MC11g0259 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0259
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	F-box protein GID2
Location	MC11: 2068085 .. 2068615 (-)
RNA-Seq Expression	MC11g0259
Synteny	MC11g0259

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCGAGTTCTTGGCGATGGTGATGGTGATGGTGATGGGGATCGGAAGAGTGGGAAGAAATCGAGGGCGGAGACGGCGGAAGATTCCGCTTCCGGGAAGTCTGGGTTTGTGAATTTGGATGATAATTTACTGTTCGAGGTGTTGAAGCATGTGGATGCGAGGACTCTGGCCATGGCGGCGTGCGTGAGCAAGCAGTGGCACAAAACGGCGGAGGACGAGCGGCTCTGGGAGCTGATCTGCACCAGGCACTGGGCCAACACCGGCTGCGGCAACCAGCAACTCCGATCTGTAGTTCTAGCCCTCGGCGGCTTCCGTCGTCTCCACTCCCTCTTCATCTGGCCTCTTACAAAACCCCAATCGTCGGCCGCCGCCCCTTCATCCCCGGCCTCCTCTTCCTCTTGGTCTCCGTTTCCGGCGATGATTGGGTCGAAGCCGCCGGCCCGCTGGGGAAAGGACGAGGTCCATCTCTCGCTCTCCCTCCTCTCAATTCGGTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGA

mRNA sequence

ATGAAGCGAGTTCTTGGCGATGGTGATGGTGATGGTGATGGGGATCGGAAGAGTGGGAAGAAATCGAGGGCGGAGACGGCGGAAGATTCCGCTTCCGGGAAGTCTGGGTTTGTGAATTTGGATGATAATTTACTGTTCGAGGTGTTGAAGCATGTGGATGCGAGGACTCTGGCCATGGCGGCGTGCGTGAGCAAGCAGTGGCACAAAACGGCGGAGGACGAGCGGCTCTGGGAGCTGATCTGCACCAGGCACTGGGCCAACACCGGCTGCGGCAACCAGCAACTCCGATCTGTAGTTCTAGCCCTCGGCGGCTTCCGTCGTCTCCACTCCCTCTTCATCTGGCCTCTTACAAAACCCCAATCGTCGGCCGCCGCCCCTTCATCCCCGGCCTCCTCTTCCTCTTGGTCTCCGTTTCCGGCGATGATTGGGTCGAAGCCGCCGGCCCGCTGGGGAAAGGACGAGGTCCATCTCTCGCTCTCCCTCCTCTCAATTCGGTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGA

Coding sequence (CDS)

ATGAAGCGAGTTCTTGGCGATGGTGATGGTGATGGTGATGGGGATCGGAAGAGTGGGAAGAAATCGAGGGCGGAGACGGCGGAAGATTCCGCTTCCGGGAAGTCTGGGTTTGTGAATTTGGATGATAATTTACTGTTCGAGGTGTTGAAGCATGTGGATGCGAGGACTCTGGCCATGGCGGCGTGCGTGAGCAAGCAGTGGCACAAAACGGCGGAGGACGAGCGGCTCTGGGAGCTGATCTGCACCAGGCACTGGGCCAACACCGGCTGCGGCAACCAGCAACTCCGATCTGTAGTTCTAGCCCTCGGCGGCTTCCGTCGTCTCCACTCCCTCTTCATCTGGCCTCTTACAAAACCCCAATCGTCGGCCGCCGCCCCTTCATCCCCGGCCTCCTCTTCCTCTTGGTCTCCGTTTCCGGCGATGATTGGGTCGAAGCCGCCGGCCCGCTGGGGAAAGGACGAGGTCCATCTCTCGCTCTCCCTCCTCTCAATTCGGTACTACGAGAAGATGAATTTCAGCAACAGAGGCAGA

Protein sequence

MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR

Homology

[Close]

BLAST of MC11g0259 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 3.8e-48
Identity = 100/175 (57.14%), Postives = 120/175 (68.57%), Query Frame = 0


Query: 1   MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMA 60
           MKR   D D  GD   ++ KK ++   E+      GF NLD+NL++EVLKHVDA+TLAM+
Sbjct: 1   MKRSTTDSDLAGDAHNETNKKMKSTEEEE-----IGFSNLDENLVYEVLKHVDAKTLAMS 60

Query: 61  ACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQ 120
           +CVSK WHKTA+DERLWELICTRHW N GCG  QLRSVVLALGGFRRLHSL++WPL+KP 
Sbjct: 61  SCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWPLSKP- 120

Query: 121 SSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR 176
                                    P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Sbjct: 121 ------------------------NPRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

[Close]

BLAST of MC11g0259 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.4e-26
Identity = 78/188 (41.49%), Postives = 102/188 (54.26%), Query Frame = 0


Query: 6   GDGDGDGDGDRK------SGKKSRAETA----------------EDSASGKSGFV-NLDD 65
           GDG G GD   K      S   S+ E +                ED+  G+   V +L +
Sbjct: 19  GDGGGGGDEPAKRQRTDPSSSSSQGEASSSSQPPPQQQQEEQPPEDAGEGEQPRVPDLGE 78

Query: 66  NLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLAL 125
           +L+FEVL+  +ARTLA AACVS+ W + AEDERLWE  C R WAN G   +QLR+VVL+L
Sbjct: 79  DLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWANLGFSERQLRAVVLSL 138

Query: 126 GGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLL 171
           GGFRRLH+++I PL      A  P                  +PP R G+D+V LSLSL 
Sbjct: 139 GGFRRLHAVYIRPL--QWRGAGVPRQQGR------------RQPPVRLGRDQVQLSLSLF 192

[Close]

BLAST of MC11g0259 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.2e-11
Identity = 41/133 (30.83%), Postives = 65/133 (48.87%), Query Frame = 0


Query: 38  VNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS 97
           +N   ++L E+L+ +D  +L  AACV + W   A ++ +WE +C R  +     +  LRS
Sbjct: 28  INDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRS 87

Query: 98  VVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHL 157
           VV ALGG+R L+ L I P                         ++   P   W +D++ L
Sbjct: 88  VVSALGGYRCLYFLCIRP-------------------------VLARLPKLLWTRDQLQL 133

Query: 158 SLSLLSIRYYEKM 171
           SLSL  + YYE++
Sbjct: 148 SLSLYCVHYYERL 133

[Close]

BLAST of MC11g0259 vs. NCBI nr
Match: XP_022151668.1 (F-box protein GID2 [Momordica charantia])

HSP 1 Score: 356 bits (914), Expect = 5.41e-124
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMA 60
           MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMA
Sbjct: 1   MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMA 60

Query: 61  ACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQ 120
           ACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQ
Sbjct: 61  ACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQ 120

Query: 121 SSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR 177
           SSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Sbjct: 121 SSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR 177

[Close]

BLAST of MC11g0259 vs. NCBI nr
Match: XP_038900230.1 (F-box protein GID2 [Benincasa hispida])

HSP 1 Score: 294 bits (752), Expect = 3.32e-99
Identity = 151/185 (81.62%), Postives = 163/185 (88.11%), Query Frame = 0


Query: 1   MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASG----KSGFVNLDDNLLFEVLKHVDART 60
           MKRV+ DGDGD    RK+GKK RAET + +  G    ++GF+NLDDNLLFEV KHVDART
Sbjct: 1   MKRVVPDGDGD----RKTGKKPRAETQDCAGGGDPSDRTGFMNLDDNLLFEVFKHVDART 60

Query: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120
           LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL
Sbjct: 61  LAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPL 120

Query: 121 TKPQSSAAAPS-----SPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN 176
           TKPQSS+++ S     S +SS+SWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN
Sbjct: 121 TKPQSSSSSSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMN 180

[Close]

BLAST of MC11g0259 vs. NCBI nr
Match: XP_011654137.1 (F-box protein GID2 [Cucumis sativus] >KGN55239.1 hypothetical protein Csa_012230 [Cucumis sativus])

HSP 1 Score: 290 bits (742), Expect = 1.41e-97
Identity = 152/194 (78.35%), Postives = 162/194 (83.51%), Query Frame = 0


Query: 1   MKRVLGDGDGDGDGDRKSGKKSRAETAE-------DSASGKSGFVNLDDNLLFEVLKHVD 60
           MKRV+ DG GD    RK GKK +AET +       +  S K+GF+NLDDNLLFEV KHVD
Sbjct: 1   MKRVVPDGVGD----RKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVD 60

Query: 61  ARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFI 120
           ARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFI
Sbjct: 61  ARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFI 120

Query: 121 WPLTKPQSSAAAPSSPASSSS----------WSPFPAMIGSKPPARWGKDEVHLSLSLLS 177
           WPLTKPQSS+++ SS +SSSS          WSPFPAMIGSKPPARWGKDEVHLSLSLLS
Sbjct: 121 WPLTKPQSSSSSSSSSSSSSSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLS 180

[Close]

BLAST of MC11g0259 vs. NCBI nr
Match: XP_008452610.1 (PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0064421.1 F-box protein GID2-like [Cucumis melo var. makuwa] >TYK20166.1 F-box protein GID2-like [Cucumis melo var. makuwa])

HSP 1 Score: 290 bits (741), Expect = 2.00e-97
Identity = 151/194 (77.84%), Postives = 162/194 (83.51%), Query Frame = 0


Query: 1   MKRVLGDGDGDGDGDRKSGKKSRAETAE------DSASGKSGFVNLDDNLLFEVLKHVDA 60
           MKRV+ DG GD    RK GKK +AET +      +  S K+GF+NLDDNLLFEV KHVDA
Sbjct: 1   MKRVVSDGVGD----RKMGKKPKAETQDFTRGGGEDCSDKTGFMNLDDNLLFEVFKHVDA 60

Query: 61  RTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIW 120
           RTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIW
Sbjct: 61  RTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIW 120

Query: 121 PLTKPQSSAAAPSSPA-----------SSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLS 177
           PLTKPQSS+++ SS +           SS+SWSPFPAMIGSKPPARWGKDEVHLSLSLLS
Sbjct: 121 PLTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLS 180

[Close]

BLAST of MC11g0259 vs. NCBI nr
Match: XP_022937325.1 (F-box protein GID2-like [Cucurbita moschata] >XP_022937326.1 F-box protein GID2-like [Cucurbita moschata])

HSP 1 Score: 287 bits (734), Expect = 1.49e-96
Identity = 149/181 (82.32%), Postives = 160/181 (88.40%), Query Frame = 0


Query: 1   MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASG---KSGFVNLDDNLLFEVLKHVDARTL 60
           MKRV+ +G GD    RK+ KK RA + +    G   K+GF+NLDDNLLFEV KHVDARTL
Sbjct: 1   MKRVVPEGKGD----RKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTL 60

Query: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120
           AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT
Sbjct: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120

Query: 121 KPQSSAAAPSSPASSSS-WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG 177
           KPQSS+++ SS ASSSS WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RG
Sbjct: 121 KPQSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRG 177

[Close]

BLAST of MC11g0259 vs. ExPASy TrEMBL
Match: A0A6J1DCV3 (F-box protein GID2 OS=Momordica charantia OX=3673 GN=LOC111019550 PE=4 SV=1)

HSP 1 Score: 356 bits (914), Expect = 2.62e-124
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0


Query: 1   MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMA 60
           MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMA
Sbjct: 1   MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMA 60

Query: 61  ACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQ 120
           ACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQ
Sbjct: 61  ACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQ 120

Query: 121 SSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR 177
           SSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR
Sbjct: 121 SSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRGR 177

[Close]

BLAST of MC11g0259 vs. ExPASy TrEMBL
Match: A0A0A0L2H5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 SV=1)

HSP 1 Score: 290 bits (742), Expect = 6.83e-98
Identity = 152/194 (78.35%), Postives = 162/194 (83.51%), Query Frame = 0


Query: 1   MKRVLGDGDGDGDGDRKSGKKSRAETAE-------DSASGKSGFVNLDDNLLFEVLKHVD 60
           MKRV+ DG GD    RK GKK +AET +       +  S K+GF+NLDDNLLFEV KHVD
Sbjct: 1   MKRVVPDGVGD----RKMGKKPKAETQDFTRGGGGEDCSDKTGFMNLDDNLLFEVFKHVD 60

Query: 61  ARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFI 120
           ARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFI
Sbjct: 61  ARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFI 120

Query: 121 WPLTKPQSSAAAPSSPASSSS----------WSPFPAMIGSKPPARWGKDEVHLSLSLLS 177
           WPLTKPQSS+++ SS +SSSS          WSPFPAMIGSKPPARWGKDEVHLSLSLLS
Sbjct: 121 WPLTKPQSSSSSSSSSSSSSSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLS 180

[Close]

BLAST of MC11g0259 vs. ExPASy TrEMBL
Match: A0A5A7VFE5 (F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G002980 PE=4 SV=1)

HSP 1 Score: 290 bits (741), Expect = 9.69e-98
Identity = 151/194 (77.84%), Postives = 162/194 (83.51%), Query Frame = 0


Query: 1   MKRVLGDGDGDGDGDRKSGKKSRAETAE------DSASGKSGFVNLDDNLLFEVLKHVDA 60
           MKRV+ DG GD    RK GKK +AET +      +  S K+GF+NLDDNLLFEV KHVDA
Sbjct: 1   MKRVVSDGVGD----RKMGKKPKAETQDFTRGGGEDCSDKTGFMNLDDNLLFEVFKHVDA 60

Query: 61  RTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIW 120
           RTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIW
Sbjct: 61  RTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIW 120

Query: 121 PLTKPQSSAAAPSSPA-----------SSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLS 177
           PLTKPQSS+++ SS +           SS+SWSPFPAMIGSKPPARWGKDEVHLSLSLLS
Sbjct: 121 PLTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLS 180

[Close]

BLAST of MC11g0259 vs. ExPASy TrEMBL
Match: A0A1S3BV18 (F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103493580 PE=4 SV=1)

HSP 1 Score: 290 bits (741), Expect = 9.69e-98
Identity = 151/194 (77.84%), Postives = 162/194 (83.51%), Query Frame = 0


Query: 1   MKRVLGDGDGDGDGDRKSGKKSRAETAE------DSASGKSGFVNLDDNLLFEVLKHVDA 60
           MKRV+ DG GD    RK GKK +AET +      +  S K+GF+NLDDNLLFEV KHVDA
Sbjct: 1   MKRVVSDGVGD----RKMGKKPKAETQDFTRGGGEDCSDKTGFMNLDDNLLFEVFKHVDA 60

Query: 61  RTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIW 120
           RTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIW
Sbjct: 61  RTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIW 120

Query: 121 PLTKPQSSAAAPSSPA-----------SSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLS 177
           PLTKPQSS+++ SS +           SS+SWSPFPAMIGSKPPARWGKDEVHLSLSLLS
Sbjct: 121 PLTKPQSSSSSSSSSSPSSTSSSASSSSSASWSPFPAMIGSKPPARWGKDEVHLSLSLLS 180

[Close]

BLAST of MC11g0259 vs. ExPASy TrEMBL
Match: A0A6J1FA22 (F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1)

HSP 1 Score: 287 bits (734), Expect = 7.22e-97
Identity = 149/181 (82.32%), Postives = 160/181 (88.40%), Query Frame = 0


Query: 1   MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASG---KSGFVNLDDNLLFEVLKHVDARTL 60
           MKRV+ +G GD    RK+ KK RA + +    G   K+GF+NLDDNLLFEV KHVDARTL
Sbjct: 1   MKRVVPEGKGD----RKTEKKPRAVSHDCDGGGVSDKTGFMNLDDNLLFEVFKHVDARTL 60

Query: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120
           AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT
Sbjct: 61  AMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLT 120

Query: 121 KPQSSAAAPSSPASSSS-WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNRG 177
           KPQSS+++ SS ASSSS WSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFS+RG
Sbjct: 121 KPQSSSSSTSSSASSSSPWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSSRG 177

[Close]

BLAST of MC11g0259 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 192.6 bits (488), Expect = 2.7e-49
Identity = 100/175 (57.14%), Postives = 120/175 (68.57%), Query Frame = 0


Query: 1   MKRVLGDGDGDGDGDRKSGKKSRAETAEDSASGKSGFVNLDDNLLFEVLKHVDARTLAMA 60
           MKR   D D  GD   ++ KK ++   E+      GF NLD+NL++EVLKHVDA+TLAM+
Sbjct: 1   MKRSTTDSDLAGDAHNETNKKMKSTEEEE-----IGFSNLDENLVYEVLKHVDAKTLAMS 60

Query: 61  ACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQ 120
           +CVSK WHKTA+DERLWELICTRHW N GCG  QLRSVVLALGGFRRLHSL++WPL+KP 
Sbjct: 61  SCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSVVLALGGFRRLHSLYLWPLSKP- 120

Query: 121 SSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHLSLSLLSIRYYEKMNFSNR 176
                                    P AR+GKDE+ L+LSLLSIRYYEKM+F+ R
Sbjct: 121 ------------------------NPRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

[Close]

BLAST of MC11g0259 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.6e-12
Identity = 41/133 (30.83%), Postives = 65/133 (48.87%), Query Frame = 0


Query: 38  VNLDDNLLFEVLKHVDARTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS 97
           +N   ++L E+L+ +D  +L  AACV + W   A ++ +WE +C R  +     +  LRS
Sbjct: 28  INDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEELCFRQVSPR--PSLSLRS 87

Query: 98  VVLALGGFRRLHSLFIWPLTKPQSSAAAPSSPASSSSWSPFPAMIGSKPPARWGKDEVHL 157
           VV ALGG+R L+ L I P                         ++   P   W +D++ L
Sbjct: 88  VVSALGGYRCLYFLCIRP-------------------------VLARLPKLLWTRDQLQL 133

Query: 158 SLSLLSIRYYEKM 171
           SLSL  + YYE++
Sbjct: 148 SLSLYCVHYYERL 133

The following BLAST results are available for this feature:

BLAST of MC11g0259 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STX3	3.8e-48	57.14	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	2.4e-26	41.49	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]
Q9LUB6	2.2e-11	30.83	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]

BLAST of MC11g0259 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151668.1	5.41e-124	100.00	F-box protein GID2 [Momordica charantia]	[more]
XP_038900230.1	3.32e-99	81.62	F-box protein GID2 [Benincasa hispida]	[more]
XP_011654137.1	1.41e-97	78.35	F-box protein GID2 [Cucumis sativus] >KGN55239.1 hypothetical protein Csa_012230...	[more]
XP_008452610.1	2.00e-97	77.84	PREDICTED: F-box protein GID2-like [Cucumis melo] >KAA0064421.1 F-box protein GI...	[more]
XP_022937325.1	1.49e-96	82.32	F-box protein GID2-like [Cucurbita moschata] >XP_022937326.1 F-box protein GID2-...	[more]

BLAST of MC11g0259 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DCV3	2.62e-124	100.00	F-box protein GID2 OS=Momordica charantia OX=3673 GN=LOC111019550 PE=4 SV=1	[more]
A0A0A0L2H5	6.83e-98	78.35	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G641710 PE=4 ...	[more]
A0A5A7VFE5	9.69e-98	77.84	F-box protein GID2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BV18	9.69e-98	77.84	F-box protein GID2-like OS=Cucumis melo OX=3656 GN=LOC103493580 PE=4 SV=1	[more]
A0A6J1FA22	7.22e-97	82.32	F-box protein GID2-like OS=Cucurbita moschata OX=3662 GN=LOC111443649 PE=4 SV=1	[more]

BLAST of MC11g0259 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24210.1	2.7e-49	57.14	F-box family protein	[more]
AT5G48170.1	1.6e-12	30.83	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 40..80 e-value: 0.0058 score: 25.8
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 39..81 e-value: 1.5E-7 score: 31.1
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 34..80 score: 9.153042
None	No IPR available	GENE3D	1.20.1280.50		coord: 26..136 e-value: 8.8E-12 score: 46.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR12874:SF22	F-BOX PROTEIN GID2-LIKE	coord: 1..172
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 1..172
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 32..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g0259.1	MC11g0259.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0009845	seed germination
cellular_component	GO:0005634	nucleus
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding