MC11g0274 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0274
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	40S ribosomal protein S29
Location	MC11: 2161888 .. 2162357 (+)
RNA-Seq Expression	MC11g0274
Synteny	MC11g0274

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACATTCAAACGTGTGGAATTCACATCCAAAGAACTACGGACCCGGTTCTCGGACTTGGTATGTCTTCTCCTCTATCTCAATTTTGCATCTTCACCCGAATATGCCCCTCTTCACATTGGATTTTGATTATGAACCATGTTCAACGGCTGCCCTTTTAACTGTTCATGTAATTGAGATCTTACTGGCTCGGATTTCAGAGGAATTCGTTTAATTACCGTCGCGTTCGGCACAGATTACATGGTTCTCATAAGCAGAAACGAAATCGAAAAAATTAAGCTGATTTTCGAATGTGGCTGTATGCCGGTTTCCAATGAACTATTAATCTCCATCTTAACATCTGTGAGCTTGTTATTTGCCAGCCGAGTCTGCGGGAACCCCCATGGATTGATCCGCAAGTATGGTCTGATGTGCTGTAGGCAGTGCTTCCGTAGTAACGCCAAAGAAATTGGCTTCATTAAGGTAATT

mRNA sequence

ATGGGACATTCAAACGTGTGGAATTCACATCCAAAGAACTACGGACCCGGTTCTCGGACTTGCCGAGTCTGCGGGAACCCCCATGGATTGATCCGCAAGTATGGTCTGATGTGCTGTAGGCAGTGCTTCCGTAGTAACGCCAAAGAAATTGGCTTCATTAAGGTAATT

Coding sequence (CDS)

ATGGGACATTCAAACGTGTGGAATTCACATCCAAAGAACTACGGACCCGGTTCTCGGACTTGCCGAGTCTGCGGGAACCCCCATGGATTGATCCGCAAGTATGGTCTGATGTGCTGTAGGCAGTGCTTCCGTAGTAACGCCAAAGAAATTGGCTTCATTAAGGTAATT

Protein sequence

MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVI

Homology

[Close]

BLAST of MC11g0274 vs. ExPASy Swiss-Prot
Match: Q680P8 (40S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2)

HSP 1 Score: 116.7 bits (291), Expect = 8.5e-26
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

[Close]

BLAST of MC11g0274 vs. ExPASy Swiss-Prot
Match: Q5I7K3 (40S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.4e-25
Identity = 49/54 (90.74%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPKNYG GSR CRVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIK
Sbjct: 1  MGHSNVWNSHPKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIK 54

[Close]

BLAST of MC11g0274 vs. ExPASy Swiss-Prot
Match: Q7XYB0 (40S ribosomal protein S29 OS=Griffithsia japonica OX=83288 GN=RPS29 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.9e-19
Identity = 37/54 (68.52%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGH N+W SHP+ YG GSR+C++CGN HGLIRKY +  CRQCFR  AK+IGFIK
Sbjct: 1  MGHQNIWYSHPRKYGKGSRSCKICGNKHGLIRKYSMNICRQCFREYAKDIGFIK 54

[Close]

BLAST of MC11g0274 vs. ExPASy Swiss-Prot
Match: Q4PM47 (40S ribosomal protein S29 OS=Ixodes scapularis OX=6945 GN=RpS29 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.9e-18
Identity = 38/55 (69.09%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV 56
          MGH N+W SHP+ YGPGSR CRVC N HGLIRKYGL  CR+CFR  A +IGF K+
Sbjct: 1  MGHENIWYSHPRKYGPGSRYCRVCANHHGLIRKYGLNICRRCFRQYAADIGFKKL 55

[Close]

BLAST of MC11g0274 vs. ExPASy Swiss-Prot
Match: Q6F473 (40S ribosomal protein S29 OS=Plutella xylostella OX=51655 GN=RpS29 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 6.5e-18
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV 56
          MGH+N+W SHP+ YG GSR+CR C N HGLIRKYGL  CRQCFR  A +IGF K+
Sbjct: 1  MGHANIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKKL 55

[Close]

BLAST of MC11g0274 vs. NCBI nr
Match: OAY51010.1 (hypothetical protein MANES_05G180600v8 [Manihot esculenta])

HSP 1 Score: 127 bits (320), Expect = 3.19e-37
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV 55
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV 55

[Close]

BLAST of MC11g0274 vs. NCBI nr
Match: RXH87454.1 (hypothetical protein DVH24_034354 [Malus domestica])

HSP 1 Score: 127 bits (320), Expect = 3.36e-37
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVI 56
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK I
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKTI 56

[Close]

BLAST of MC11g0274 vs. NCBI nr
Match: KAG8632675.1 (hypothetical protein MANES_18G044866v8 [Manihot esculenta])

HSP 1 Score: 127 bits (320), Expect = 3.45e-37
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV 55
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV 55

[Close]

BLAST of MC11g0274 vs. NCBI nr
Match: TQE05330.1 (hypothetical protein C1H46_009023 [Malus baccata])

HSP 1 Score: 127 bits (320), Expect = 3.74e-37
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV 55
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV 55

[Close]

BLAST of MC11g0274 vs. NCBI nr
Match: KAG4907652.1 (hypothetical protein JHK86_056136 [Glycine max] >KAG5074954.1 hypothetical protein JHK84_056185 [Glycine max] >KAG5077611.1 hypothetical protein JHK82_056306 [Glycine max])

HSP 1 Score: 127 bits (320), Expect = 5.83e-37
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV 55
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV 55

[Close]

BLAST of MC11g0274 vs. ExPASy TrEMBL
Match: F6HXU9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g00970 PE=3 SV=1)

HSP 1 Score: 127 bits (320), Expect = 1.55e-37
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV 55
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV 55

[Close]

BLAST of MC11g0274 vs. ExPASy TrEMBL
Match: A0A2C9VZV0 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G180600 PE=3 SV=1)

HSP 1 Score: 127 bits (320), Expect = 1.55e-37
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV 55
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV 55

[Close]

BLAST of MC11g0274 vs. ExPASy TrEMBL
Match: A0A498IZC1 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_034354 PE=3 SV=1)

HSP 1 Score: 127 bits (320), Expect = 1.63e-37
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKVI 56
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK I
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKTI 56

[Close]

BLAST of MC11g0274 vs. ExPASy TrEMBL
Match: A0A540N498 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_009023 PE=3 SV=1)

HSP 1 Score: 127 bits (320), Expect = 1.81e-37
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV 55
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV 55

[Close]

BLAST of MC11g0274 vs. ExPASy TrEMBL
Match: A0A0S3T7T0 (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G248000 PE=3 SV=1)

HSP 1 Score: 127 bits (320), Expect = 3.56e-37
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV 55
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKV 55

[Close]

BLAST of MC11g0274 vs. TAIR 10
Match: AT3G43980.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 116.7 bits (291), Expect = 6.0e-27
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

[Close]

BLAST of MC11g0274 vs. TAIR 10
Match: AT3G44010.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 116.7 bits (291), Expect = 6.0e-27
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

[Close]

BLAST of MC11g0274 vs. TAIR 10
Match: AT4G33865.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 116.7 bits (291), Expect = 6.0e-27
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIK
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIK 54

The following BLAST results are available for this feature:

BLAST of MC11g0274 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q680P8	8.5e-26	92.59	40S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2	[more]
Q5I7K3	1.4e-25	90.74	40S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1	[more]
Q7XYB0	5.9e-19	68.52	40S ribosomal protein S29 OS=Griffithsia japonica OX=83288 GN=RPS29 PE=3 SV=1	[more]
Q4PM47	2.9e-18	69.09	40S ribosomal protein S29 OS=Ixodes scapularis OX=6945 GN=RpS29 PE=3 SV=1	[more]
Q6F473	6.5e-18	67.27	40S ribosomal protein S29 OS=Plutella xylostella OX=51655 GN=RpS29 PE=3 SV=1	[more]

BLAST of MC11g0274 vs. NCBI nr


Match Name	E-value	Identity	Description
OAY51010.1	3.19e-37	100.00	hypothetical protein MANES_05G180600v8 [Manihot esculenta]	[more]
RXH87454.1	3.36e-37	98.21	hypothetical protein DVH24_034354 [Malus domestica]	[more]
KAG8632675.1	3.45e-37	100.00	hypothetical protein MANES_18G044866v8 [Manihot esculenta]	[more]
TQE05330.1	3.74e-37	100.00	hypothetical protein C1H46_009023 [Malus baccata]	[more]
KAG4907652.1	5.83e-37	100.00	hypothetical protein JHK86_056136 [Glycine max] >KAG5074954.1 hypothetical prote...	[more]

BLAST of MC11g0274 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
F6HXU9	1.55e-37	100.00	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_09s0002g00970 PE=3 SV=...	[more]
A0A2C9VZV0	1.55e-37	100.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_05G180600 PE=3 SV=...	[more]
A0A498IZC1	1.63e-37	98.21	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_034354 PE=3 SV=1	[more]
A0A540N498	1.81e-37	100.00	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_009023 PE=3 SV=1	[more]
A0A0S3T7T0	3.56e-37	100.00	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G...	[more]

BLAST of MC11g0274 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G43980.1	6.0e-27	92.59	Ribosomal protein S14p/S29e family protein	[more]
AT3G44010.1	6.0e-27	92.59	Ribosomal protein S14p/S29e family protein	[more]
AT4G33865.1	6.0e-27	92.59	Ribosomal protein S14p/S29e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043140	Ribosomal protein S14/S29	GENE3D	4.10.830.10	30s Ribosomal Protein S14; Chain N	coord: 1..55 e-value: 1.4E-35 score: 122.9
IPR001209	Ribosomal protein S14	PFAM	PF00253	Ribosomal_S14	coord: 7..54 e-value: 9.8E-18 score: 63.6
None	No IPR available	PANTHER	PTHR12010:SF14	40S RIBOSOMAL PROTEIN S29	coord: 1..54
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 13..49
IPR039744	40S ribosomal protein S29/30S ribosomal protein S14 type Z	PANTHER	PTHR12010	40S RIBOSOMAL PROTEIN S29	coord: 1..54

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g0274.1	MC11g0274.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008270	zinc ion binding