MC11g0399 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0399
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Nuclear nucleic acid-binding protein C1D
Location	MC11: 3141809 .. 3144097 (+)
RNA-Seq Expression	MC11g0399
Synteny	MC11g0399

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGCAAAATAATTTAATCATAATTTAACGCAGAAACAAATTCAACACACTGGAGATCCGAAGCGTATCGGGCCAAACTGCTGCCATAAACCTCTTCGAACCCAAAAGCCCTACCCGTCCCCTTCCCCTTCCCCCACCGCCTTTAACGACAACGGTCCGAGCTCGACCTTCGCCGTCGCCATCTCAACAAATCTCCTGCTAAGGATTTCAATTTCGCAGGGTTTCTGTGTGCGCCTGTGACAGAGACGGAGGTCAAAATTGGGGCCAAATATGGAGGGGGGTGTTCGAGAATCCGCCGTGGTGCCCGAGTCGGCGATGGATTCAGTGAAGAAGACATTGGACAATGTAGAAGAAGTGCGAACTCACCTGATTTCCTTCCTTTCGATCTCCGAGCCCGAGGTCCTCGCTCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCTAGAATCACTACCACTCTATTCTCGTGTAAGATTCGTTGATTACTCGTGGATAATACTTGATTTTGTTCCTCTTTTGTTTTGGATTATGGAGGTTTGGTGATTTGCAGTGAAGGTGAGGTGTAGCGGAGTTCACCCCGATGATCATCCTGTCAAGTCAGAGCTTGTAATTATTCTCGTACCTTGTATCTGGTGATTAAAACTGAAATTTTCTCGCATGGGCAGTAAATTTTATTCTCCCATTGCTTCTTTGAACATCATTCTTATTCTTTCTTTTGCATGTAGGAGAGATTAAGCTTGTATCAAGAAAAACTAGAACGGTTCATTGGCTTGAGTAAAGGTATTCTTGATCTTTGGTTTTTCGTTTATATCAGCACATTTTCTTTGTCATTCCTACTTCCTTCCTCGGTTGATTAATTGTTTTGTATTTAATTTTGCTCATGAAGCACCATTAAGGCCTTCTACTACCTTGAACTACCAAGCAGCTACACGTTTTATTGAACATTCTCTGCCTGATCTCACCCAAGGTTGGTTGAATTTGTTTGCATTTTGGTTTTGAGGAGGGGGATTTTTGTGCTTGGTTCCCTTTGATGAGGGAAATATTTCAATATTTTCAGAGCAAAAGAAGAGTATGAGGGATATTAGTAGGGGGAAGGGACCAAAAATTAAGCATTTAGAGAGGAATGCACAAAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAACTGCTGCCAAGGATTTTCTTGCAAAAGCAGCGCGTGAGCTTCTTGGTGAAAATAATGGAGGTTTTCAGGGACCACTCTGTGGTGACGCTTCAGATGATGACCTGCAGGAGGACTGAATTCCTGATTTTACTTGGTACCTGTTCATCACGTTTTTATTATAATTTTGGCGTCTTTTTTTTTTTCTTTTTAATGAATGCATGCTTTTCCATACGATTGTTGCTAGAACATGATTCGATTTTCTTAATAAATTAGCCATTTTTAGTTCTATAGCTGACTCATATACTATTATCTGTTGTTAGCTTGCTTAGTGTATGGATTGTGAGTTGTAAATAAAAGAAAATATATTCTGTTTCTGGATTTCTTTGATGTGTTTCTATATGGTGATATGTAGATCATGCTCTATTATTATTGTTAAACGAACGCTATTATGCATTATTGCAGCGTCATTTCGAATGCAACAATAGTTTTTCTTCAATCGAACTGTATCCTTTCGTCACTAAACTGAGTGCTATAATTTTTGTTTACTCCATGCAAATACTCCATGCAAACAGATTACTTCCGTTTATGTATATGCACTCGTTCCTCTATGTTTTAACACTTTCCTTCACTTTTACATCTTCCAGGATTATGAAAACCAGATTCACCTGTGCACTTAATTATCCCAACTCTCGAAGAATTGGTCCATTTTGAAGTTGTAGAGGATCATCTGTTTTCTTTTTCTTTCCTTCTTCTTGTTTCTCCCTACAACATTAAGCCGTTTTCCCTTTACTTTATCTAGAAGTCTTCATATATATGCATTGGAAGTTTCAGTCCCACCATAAGTTTAAGTTACTATTAGGACCTGGTTGGGAATTTGGCTCTCTACTCTTTCTCACAGGCTGATGTTCTTGGTTGCTTCCAAGTTCCACCCCAATATTTTTTGAACTAGTGTGAGTGATCGACATGATTTTGATAAAAGGAGGCCTTGCCTTTTACATGTAAAGTAGCCTACATGGAATCTGACTTCTTTTTTTTCTTCTGGGTCTGTATATGAATCAGCATCTTGTTATGTGGATTAGCCTTTTGCCATAAATTAATAATAGCGTGTTAGTTGTGATGAATCGCCT

mRNA sequence

TTGCAAAATAATTTAATCATAATTTAACGCAGAAACAAATTCAACACACTGGAGATCCGAAGCGTATCGGGCCAAACTGCTGCCATAAACCTCTTCGAACCCAAAAGCCCTACCCGTCCCCTTCCCCTTCCCCCACCGCCTTTAACGACAACGGTCCGAGCTCGACCTTCGCCGTCGCCATCTCAACAAATCTCCTGCTAAGGATTTCAATTTCGCAGGGTTTCTGTGTGCGCCTGTGACAGAGACGGAGGTCAAAATTGGGGCCAAATATGGAGGGGGGTGTTCGAGAATCCGCCGTGGTGCCCGAGTCGGCGATGGATTCAGTGAAGAAGACATTGGACAATGTAGAAGAAGTGCGAACTCACCTGATTTCCTTCCTTTCGATCTCCGAGCCCGAGGTCCTCGCTCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCTAGAATCACTACCACTCTATTCTCGTTGAAGGTGAGGTGTAGCGGAGTTCACCCCGATGATCATCCTGTCAAGTCAGAGCTTGAGAGATTAAGCTTGTATCAAGAAAAACTAGAACGGTTCATTGGCTTGAGTAAAGCACCATTAAGGCCTTCTACTACCTTGAACTACCAAGCAGCTACACGTTTTATTGAACATTCTCTGCCTGATCTCACCCAAGAGCAAAAGAAGAGTATGAGGGATATTAGTAGGGGGAAGGGACCAAAAATTAAGCATTTAGAGAGGAATGCACAAAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAACTGCTGCCAAGGATTTTCTTGCAAAAGCAGCGCGTGAGCTTCTTGGTGAAAATAATGGAGGTTTTCAGGGACCACTCTGTGGTGACGCTTCAGATGATGACCTGCAGGAGGACTGAATTCCTGATTTTACTTGGATTATGAAAACCAGATTCACCTGTGCACTTAATTATCCCAACTCTCGAAGAATTGGTCCATTTTGAAGTTGTAGAGGATCATCTGTTTTCTTTTTCTTTCCTTCTTCTTGTTTCTCCCTACAACATTAAGCCGTTTTCCCTTTACTTTATCTAGAAGTCTTCATATATATGCATTGGAAGTTTCAGTCCCACCATAAGTTTAAGTTACTATTAGGACCTGGTTGGGAATTTGGCTCTCTACTCTTTCTCACAGGCTGATGTTCTTGGTTGCTTCCAAGTTCCACCCCAATATTTTTTGAACTAGTGTGAGTGATCGACATGATTTTGATAAAAGGAGGCCTTGCCTTTTACATGTAAAGTAGCCTACATGGAATCTGACTTCTTTTTTTTCTTCTGGGTCTGTATATGAATCAGCATCTTGTTATGTGGATTAGCCTTTTGCCATAAATTAATAATAGCGTGTTAGTTGTGATGAATCGCCT

Coding sequence (CDS)

ATGGAGGGGGGTGTTCGAGAATCCGCCGTGGTGCCCGAGTCGGCGATGGATTCAGTGAAGAAGACATTGGACAATGTAGAAGAAGTGCGAACTCACCTGATTTCCTTCCTTTCGATCTCCGAGCCCGAGGTCCTCGCTCAAATGCAGCCTCTCCAACGGGCTCAGTCTATGCTTTTGCTTGCTAGAATCACTACCACTCTATTCTCGTTGAAGGTGAGGTGTAGCGGAGTTCACCCCGATGATCATCCTGTCAAGTCAGAGCTTGAGAGATTAAGCTTGTATCAAGAAAAACTAGAACGGTTCATTGGCTTGAGTAAAGCACCATTAAGGCCTTCTACTACCTTGAACTACCAAGCAGCTACACGTTTTATTGAACATTCTCTGCCTGATCTCACCCAAGAGCAAAAGAAGAGTATGAGGGATATTAGTAGGGGGAAGGGACCAAAAATTAAGCATTTAGAGAGGAATGCACAAAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAACTGCTGCCAAGGATTTTCTTGCAAAAGCAGCGCGTGAGCTTCTTGGTGAAAATAATGGAGGTTTTCAGGGACCACTCTGTGGTGACGCTTCAGATGATGACCTGCAGGAGGACTGA

Protein sequence

MEGGVRESAVVPESAMDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLLARITTTLFSLKVRCSGVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAATRFIEHSLPDLTQEQKKSMRDISRGKGPKIKHLERNAQKKRKYQSSEKQSVQTAAKDFLAKAARELLGENNGGFQGPLCGDASDDDLQED

Homology

[Close]

BLAST of MC11g0399 vs. ExPASy Swiss-Prot
Match: Q5ZHS3 (Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.1e-09
Identity = 35/113 (30.97%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 16  MDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLLARITTTLFSLKVRCS 75
           + + +K+L +V+E+   L + +S+S  E+L +++PL++A+  L+ A    ++F + +   
Sbjct: 18  LTTFEKSLTSVDEM---LKTMMSVSRSELLQKLEPLEQAKLDLVSAYTLNSMFWVYLATQ 77

Query: 76  GVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAATRFIEHSL 129
           G++P +HPVK ELER+  Y  K++      KA     + L+  AA+RF+ ++L
Sbjct: 78  GINPKEHPVKQELERIRTYMNKVKEIADKKKA-----SKLDKGAASRFVRNAL 122

[Close]

BLAST of MC11g0399 vs. ExPASy Swiss-Prot
Match: Q3KPR1 (Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis OX=8355 GN=c1d PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.3e-09
Identity = 45/139 (32.37%), Postives = 74/139 (53.24%), Query Frame = 0


Query: 24  DNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLLARITTTLFSLKVRCSGVHPDDHP 83
           ++V  V   L   +S+S  E+L +++PL++A+  L+ A    +LF + +   G++P +HP
Sbjct: 24  NSVGSVDEMLKKMMSVSRSELLQKIEPLEQAKLDLVSAYTLNSLFWIYLTTQGINPKEHP 83

Query: 84  VKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAATRFIEHSLPDLTQEQKKSMRDIS 143
           VK ELER+  Y  +++      KA       L+  AA RFI+H+L D T E+        
Sbjct: 84  VKEELERIRGYMNRVKEITDRKKA-----ARLDKGAARRFIKHALCDPTSEE-------- 143

Query: 144 RGKGPKIKHLERNAQKKRK 163
               P  K ++  A+KKRK
Sbjct: 144 ---APPAK-MDCKAKKKRK 145

[Close]

BLAST of MC11g0399 vs. ExPASy Swiss-Prot
Match: Q5XJ97 (Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-08
Identity = 34/126 (26.98%), Postives = 69/126 (54.76%), Query Frame = 0


Query: 12  PESAMDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLLARITTTLFSLK 71
           P    D++     ++  V+  + + +S+S  + L ++ PL++A+  L+ A    ++F + 
Sbjct: 11  PTEIEDNLNDFDSSLSSVQNMVQTLVSVSRSDRLLKLDPLEQAKLDLMSAYALNSMFWMY 70

Query: 72  VRCSGVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAATRFIEHSLPDL 131
           +   GV+P DHP+K ELER+  Y  K++      KA       ++ +AA+RF+ ++L D 
Sbjct: 71  LVTQGVNPKDHPIKQELERIRTYMNKVKEITDRRKA-----AHIDKEAASRFVRNALWDA 130

Query: 132 TQEQKK 138
             +++K
Sbjct: 131 DDKKRK 131

[Close]

BLAST of MC11g0399 vs. ExPASy Swiss-Prot
Match: Q7TSU0 (Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus OX=10029 GN=C1D PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-07
Identity = 37/132 (28.03%), Postives = 78/132 (59.09%), Query Frame = 0


Query: 15  AMDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLLARITTTLFSLKVRC 74
           ++ +++ +L  V+++   L + +S+S  E+L ++ PL++A+  L+ A    ++F + +  
Sbjct: 17  SLSALESSLGAVDDM---LKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLAT 76

Query: 75  SGVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAATRFIEHSLPDLTQE 134
            GV+P +HPVK ELER+ +Y  +++      KA       L+  AA+RF++++L +   +
Sbjct: 77  QGVNPKEHPVKQELERIRVYMNRVKEITDKKKA-----AKLDRGAASRFVKNALWE--PK 136

Query: 135 QKKSMRDISRGK 147
           QK +    ++GK
Sbjct: 137 QKNTPNVANKGK 138

[Close]

BLAST of MC11g0399 vs. ExPASy Swiss-Prot
Match: O35473 (Nuclear nucleic acid-binding protein C1D OS=Mus musculus OX=10090 GN=C1d PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.0e-07
Identity = 32/114 (28.07%), Postives = 69/114 (60.53%), Query Frame = 0


Query: 15  AMDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLLARITTTLFSLKVRC 74
           ++ +++ +L  V+++   L + +++S  E+L ++ PL++A+  L+ A    ++F + +  
Sbjct: 17  SLTALESSLGAVDDM---LKTMMAVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLAT 76

Query: 75  SGVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAATRFIEHSL 129
            GV+P +HPVK ELER+ +Y  +++      KA       L+  AA+RF++++L
Sbjct: 77  QGVNPKEHPVKQELERIRVYMNRVKEITDKKKA-----AKLDRGAASRFVKNAL 122

[Close]

BLAST of MC11g0399 vs. NCBI nr
Match: XP_022142600.1 (nuclear nucleic acid-binding protein C1D [Momordica charantia] >XP_022142607.1 nuclear nucleic acid-binding protein C1D [Momordica charantia])

HSP 1 Score: 400 bits (1029), Expect = 1.96e-140
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MEGGVRESAVVPESAMDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRESAVVPESAMDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPESAMDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARITTTLFSLKVRCSGVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAA 120
           ARITTTLFSLKVRCSGVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAA
Sbjct: 61  ARITTTLFSLKVRCSGVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKKSMRDISRGKGPKIKHLERNAQKKRKYQSSEKQSVQTAAKDFLA 180
           TRFIEHSLPDLTQEQKKSMRDISRGKGPKIKHLERNAQKKRKYQSSEKQSVQTAAKDFLA
Sbjct: 121 TRFIEHSLPDLTQEQKKSMRDISRGKGPKIKHLERNAQKKRKYQSSEKQSVQTAAKDFLA 180

Query: 181 KAARELLGENNGGFQGPLCGDASDDDLQED 210
           KAARELLGENNGGFQGPLCGDASDDDLQED
Sbjct: 181 KAARELLGENNGGFQGPLCGDASDDDLQED 210

[Close]

BLAST of MC11g0399 vs. NCBI nr
Match: XP_022939979.1 (nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata] >XP_022939980.1 nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata])

HSP 1 Score: 355 bits (910), Expect = 2.69e-122
Identity = 182/210 (86.67%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MEGGVRESAVVPESAMDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRESAVVPE  MDSVK TLDNVE+V+THLISFLSI+EP+VLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARITTTLFSLKVRCSGVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAA 120
           +R TTTLF+LK+RCSGVHPDDHP+KSELERLSLYQEKLERFIGLSKAPL+ STTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKKSMRDISRGKGPKIKHLERNAQKKRKYQSSEKQSVQTAAKDFLA 180
           TRFIEHSLPDLTQEQK+ MRDISRGKGPK+K +ER  QKKRKYQSSEKQSVQ AAK+FL 
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQVERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGENNGGFQGPLCGDASDDDLQED 210
           KAARELLG+NNGG QGPLCGDAS+DDLQED
Sbjct: 181 KAARELLGDNNGGLQGPLCGDASNDDLQED 210

[Close]

BLAST of MC11g0399 vs. NCBI nr
Match: XP_023524382.1 (nuclear nucleic acid-binding protein C1D-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 353 bits (907), Expect = 7.71e-122
Identity = 181/210 (86.19%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MEGGVRESAVVPESAMDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRESAVVPE  MDSVK TLDNVE+V+THLISFLSI+EP+VLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVKTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARITTTLFSLKVRCSGVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAA 120
           +R TTTLF+LK+RCSGVHPDDHP+KSELERLSLYQEKLERFIGLSKAPL+ STTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKKSMRDISRGKGPKIKHLERNAQKKRKYQSSEKQSVQTAAKDFLA 180
           TRFIEHSLPDL+QEQK+ MRDISRGKGPK+K +ER  QKKRKYQSSEKQSVQ AAK+FL 
Sbjct: 121 TRFIEHSLPDLSQEQKQGMRDISRGKGPKMKQVERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGENNGGFQGPLCGDASDDDLQED 210
           KAARELLG+NNGG QGPLCGDAS+DDLQED
Sbjct: 181 KAARELLGDNNGGLQGPLCGDASNDDLQED 210

[Close]

BLAST of MC11g0399 vs. NCBI nr
Match: KAG7037658.1 (Nuclear nucleic acid-binding protein C1D [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 352 bits (903), Expect = 3.14e-121
Identity = 181/210 (86.19%), Postives = 197/210 (93.81%), Query Frame = 0


Query: 1   MEGGVRESAVVPESAMDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRESAVVPE  MDSVK TLDNVE+V+THLISFLSI+ P+VLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAGPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARITTTLFSLKVRCSGVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAA 120
           +R TTTLF+LK+RCSGVHPDDHP+KSELERLSLYQEKLERFIGLSKAPL+ STTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKKSMRDISRGKGPKIKHLERNAQKKRKYQSSEKQSVQTAAKDFLA 180
           TRFIEHSLPDLTQEQK+ MRDISRGKGPK+K +ER  QKKRKYQSSEKQSVQ AAK+FL 
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQVERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGENNGGFQGPLCGDASDDDLQED 210
           KAARELLG+NNGG QGPLCGDAS+DDLQED
Sbjct: 181 KAARELLGDNNGGLQGPLCGDASNDDLQED 210

[Close]

BLAST of MC11g0399 vs. NCBI nr
Match: XP_022981849.1 (nuclear nucleic acid-binding protein C1D-like [Cucurbita maxima] >XP_022981850.1 nuclear nucleic acid-binding protein C1D-like [Cucurbita maxima])

HSP 1 Score: 350 bits (897), Expect = 2.32e-120
Identity = 180/207 (86.96%), Postives = 196/207 (94.69%), Query Frame = 0


Query: 1   MEGGVRESAVVPESAMDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRESAVVPE AMDSVK TLD+VE+V+THLISFLSI+EP+VLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARITTTLFSLKVRCSGVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAA 120
           +R TTTLF+LK+RCSGVHPDDHP+KSELERLSLYQEKLERFIGLSKAPL+ STTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKKSMRDISRGKGPKIKHLERNAQKKRKYQSSEKQSVQTAAKDFLA 180
           TRFIEHSLPDLTQEQK+ MRDISRGKGPK+K LER  QKKRKYQSSEKQSVQ AAK+FL 
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQLERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGENNGGFQGPLCGDASDDDL 207
           KAARELLG+NNGG QGPLCGDAS+DDL
Sbjct: 181 KAARELLGDNNGGLQGPLCGDASNDDL 207

[Close]

BLAST of MC11g0399 vs. ExPASy TrEMBL
Match: A0A6J1CLD8 (Nuclear nucleic acid-binding protein C1D OS=Momordica charantia OX=3673 GN=LOC111012672 PE=3 SV=1)

HSP 1 Score: 400 bits (1029), Expect = 9.47e-141
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MEGGVRESAVVPESAMDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRESAVVPESAMDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPESAMDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARITTTLFSLKVRCSGVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAA 120
           ARITTTLFSLKVRCSGVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAA
Sbjct: 61  ARITTTLFSLKVRCSGVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKKSMRDISRGKGPKIKHLERNAQKKRKYQSSEKQSVQTAAKDFLA 180
           TRFIEHSLPDLTQEQKKSMRDISRGKGPKIKHLERNAQKKRKYQSSEKQSVQTAAKDFLA
Sbjct: 121 TRFIEHSLPDLTQEQKKSMRDISRGKGPKIKHLERNAQKKRKYQSSEKQSVQTAAKDFLA 180

Query: 181 KAARELLGENNGGFQGPLCGDASDDDLQED 210
           KAARELLGENNGGFQGPLCGDASDDDLQED
Sbjct: 181 KAARELLGENNGGFQGPLCGDASDDDLQED 210

[Close]

BLAST of MC11g0399 vs. ExPASy TrEMBL
Match: A0A6J1FIR0 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111445751 PE=3 SV=1)

HSP 1 Score: 355 bits (910), Expect = 1.30e-122
Identity = 182/210 (86.67%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MEGGVRESAVVPESAMDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRESAVVPE  MDSVK TLDNVE+V+THLISFLSI+EP+VLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARITTTLFSLKVRCSGVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAA 120
           +R TTTLF+LK+RCSGVHPDDHP+KSELERLSLYQEKLERFIGLSKAPL+ STTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKKSMRDISRGKGPKIKHLERNAQKKRKYQSSEKQSVQTAAKDFLA 180
           TRFIEHSLPDLTQEQK+ MRDISRGKGPK+K +ER  QKKRKYQSSEKQSVQ AAK+FL 
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQVERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGENNGGFQGPLCGDASDDDLQED 210
           KAARELLG+NNGG QGPLCGDAS+DDLQED
Sbjct: 181 KAARELLGDNNGGLQGPLCGDASNDDLQED 210

[Close]

BLAST of MC11g0399 vs. ExPASy TrEMBL
Match: A0A6J1J0U0 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita maxima OX=3661 GN=LOC111480869 PE=3 SV=1)

HSP 1 Score: 350 bits (897), Expect = 1.12e-120
Identity = 180/207 (86.96%), Postives = 196/207 (94.69%), Query Frame = 0


Query: 1   MEGGVRESAVVPESAMDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLL 60
           MEGGVRESAVVPE AMDSVK TLD+VE+V+THLISFLSI+EP+VLAQM+PLQRAQSMLLL
Sbjct: 1   MEGGVRESAVVPEKAMDSVKMTLDSVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARITTTLFSLKVRCSGVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAA 120
           +R TTTLF+LK+RCSGVHPDDHP+KSELERLSLYQEKLERFIGLSKAPL+ STTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKKSMRDISRGKGPKIKHLERNAQKKRKYQSSEKQSVQTAAKDFLA 180
           TRFIEHSLPDLTQEQK+ MRDISRGKGPK+K LER  QKKRKYQSSEKQSVQ AAK+FL 
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQLERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGENNGGFQGPLCGDASDDDL 207
           KAARELLG+NNGG QGPLCGDAS+DDL
Sbjct: 181 KAARELLGDNNGGLQGPLCGDASNDDL 207

[Close]

BLAST of MC11g0399 vs. ExPASy TrEMBL
Match: A0A5D3D8Y3 (Nuclear nucleic acid-binding protein C1D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001320 PE=3 SV=1)

HSP 1 Score: 345 bits (886), Expect = 6.12e-119
Identity = 181/211 (85.78%), Postives = 196/211 (92.89%), Query Frame = 0


Query: 1   MEGGVRESAVVPESAMDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLL 60
           MEGGVR+ AVVPE  MDSVK TLDNVE V+THLISFLSI+EPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARITTTLFSLKVRCSGVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAA 120
           AR+TTTLF+LK+RC+GVH DDHP+KSELERLSLY++KLERFIGLSK PL+ STTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSKVPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKKSMRDISRGKGPKIKHLERNAQKKRKYQSSEKQSVQTAAKDFLA 180
           TRFIEHSLPDLTQEQK SMRDISRGKG K+K LERN QKKRKYQSSEKQSVQTAAK+FL 
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGENNGGFQGPLCGDASDDD-LQED 210
           KAARELLG++NGG QGPLCGDASDDD LQED
Sbjct: 181 KAARELLGDSNGGLQGPLCGDASDDDALQED 211

[Close]

BLAST of MC11g0399 vs. ExPASy TrEMBL
Match: A0A1S3BUS6 (Nuclear nucleic acid-binding protein C1D OS=Cucumis melo OX=3656 GN=LOC103493742 PE=3 SV=1)

HSP 1 Score: 345 bits (886), Expect = 6.12e-119
Identity = 181/211 (85.78%), Postives = 196/211 (92.89%), Query Frame = 0


Query: 1   MEGGVRESAVVPESAMDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQSMLLL 60
           MEGGVR+ AVVPE  MDSVK TLDNVE V+THLISFLSI+EPEVLAQMQPLQRAQSMLLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARITTTLFSLKVRCSGVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTLNYQAA 120
           AR+TTTLF+LK+RC+GVH DDHP+KSELERLSLY++KLERFIGLSK PL+ STTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSKVPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKKSMRDISRGKGPKIKHLERNAQKKRKYQSSEKQSVQTAAKDFLA 180
           TRFIEHSLPDLTQEQK SMRDISRGKG K+K LERN QKKRKYQSSEKQSVQTAAK+FL 
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGENNGGFQGPLCGDASDDD-LQED 210
           KAARELLG++NGG QGPLCGDASDDD LQED
Sbjct: 181 KAARELLGDSNGGLQGPLCGDASDDDALQED 211

[Close]

BLAST of MC11g0399 vs. TAIR 10
Match: AT5G25080.1 (Sas10/Utp3/C1D family )

HSP 1 Score: 227.6 bits (579), Expect = 9.1e-60
Identity = 123/212 (58.02%), Postives = 164/212 (77.36%), Query Frame = 0


Query: 1   MEGGVRES-----AVVPESAMDSVKKTLDNVEEVRTHLISFLSISEPEVLAQMQPLQRAQ 60
           MEGG   S      VVPESA+++V +TL  ++E++  L   L+++EPEVLA MQPLQRA+
Sbjct: 1   MEGGGGSSGGGAGGVVPESAIEAVNQTLAYLKELKPQLEQMLTLAEPEVLAAMQPLQRAK 60

Query: 61  SMLLLARITTTLFSLKVRCSGVHPDDHPVKSELERLSLYQEKLERFIGLSKAPLRPSTTL 120
           +M LLA  TTTL+ L++RC+GV PDDH VKSE+ER+++Y+EK ++ +  SK PLRP+T L
Sbjct: 61  TMHLLAEATTTLYELRLRCTGVDPDDHRVKSEIERINVYREKFQKCVDQSKGPLRPTTVL 120

Query: 121 NYQAATRFIEHSLPDLTQEQKKSMRDISRGKGPKIKHLERNAQKKRKYQSSEKQSVQTAA 180
           N QAATRFIEHSLPDLT  QK+S+RD+S+G+  +I++ E +A +KRKYQS+EKQSVQ+AA
Sbjct: 121 NRQAATRFIEHSLPDLTSTQKQSIRDLSKGEKSRIRYSETSA-RKRKYQSNEKQSVQSAA 180

Query: 181 KDFLAKAARELLGENNGGFQGPL--CGDASDD 206
           KDFL KAARE++G N  G +GPL    D SDD
Sbjct: 181 KDFLEKAAREIIGHNENGLKGPLVAAADGSDD 211

The following BLAST results are available for this feature:

BLAST of MC11g0399 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ZHS3	7.1e-09	30.97	Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV...	[more]
Q3KPR1	9.3e-09	32.37	Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis OX=8355 GN=c1d PE=2 S...	[more]
Q5XJ97	2.1e-08	26.98	Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1	[more]
Q7TSU0	1.3e-07	28.03	Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus OX=10029 GN=C1D P...	[more]
O35473	3.0e-07	28.07	Nuclear nucleic acid-binding protein C1D OS=Mus musculus OX=10090 GN=C1d PE=1 SV...	[more]

BLAST of MC11g0399 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142600.1	1.96e-140	100.00	nuclear nucleic acid-binding protein C1D [Momordica charantia] >XP_022142607.1 n...	[more]
XP_022939979.1	2.69e-122	86.67	nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata] >XP_022939980...	[more]
XP_023524382.1	7.71e-122	86.19	nuclear nucleic acid-binding protein C1D-like [Cucurbita pepo subsp. pepo]	[more]
KAG7037658.1	3.14e-121	86.19	Nuclear nucleic acid-binding protein C1D [Cucurbita argyrosperma subsp. argyrosp...	[more]
XP_022981849.1	2.32e-120	86.96	nuclear nucleic acid-binding protein C1D-like [Cucurbita maxima] >XP_022981850.1...	[more]

BLAST of MC11g0399 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CLD8	9.47e-141	100.00	Nuclear nucleic acid-binding protein C1D OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1FIR0	1.30e-122	86.67	Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1J0U0	1.12e-120	86.96	Nuclear nucleic acid-binding protein C1D OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A5D3D8Y3	6.12e-119	85.78	Nuclear nucleic acid-binding protein C1D OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BUS6	6.12e-119	85.78	Nuclear nucleic acid-binding protein C1D OS=Cucumis melo OX=3656 GN=LOC103493742...	[more]

BLAST of MC11g0399 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25080.1	9.1e-60	58.02	Sas10/Utp3/C1D family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007146	Sas10/Utp3/C1D	PFAM	PF04000	Sas10_Utp3	coord: 24..97 e-value: 4.4E-7 score: 30.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..210
None	No IPR available	PANTHER	PTHR15341:SF3	NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1D	coord: 9..198
IPR011082	Exosome-associated factor Rrp47/DNA strand repair C1D	PANTHER	PTHR15341	SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR	coord: 9..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g0399.1	MC11g0399.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000178	exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003723	RNA binding