MC11g0407 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0407
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Eukaryotic translation initiation factor 5A
Location	MC11: 3184914 .. 3187318 (-)
RNA-Seq Expression	MC11g0407
Synteny	MC11g0407

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGAGATGGTTTTCAACCCAAAGGAGGGGAAAAAAGAATATCAGCATTTTTTAGGGGGTTGGCGTCAGAAACCCTAATCGCACTCGCACATACGTGTCCGGTTGAAACGCGATGCTATAAATTGGTCTCCTCCTCTTGACTCGTACCCTCCTCCTTCCTCCCGTTTTCCTTCCGCTTCCACCAAAAACCCACTGTTCAACACACAACTCCACCAGGAAGCTGTAGAAATTTCAACCATGTCGGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGAGCCTCCAAGACCTACCCTCAACAGGCCGGAACCATCCGCAAGAACGGCCACATCGTCATCAAGAACCGTCCCTGCAAGGTCATTTCATCTTCTCTCTTTTTTCTTTTTTATTGCCACGATTTAATCTCCTCGTCCTCTTGATGATCCGGCCTTTCGTTGTTGCGTCTTTGATTTGTGGTTTCTAGGGTTAAATTTTGGATCGGATGTTTTAGGTTTTGCTTGATTTGATTTTATTTGATTTTTTGTTTGCCTTGTAACTGATTTAGTCTATTCTGTGCGACTTGTATCGCCTTTGACGTGCTGGACGTGATCGATGGGCATGGGCGGTGAAATATTTCTTCTCATTTTGAGTGTTGTATTGGATTGGAAAGAAATAGACGAATCTGATGTTGAAGTTACCTATATACTGCTAGATTTATTAATCTATCTATTTGGCGAGGGTTTTTGTAGTTACGATTTAGATGAGTTTTTTGATGGTTCATTTTTTGTTCGGTCAACGATTAATTTTCAGTTTGCTATTTTCTCCTCCACCCTCTCTGGGAGGACGCTGGTATGAACTGTGCAGTTGTGATTTGAATTTTGATTTTATGACGGAGACGAAAATTTTCCCGGTGTAATAAATTGTAAGGGGCGTTTTTGTTTGTTGAGACTATTATTGATATCCTTTATTGTTGTCGAAAAAAGTTAATTGAGCTTCCTAAACTTACAGTTTCTGTTTTGTGAACAATGAACTGTTGATATTTTTAGCCATTAAAGTAGACAAGCTTCCATTTTAAGCATACTCTCGAGGCAATATTTATGCTATTTTTTGAAAAATTTATCTGTTTTGTATGATAATGCAGGTGGTTGAGGTTTCAACTTCTAAGACAGGCAAGCATGGACATGCAAAGTGTCACTTTGTGGGCATTGACATCTTCACTGGCAAGAAGCTCGAGGATATTGTTCCATCATCCCACAATTGTGATGTAAGGAGAATATAATCTGGCTTGAAAATCATTTTTCATTGAGTAATATGATTTACTAGTACCATTAATGGATTTTATTTTGTGCCTTACAGGTTCCTCATGTGAATCGTACTGATTATCAGCTGATTGACATTTCTGAAGATGGATTTGTGAGTAATTTGTTTATATGAATTTGTTCAAATCAATTTTGTCTTTGTGATGTTAAATGTGATTGCTCTGTTATCTTGATATCTTTGGAAATCTACGCATGTTACCGTTCGTTCTTAATAGTTAATAATCAATTCTAGAGGTTAATACTCTGTTAAATTGTCCAATCTCGTTGGTTTGGTCATAGCTTATGGCAGTTGGTTATTATTGTTATTTTCAGAGGAGGAACTTGAAAGTAAAATAGCAAATATTAATGTGAAGGATTCATAGCAAGCATGCATCGGATTCATACATGTGATTGCTTGTGAAGTCTATTTGATCAGTCATATATTTTTATTTGATGTTTTGATTTTGCTGCAGGTGAGTCTGTTAACTGACAATGGTAACACTAAGGATGATTTGAGGCTTCCCACTGATGACAACCTGCTCACTCAGGTAAGCCACATATGAATCGACTCTTATCGTTGAAGTTATTCGAGCAGATGTTATTCCCATATTTTGTACATTTGGGTGTTAGAAGGAACCCGATTCCCTCCCTCGGCCCCCCTCACCCTATTGATATTCTATTTCTAAGATACGTGATCCATTCCATATTTCTTTGTTCGCAAATATTCCATCTCTGAGATGACTTTTTGTTTACTAAAAGCAAACGATCATGGGTTTGTATCCACAGATTAAAGATGGATTTGCTGAAGGGAAGGACCTTGTTGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGACATCGGCCCGAAGAATTAGCTTCTACACAAGCTAGCTGCTAAGTTGTGGTCGGTCCCCGGGTTCCTCTGATTGAATCTTTAAATGGTATAATTAATTAGCAGAGACTTTGTATCTGTTAACGTTTCACTCTCCCGTCCCTTTCCCTCCCCTCCCCTCTCACCTTCTGGCCCAGGATTGTATGGTTGGTTGGTTCATCATTACTGTGTTTTTATGCTGTGTTATTTTATGATATTGGTGTAATGTTATTGGGT

mRNA sequence

GTGGAGATGGTTTTCAACCCAAAGGAGGGGAAAAAAGAATATCAGCATTTTTTAGGGGGTTGGCGTCAGAAACCCTAATCGCACTCGCACATACGTGTCCGGTTGAAACGCGATGCTATAAATTGGTCTCCTCCTCTTGACTCGTACCCTCCTCCTTCCTCCCGTTTTCCTTCCGCTTCCACCAAAAACCCACTGTTCAACACACAACTCCACCAGGAAGCTGTAGAAATTTCAACCATGTCGGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGAGCCTCCAAGACCTACCCTCAACAGGCCGGAACCATCCGCAAGAACGGCCACATCGTCATCAAGAACCGTCCCTGCAAGGTGGTTGAGGTTTCAACTTCTAAGACAGGCAAGCATGGACATGCAAAGTGTCACTTTGTGGGCATTGACATCTTCACTGGCAAGAAGCTCGAGGATATTGTTCCATCATCCCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATCAGCTGATTGACATTTCTGAAGATGGATTTGTGAGTCTGTTAACTGACAATGGTAACACTAAGGATGATTTGAGGCTTCCCACTGATGACAACCTGCTCACTCAGATTAAAGATGGATTTGCTGAAGGGAAGGACCTTGTTGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGACATCGGCCCGAAGAATTAGCTTCTACACAAGCTAGCTGCTAAGTTGTGGTCGGTCCCCGGGTTCCTCTGATTGAATCTTTAAATGGTATAATTAATTAGCAGAGACTTTGTATCTGTTAACGTTTCACTCTCCCGTCCCTTTCCCTCCCCTCCCCTCTCACCTTCTGGCCCAGGATTGTATGGTTGGTTGGTTCATCATTACTGTGTTTTTATGCTGTGTTATTTTATGATATTGGTGTAATGTTATTGGGT

Coding sequence (CDS)

ATGTCGGACGAGGAGCACCACTTCGAATCCAAGGCCGACGCCGGAGCCTCCAAGACCTACCCTCAACAGGCCGGAACCATCCGCAAGAACGGCCACATCGTCATCAAGAACCGTCCCTGCAAGGTGGTTGAGGTTTCAACTTCTAAGACAGGCAAGCATGGACATGCAAAGTGTCACTTTGTGGGCATTGACATCTTCACTGGCAAGAAGCTCGAGGATATTGTTCCATCATCCCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATCAGCTGATTGACATTTCTGAAGATGGATTTGTGAGTCTGTTAACTGACAATGGTAACACTAAGGATGATTTGAGGCTTCCCACTGATGACAACCTGCTCACTCAGATTAAAGATGGATTTGCTGAAGGGAAGGACCTTGTTGTGTCGGTGATGTCTGCCATGGGAGAGGAACAAATTTGTGCCCTGAAGGACATCGGCCCGAAGAATTAG

Protein sequence

MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN

Homology

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BLAST of MC11g0407 vs. ExPASy Swiss-Prot
Match: P24922 (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 3.2e-86
Identity = 155/159 (97.48%), Postives = 156/159 (98.11%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKTYPQQAGTIRKNGHIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of MC11g0407 vs. ExPASy Swiss-Prot
Match: P69039 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=4092 GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 2.7e-85
Identity = 151/159 (94.97%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           DNLL  IKDGFAEGKDLV+SVMSAMGEEQIC +KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

[Close]

BLAST of MC11g0407 vs. ExPASy Swiss-Prot
Match: P69040 (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 315.8 bits (808), Expect = 2.7e-85
Identity = 151/159 (94.97%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           DNLL  IKDGFAEGKDLV+SVMSAMGEEQIC +KD+GPK
Sbjct: 121 DNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159

[Close]

BLAST of MC11g0407 vs. ExPASy Swiss-Prot
Match: P56337 (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 7.9e-85
Identity = 150/159 (94.34%), Postives = 155/159 (97.48%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRK+GHIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           D LL Q+KDGFAEGKDLV+SVMSAMGEEQIC +KDIGPK
Sbjct: 121 DTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159

[Close]

BLAST of MC11g0407 vs. ExPASy Swiss-Prot
Match: Q9AXQ6 (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum OX=4081 PE=2 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.0e-84
Identity = 150/159 (94.34%), Postives = 154/159 (96.86%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRK GHIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           D LL Q+KDGFAEGKDLV+SVMSAMGEEQIC +KDIGPK
Sbjct: 121 DTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159

[Close]

BLAST of MC11g0407 vs. NCBI nr
Match: XP_022133256.1 (eukaryotic translation initiation factor 5A-2 [Momordica charantia])

HSP 1 Score: 326 bits (836), Expect = 1.17e-112
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
           DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160

[Close]

BLAST of MC11g0407 vs. NCBI nr
Match: PON41654.1 (Translation elongation factor [Trema orientale])

HSP 1 Score: 322 bits (825), Expect = 5.57e-111
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
           DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160

[Close]

BLAST of MC11g0407 vs. NCBI nr
Match: XP_022936947.1 (eukaryotic translation initiation factor 5A-2 [Cucurbita moschata] >XP_022941214.1 eukaryotic translation initiation factor 5A-2 [Cucurbita moschata] >XP_022976265.1 eukaryotic translation initiation factor 5A-2 [Cucurbita maxima] >XP_022981963.1 eukaryotic translation initiation factor 5A-2 [Cucurbita maxima] >XP_023524407.1 eukaryotic translation initiation factor 5A-2 [Cucurbita pepo subsp. pepo] >KAG6608302.1 hypothetical protein SDJN03_01644, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024419.1 hypothetical protein SDJN02_13234 [Cucurbita argyrosperma subsp. argyrosperma] >KAG7037649.1 hypothetical protein SDJN02_01279 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 320 bits (820), Expect = 3.22e-110
Identity = 157/160 (98.12%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
           DNLL+QIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN
Sbjct: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160

[Close]

BLAST of MC11g0407 vs. NCBI nr
Match: XP_031257254.1 (eukaryotic translation initiation factor 5A-2 [Pistacia vera] >XP_031274392.1 eukaryotic translation initiation factor 5A-2 [Pistacia vera])

HSP 1 Score: 318 bits (816), Expect = 1.27e-109
Identity = 156/159 (98.11%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159
           DNLL+QIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK
Sbjct: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159

[Close]

BLAST of MC11g0407 vs. NCBI nr
Match: XP_017421489.1 (PREDICTED: eukaryotic translation initiation factor 5A-2 [Vigna angularis] >KOM33205.1 hypothetical protein LR48_Vigan01g276100 [Vigna angularis] >BAT76551.1 hypothetical protein VIGAN_01457200 [Vigna angularis var. angularis])

HSP 1 Score: 318 bits (816), Expect = 1.31e-109
Identity = 156/160 (97.50%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIK+RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
           D+LLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN
Sbjct: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160

[Close]

BLAST of MC11g0407 vs. ExPASy TrEMBL
Match: A0A6J1BUI3 (Eukaryotic translation initiation factor 5A OS=Momordica charantia OX=3673 GN=LOC111005893 PE=3 SV=1)

HSP 1 Score: 326 bits (836), Expect = 5.66e-113
Identity = 160/160 (100.00%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
           DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160

[Close]

BLAST of MC11g0407 vs. ExPASy TrEMBL
Match: A0A2P5AYM9 (Eukaryotic translation initiation factor 5A OS=Trema orientale OX=63057 GN=TorRG33x02_337690 PE=3 SV=1)

HSP 1 Score: 322 bits (825), Expect = 2.69e-111
Identity = 158/160 (98.75%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIF GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
           DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN
Sbjct: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160

[Close]

BLAST of MC11g0407 vs. ExPASy TrEMBL
Match: A0A6J1IIZ4 (Eukaryotic translation initiation factor 5A OS=Cucurbita maxima OX=3661 GN=LOC111476711 PE=3 SV=1)

HSP 1 Score: 320 bits (820), Expect = 1.56e-110
Identity = 157/160 (98.12%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
           DNLL+QIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN
Sbjct: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160

[Close]

BLAST of MC11g0407 vs. ExPASy TrEMBL
Match: A0A6J1FMM9 (Eukaryotic translation initiation factor 5A OS=Cucurbita moschata OX=3662 GN=LOC111446587 PE=3 SV=1)

HSP 1 Score: 320 bits (820), Expect = 1.56e-110
Identity = 157/160 (98.12%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
           DNLL+QIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN
Sbjct: 121 DNLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160

[Close]

BLAST of MC11g0407 vs. ExPASy TrEMBL
Match: A0A0L9TRN7 (Eukaryotic translation initiation factor 5A OS=Phaseolus angularis OX=3914 GN=LR48_Vigan01g276100 PE=3 SV=1)

HSP 1 Score: 318 bits (816), Expect = 6.36e-110
Identity = 156/160 (97.50%), Postives = 160/160 (100.00%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIK+RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160
           D+LLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN
Sbjct: 121 DSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPKN 160

[Close]

BLAST of MC11g0407 vs. TAIR 10
Match: AT1G13950.1 (eukaryotic elongation factor 5A-1 )

HSP 1 Score: 292.4 bits (747), Expect = 2.3e-79
Identity = 144/159 (90.57%), Postives = 150/159 (94.34%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFES +DAGASKTYPQQAGTIRKNG+IVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDG+VSLLTDNG+TKDDL+LP D
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           D LL QIK GF +GKDLVVSVMSAMGEEQI ALKDIGPK
Sbjct: 121 DTLLQQIKSGFDDGKDLVVSVMSAMGEEQINALKDIGPK 158

[Close]

BLAST of MC11g0407 vs. TAIR 10
Match: AT1G69410.1 (eukaryotic elongation factor 5A-3 )

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-78
Identity = 139/159 (87.42%), Postives = 150/159 (94.34%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFES +DAGASKTYPQQAG IRK GHIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNR DYQLIDISEDGFVSLLTDNG+TKDDL+LPTD
Sbjct: 61  VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 160
           + LLTQ+K+GF EGKD+VVSVMSAMGEEQ+CALK++GPK
Sbjct: 121 EALLTQLKNGFEEGKDIVVSVMSAMGEEQMCALKEVGPK 158

[Close]

BLAST of MC11g0407 vs. TAIR 10
Match: AT1G26630.1 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 271.9 bits (694), Expect = 3.2e-73
Identity = 129/157 (82.17%), Postives = 144/157 (91.72%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFE+ +++GASKTYPQ AG IRK GHIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGFVSLLTD+G TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 DNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIG 158
           D L  Q++ GF EGKD+VVSVMS+MGEEQICA+K++G
Sbjct: 121 DGLTAQMRLGFDEGKDIVVSVMSSMGEEQICAVKEVG 156

[Close]

BLAST of MC11g0407 vs. TAIR 10
Match: AT1G26630.2 (Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein )

HSP 1 Score: 226.5 bits (576), Expect = 1.5e-59
Identity = 107/127 (84.25%), Postives = 116/127 (91.34%), Query Frame = 0


Query: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFE+ +++GASKTYPQ AG IRK GHIVIKNRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120
           V IDIFT KKLEDIVPSSHNCDVPHVNR DYQLIDI+EDGFVSLLTD+G TKDDL+LPTD
Sbjct: 61  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 120

Query: 121 DNLLTQI 128
           D L  Q+
Sbjct: 121 DGLTAQL 126

The following BLAST results are available for this feature:

BLAST of MC11g0407 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P24922	3.2e-86	97.48	Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia OX=40...	[more]
P69039	2.7e-85	94.97	Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia OX=40...	[more]
P69040	2.7e-85	94.97	Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum OX=4097 GN=EI...	[more]
P56337	7.9e-85	94.34	Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum OX=4113 GN=EI...	[more]
Q9AXQ6	1.0e-84	94.34	Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum OX=4081 PE...	[more]

BLAST of MC11g0407 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133256.1	1.17e-112	100.00	eukaryotic translation initiation factor 5A-2 [Momordica charantia]	[more]
PON41654.1	5.57e-111	98.75	Translation elongation factor [Trema orientale]	[more]
XP_022936947.1	3.22e-110	98.13	eukaryotic translation initiation factor 5A-2 [Cucurbita moschata] >XP_022941214...	[more]
XP_031257254.1	1.27e-109	98.11	eukaryotic translation initiation factor 5A-2 [Pistacia vera] >XP_031274392.1 eu...	[more]
XP_017421489.1	1.31e-109	97.50	PREDICTED: eukaryotic translation initiation factor 5A-2 [Vigna angularis] >KOM3...	[more]

BLAST of MC11g0407 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BUI3	5.66e-113	100.00	Eukaryotic translation initiation factor 5A OS=Momordica charantia OX=3673 GN=LO...	[more]
A0A2P5AYM9	2.69e-111	98.75	Eukaryotic translation initiation factor 5A OS=Trema orientale OX=63057 GN=TorRG...	[more]
A0A6J1IIZ4	1.56e-110	98.13	Eukaryotic translation initiation factor 5A OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]
A0A6J1FMM9	1.56e-110	98.13	Eukaryotic translation initiation factor 5A OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A0L9TRN7	6.36e-110	97.50	Eukaryotic translation initiation factor 5A OS=Phaseolus angularis OX=3914 GN=LR...	[more]

BLAST of MC11g0407 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13950.1	2.3e-79	90.57	eukaryotic elongation factor 5A-1	[more]
AT1G69410.1	1.1e-78	87.42	eukaryotic elongation factor 5A-3	[more]
AT1G26630.1	3.2e-73	82.17	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]
AT1G26630.2	1.5e-59	84.25	Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020189	Translation elongation factor, IF5A C-terminal	SMART	SM01376	eIF_5a_2	coord: 85..154 e-value: 4.8E-35 score: 132.4
IPR020189	Translation elongation factor, IF5A C-terminal	PFAM	PF01287	eIF-5a	coord: 85..154 e-value: 7.9E-30 score: 102.8
IPR001884	Translation elongation factor IF5A-like	TIGRFAM	TIGR00037	TIGR00037	coord: 17..153 e-value: 1.6E-40 score: 135.9
IPR001884	Translation elongation factor IF5A-like	PIRSF	PIRSF003025	Transl_init_eIF5A	coord: 1..157 e-value: 2.0E-67 score: 223.6
IPR001884	Translation elongation factor IF5A-like	PANTHER	PTHR11673	TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER	coord: 1..156
None	No IPR available	GENE3D	2.40.50.140		coord: 86..159 e-value: 3.6E-35 score: 121.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	PANTHER	PTHR11673:SF42	BNAA07G09420D PROTEIN	coord: 1..156
None	No IPR available	CDD	cd04468	S1_eIF5A	coord: 86..156 e-value: 3.34846E-32 score: 107.623
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..85 e-value: 1.9E-43 score: 148.2
IPR019769	Translation elongation factor, IF5A, hypusine site	PROSITE	PS00302	IF5A_HYPUSINE	coord: 50..57
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 86..156
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 15..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g0407.1	MC11g0407.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045901	positive regulation of translational elongation
biological_process	GO:0045905	positive regulation of translational termination
biological_process	GO:0006413	translational initiation
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0003723	RNA binding