLS-LNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQ--SQPPRVAHSH 131
           E  L E + +  +T V+DGS+ +V+ ++  M+     G+  ++  +    +Q      + 
Sbjct: 67  EDFLGELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALREMASCITQRKCKVTAT 126

Query: 132 VSQVVSDDEEEEDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVYQPNPEATA 191
             +   + +E+EDD D  +       NDG++    D +  Q   +        P+ +   
Sbjct: 127 ALKTARETDEDEDDVDSVEEMEVTATNDGAA---TDGVCPQPEPS-------DPDAQTIK 186

Query: 192 E---AEDGWVQVTSRR 202
           E    EDGW  V  ++
Sbjct: 187 EEDIVEDGWTIVRRKK 191

[Close]

BLAST of MC11g0572 vs. NCBI nr
Match: XP_022137141.1 (pre-rRNA-processing protein TSR2 homolog [Momordica charantia])

HSP 1 Score: 406 bits (1044), Expect = 8.03e-143
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT
Sbjct: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ
Sbjct: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120

Query: 121 PPRVAHSHVSQVVSDDEEEEDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVY 180
           PPRVAHSHVSQVVSDDEEEEDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVY
Sbjct: 121 PPRVAHSHVSQVVSDDEEEEDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVY 180

Query: 181 QPNPEATAEAEDGWVQVTSRRNRGNRN 207
           QPNPEATAEAEDGWVQVTSRRNRGNRN
Sbjct: 181 QPNPEATAEAEDGWVQVTSRRNRGNRN 207

[Close]

BLAST of MC11g0572 vs. NCBI nr
Match: XP_023524387.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278 bits (711), Expect = 3.53e-92
Identity = 152/208 (73.08%), Postives = 168/208 (80.77%), Query Frame = 0


Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           ME   NR LPADAFPLFQ GI  VLSRWSALQLAV+NEWGGRDS RK ELLCSDIFTWFT
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKETLY+DDLE+IL+E MLSLNT+VDDGSIEEVA+K+I M+E+C+DGN+ SIE L QS 
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 120

Query: 121 PPRVAHSHVSQVVSDDEEEEDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVY 180
             R AHSHVSQ +SDDEEEEDDDDD  N  D MRN    DMMVDAI+ Q     QP+ V 
Sbjct: 121 LLRGAHSHVSQAMSDDEEEEDDDDDGGNGSDGMRN----DMMVDAIQQQQQ---QPRAVN 180

Query: 181 QPNPEATAEAEDGWVQVTSRRN-RGNRN 207
           QP PEA+A AEDGWVQVTSRR+ RG RN
Sbjct: 181 QPRPEASAPAEDGWVQVTSRRSSRGTRN 201

[Close]

BLAST of MC11g0572 vs. NCBI nr
Match: XP_022940503.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata])

HSP 1 Score: 271 bits (692), Expect = 2.94e-89
Identity = 152/211 (72.04%), Postives = 169/211 (80.09%), Query Frame = 0


Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           M+   NR LPADAFPLFQ GI  VLSRWSALQLAV+NEWGGRDS RK ELLCSDIFTWFT
Sbjct: 1   MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKETLY+DDLE+IL+E MLSLNT+VDDGSIEEVA+K+I M+E+C+DGN+ SIE L QS 
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 120

Query: 121 PPRVAHSHVSQVVSDDEEEE--DDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKR 180
            PR AHSHVSQ +SDDEEEE  DDDDD  N  D MRN    DMMVDAI+ Q     QP+ 
Sbjct: 121 LPRGAHSHVSQAMSDDEEEEEEDDDDDGGNGGDGMRN----DMMVDAIQQQQ----QPRA 180

Query: 181 VYQPN-PEATAEAEDGWVQVTSRRN-RGNRN 207
           V QP  PEA+A AEDGWVQVTSRR+ RG RN
Sbjct: 181 VNQPRRPEASAPAEDGWVQVTSRRSSRGTRN 203

[Close]

BLAST of MC11g0572 vs. NCBI nr
Match: XP_022982103.1 (pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima])

HSP 1 Score: 265 bits (676), Expect = 8.26e-87
Identity = 148/213 (69.48%), Postives = 166/213 (77.93%), Query Frame = 0


Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           ME   NR LPADAFPLFQ GI  VLSRWSALQLAV+NEWGGRDS RK ELLCSDIFTWFT
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKETLY+DDLE+IL+E MLSLNT+VDDGSIEEVA+K+I M+E+C+DGN+ SI  L QS 
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIGRLRQSP 120

Query: 121 PPRVAHSHVSQVVSDDEEEE-----DDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQ 180
            PR AHSHVSQ +SD+EEEE     DDD D  N  D MRN    DMMVDAI+ Q  + +Q
Sbjct: 121 LPRGAHSHVSQAMSDEEEEEEEDDDDDDGDVGNGSDGMRN----DMMVDAIQQQPRAVNQ 180

Query: 181 PKRVYQPNPEATAEAEDGWVQVTSRRN-RGNRN 207
                QP PEA+A AEDGWVQVTSRR+ RG RN
Sbjct: 181 -----QPRPEASAPAEDGWVQVTSRRSSRGTRN 204

[Close]

BLAST of MC11g0572 vs. NCBI nr
Match: KAG6608259.1 (Pre-rRNA-processing protein TSR2-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 266 bits (679), Expect = 1.44e-86
Identity = 151/212 (71.23%), Postives = 169/212 (79.72%), Query Frame = 0


Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           M+   NR LPADAFPLFQ GI  VLSRWSALQLAV+NEWGGRDS RK ELLCSDIFTWFT
Sbjct: 47  MDGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 106

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKETLY+DDLE+IL+E MLSLNT+VDDGSIEEVA+K+I M+E+C+DGN+ SIE L QS 
Sbjct: 107 QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 166

Query: 121 PPRV-AHSHVSQVVSDDEEEE--DDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPK 180
            PR  AHSHVSQ +SDDEEEE  DDDDD  N  D MRN    DMMVDAI+ Q     QP+
Sbjct: 167 LPRGGAHSHVSQAMSDDEEEEEDDDDDDGGNGSDGMRN----DMMVDAIQQQQQQ--QPR 226

Query: 181 RVYQPN-PEATAEAEDGWVQVTSRRN-RGNRN 207
            V QP  PEA++ AEDGWVQVTSRR+ RG RN
Sbjct: 227 AVNQPRRPEASSPAEDGWVQVTSRRSSRGTRN 252

[Close]

BLAST of MC11g0572 vs. ExPASy TrEMBL
Match: A0A6J1C5N0 (pre-rRNA-processing protein TSR2 homolog OS=Momordica charantia OX=3673 GN=LOC111008685 PE=3 SV=1)

HSP 1 Score: 406 bits (1044), Expect = 3.89e-143
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT
Sbjct: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ
Sbjct: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120

Query: 121 PPRVAHSHVSQVVSDDEEEEDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVY 180
           PPRVAHSHVSQVVSDDEEEEDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVY
Sbjct: 121 PPRVAHSHVSQVVSDDEEEEDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVY 180

Query: 181 QPNPEATAEAEDGWVQVTSRRNRGNRN 207
           QPNPEATAEAEDGWVQVTSRRNRGNRN
Sbjct: 181 QPNPEATAEAEDGWVQVTSRRNRGNRN 207

[Close]

BLAST of MC11g0572 vs. ExPASy TrEMBL
Match: A0A6J1FPH6 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111446075 PE=3 SV=1)

HSP 1 Score: 271 bits (692), Expect = 1.42e-89
Identity = 152/211 (72.04%), Postives = 169/211 (80.09%), Query Frame = 0


Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           M+   NR LPADAFPLFQ GI  VLSRWSALQLAV+NEWGGRDS RK ELLCSDIFTWFT
Sbjct: 1   MDGSGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKETLY+DDLE+IL+E MLSLNT+VDDGSIEEVA+K+I M+E+C+DGN+ SIE L QS 
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIERLRQSP 120

Query: 121 PPRVAHSHVSQVVSDDEEEE--DDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKR 180
            PR AHSHVSQ +SDDEEEE  DDDDD  N  D MRN    DMMVDAI+ Q     QP+ 
Sbjct: 121 LPRGAHSHVSQAMSDDEEEEEEDDDDDGGNGGDGMRN----DMMVDAIQQQQ----QPRA 180

Query: 181 VYQPN-PEATAEAEDGWVQVTSRRN-RGNRN 207
           V QP  PEA+A AEDGWVQVTSRR+ RG RN
Sbjct: 181 VNQPRRPEASAPAEDGWVQVTSRRSSRGTRN 203

[Close]

BLAST of MC11g0572 vs. ExPASy TrEMBL
Match: A0A6J1J400 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111481044 PE=3 SV=1)

HSP 1 Score: 265 bits (676), Expect = 4.00e-87
Identity = 148/213 (69.48%), Postives = 166/213 (77.93%), Query Frame = 0


Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           ME   NR LPADAFPLFQ GI  VLSRWSALQLAV+NEWGGRDS RK ELLCSDIFTWFT
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVDNEWGGRDSRRKVELLCSDIFTWFT 60

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKETLY+DDLE+IL+E MLSLNT+VDDGSIEEVA+K+I M+E+C+DGN+ SI  L QS 
Sbjct: 61  QNKETLYIDDLEMILDETMLSLNTQVDDGSIEEVAEKLIFMHEECVDGNFSSIGRLRQSP 120

Query: 121 PPRVAHSHVSQVVSDDEEEE-----DDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQ 180
            PR AHSHVSQ +SD+EEEE     DDD D  N  D MRN    DMMVDAI+ Q  + +Q
Sbjct: 121 LPRGAHSHVSQAMSDEEEEEEEDDDDDDGDVGNGSDGMRN----DMMVDAIQQQPRAVNQ 180

Query: 181 PKRVYQPNPEATAEAEDGWVQVTSRRN-RGNRN 207
                QP PEA+A AEDGWVQVTSRR+ RG RN
Sbjct: 181 -----QPRPEASAPAEDGWVQVTSRRSSRGTRN 204

[Close]

BLAST of MC11g0572 vs. ExPASy TrEMBL
Match: A0A6J1F8A7 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111443017 PE=3 SV=1)

HSP 1 Score: 262 bits (670), Expect = 2.41e-86
Identity = 144/207 (69.57%), Postives = 163/207 (78.74%), Query Frame = 0


Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           ME   NR LPA A PLFQ GI  VLSRWSALQLAVENEWGGRDS RK ELLCSDI TWFT
Sbjct: 1   MEGGENRLLPAGALPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKE LY+DDLE+IL+EA+LSLNT+VDDGSIEEVA+++I M+E+CLDGN+ SIE L QS 
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 PPRVAHSHVSQVVSDDEEEEDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVY 180
            PRVA SHVSQV+SDD+EEED+++      D +  +G  DMMVDAI        QP  V 
Sbjct: 121 LPRVARSHVSQVMSDDDEEEDEEE----GGDVVVGNGRRDMMVDAI--------QPTPVN 180

Query: 181 QPNPEATAEAEDGWVQVTSRRNRGNRN 207
           QP PEATAEAEDGWVQVTSRR+RG RN
Sbjct: 181 QPTPEATAEAEDGWVQVTSRRSRGTRN 195

[Close]

BLAST of MC11g0572 vs. ExPASy TrEMBL
Match: A0A6J1IM14 (pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC111476490 PE=3 SV=1)

HSP 1 Score: 256 bits (655), Expect = 4.46e-84
Identity = 142/207 (68.60%), Postives = 159/207 (76.81%), Query Frame = 0


Query: 1   MEDPANRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFT 60
           ME   NR LPA A P FQ GI  VLSRWSALQLAVENEWGGRDS RK ELLCSDI TWFT
Sbjct: 1   MEGGENRLLPAVALPSFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDILTWFT 60

Query: 61  QNKETLYVDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQ 120
           QNKE LY+DDLE+IL+EA+LSLNT+VDDGSIEEVA+++I M+E+CLDGN+ SIE L QS 
Sbjct: 61  QNKEPLYIDDLEMILDEALLSLNTQVDDGSIEEVAERLIVMHEECLDGNFSSIEKLRQSP 120

Query: 121 PPRVAHSHVSQVVSDDEEEEDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVY 180
            P+VA SHVSQV+SDDEEE     D +   D    +G  DMMVDAI        QP+ V 
Sbjct: 121 LPKVARSHVSQVMSDDEEE-----DEEEGGDVDVGNGRRDMMVDAI--------QPRPVN 180

Query: 181 QPNPEATAEAEDGWVQVTSRRNRGNRN 207
           QP PEATAEAEDGWVQVTSRR+RG RN
Sbjct: 181 QPTPEATAEAEDGWVQVTSRRSRGTRN 194

[Close]

BLAST of MC11g0572 vs. TAIR 10
Match: AT5G27990.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 124.8 bits (312), Expect = 8.1e-29
Identity = 78/203 (38.42%), Postives = 120/203 (59.11%), Query Frame = 0


Query: 6   NRRLPADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFTQNKET 65
           N  L  +A  + + GI  +L RW+A++ AVEN WGGRDS  K+    + +F +F Q+K+ 
Sbjct: 4   NATLTVEARDILKEGIGLILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQSKDP 63

Query: 66  LY-VDDLEIILNEAMLSLNTEVDDGSIEEVADKMIDMYEDCLDGNYESIENLMQSQPPRV 125
           +  ++ L  +L++ +  LNT  +DGS++EVA+ ++D+YEDC +GNYE +E L  +     
Sbjct: 64  VKDIEKLGDLLDKGLDELNTTAEDGSVDEVANLLVDLYEDCCNGNYEMLEELRATYSQTS 123

Query: 126 AHSHVSQVVSDDEEEEDDDDDAKNARDAMRNDGSSDMMVDAIEYQSNSTSQPKRVYQPNP 185
           A   V +V + D+EE DD+DD          D ++DMMVDA    SN   +   V +P  
Sbjct: 124 A--SVVKVSNGDDEESDDEDD----------DQTTDMMVDA----SNQKQEAMPVDEP-- 183

Query: 186 EATAEAEDGWVQVTSRRNRGNRN 208
                A+DGW  V+SR+N+G RN
Sbjct: 184 ----VADDGWTVVSSRKNKGKRN 184

[Close]

BLAST of MC11g0572 vs. TAIR 10
Match: AT3G22510.1 (Pre-rRNA-processing protein TSR2, conserved region )

HSP 1 Score: 85.9 bits (211), Expect = 4.2e-17
Identity = 44/100 (44.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 10  PADAFPLFQGGIKCVLSRWSALQLAVENEWGGRDSLRKSELLCSDIFTWFTQNKETLYVD 69
           P D   + Q  I  +LSRW  LQ+AV+N+WGG DSL+KS+ L  ++F   +Q+   + V+
Sbjct: 24  PMDDDSVLQRDIGELLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQS-NVITVE 83

Query: 70  DLEIILNEA-MLSLNTEVDDGSIEEVADKMIDMYEDCLDG 109
           ++E +L+E+ +LS NTE++DGSIEEVA++++ ++E+ L G
Sbjct: 84  EIENLLHESLLLSFNTEIEDGSIEEVAEQLMILHEEHLRG 122

The following BLAST results are available for this feature:

BLAST of MC11g0572 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q06672	3.7e-10	27.81	Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508...	[more]
Q3KRG3	1.1e-09	25.13	Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio OX=7955 GN=tsr2 PE=2 SV=...	[more]
Q3KPN2	3.1e-09	27.60	Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis OX=8355 GN=tsr2 PE=2 ...	[more]
Q3T090	3.5e-08	27.18	Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus OX=9913 GN=TSR2 PE=2 SV=1	[more]
Q969E8	1.3e-07	26.53	Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens OX=9606 GN=TSR2 PE=1 SV...	[more]

BLAST of MC11g0572 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137141.1	8.03e-143	100.00	pre-rRNA-processing protein TSR2 homolog [Momordica charantia]	[more]
XP_023524387.1	3.53e-92	73.08	pre-rRNA-processing protein TSR2 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022940503.1	2.94e-89	72.04	pre-rRNA-processing protein TSR2 homolog [Cucurbita moschata]	[more]
XP_022982103.1	8.26e-87	69.48	pre-rRNA-processing protein TSR2 homolog [Cucurbita maxima]	[more]
KAG6608259.1	1.44e-86	71.23	Pre-rRNA-processing protein TSR2-like protein, partial [Cucurbita argyrosperma s...	[more]

BLAST of MC11g0572 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C5N0	3.89e-143	100.00	pre-rRNA-processing protein TSR2 homolog OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1FPH6	1.42e-89	72.04	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1J400	4.00e-87	69.48	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1F8A7	2.41e-86	69.57	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1IM14	4.46e-84	68.60	pre-rRNA-processing protein TSR2 homolog OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]

BLAST of MC11g0572 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27990.1	8.1e-29	38.42	Pre-rRNA-processing protein TSR2, conserved region	[more]
AT3G22510.1	4.2e-17	44.00	Pre-rRNA-processing protein TSR2, conserved region	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019398	Pre-rRNA-processing protein TSR2	PFAM	PF10273	WGG	coord: 17..96 e-value: 4.9E-21 score: 75.1
IPR019398	Pre-rRNA-processing protein TSR2	PANTHER	PTHR21250	UNCHARACTERIZED	coord: 5..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..181
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..207
None	No IPR available	PANTHER	PTHR21250:SF4	PRE-RRNA-PROCESSING PROTEIN TSR2, MOTIF PROTEIN	coord: 5..205

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g0572.1	MC11g0572.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0005634	nucleus