MC11g0238 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0238
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	protein ROOT INITIATION DEFECTIVE 3
Location	MC11: 1883237 .. 1884984 (-)
RNA-Seq Expression	MC11g0238
Synteny	MC11g0238

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGGGTAGACTGCTAATTAAGAAATGGCATGCTCATTATAGGGCAGTTACTTGCCTGGTATTCTCTGAAGATGACTCCCTTTTAATTTCCGGTTCTGAAGATGGCTGTGTTAGAATTTGGCCTCTTATAACGTAAAAATTTCATCCTTCCGTCATGTGTATTTGTTTAGAGTTTATTGTCACTAATTGAAATTATTCTTACGACCATGTGTATAACAGGGTATTTGATGACGGCTGGCAAAGGGAAGCAAAACATTTATATGAACATAGTTTCACCCAGCACAATCTGCCTATTACTGATATTGTTGTTGTAGGTTTTGGAGGAGGATCCAATGCTATTATAATCTTTTCCTCCGTGGATCAGACTTGTAAGGTTTGTCACTCTAAAGGATTTCTATGTTGATAATATAAATAATTTTATGATGATTTGGCTGTGTGAAACCATAGTTTTGAGGAGGGTGTTCCTACCATCTCGTATATGTGGGTTTCTTTATGGATCTTAGAATATCGAATTAATCAGTTTTGGAATCTCTCAGCTGGATTTTAATTTATTTCCATGTGCTAGTTAAGTCCATAAACTTTGCCTTTGGTGAATTGCCCTGATCCGTAGATTTTAATATTTTTAATAGCAATGTGGGACATATGAAACATCTACAAACACAATTACTCCAAGTGCAAACACAAATTTAAAAACAAATGGTGTAAGTGTGCTTTATTATGATCTAAATGATAACTAGACGTGTTGAGCTACTAAAATTTGTGGGCTTGACATTGATGGTCATTGAAGAAAAATTTGAGAATTTTTTTCTATACTCAACAGTGTCACTGTTCCCTCCGAAAATTCCTGAGACAGTTAAAGAGATCCTATTTGATTAGCATTTGTTTTGAAACTACTGTGAGTATAAAACCTTTCTCTTGTTCAATGATTAGCAAGTTGAGAACTCCTTACGTGTGCTAAAAAAGAGCTGTTGCTGACACTGCATGATAAACGTTTCCTAGCTACTGTATTCAGCTTTTGATTACTATGTCCATGACTTGAATTTTTATTTCATTATCTGAATGCAAATGCACCGGTGATCCATACTGTTGTGCAGGCCTTGTAAATAATATACTTATCGTTAGAGAACAGCTTCTCCCTAAATCGCAGATAAATTATTATACATCTCAAGGATCCTTGAGAAAGCATCGCTCACTATTATCTCCCGCCTTTGCAAATTTTGAAAATTTGAAGGACGAGGATGAAGACACCAGCGTTATCATTGGTCTATCAGAAGAATTTATGGATTCTTCCGGTTAAGGATCCTATATTGATAAAGAAGAGATCTTACATAAATTTATGATAGACATGGGTTACTCCTCTCATTGTTAATTGGTTTTGAGATGGAATGCATGAATATTAATACTTACCCTCGCACACCTACTTGTCACTTGATGGAGAACCAAATTCTCGCTAACTACTCAATAATGTTAATAATATGCTGTATTCCTTATTGTTCTGGCATACATAACATTTTGTGATAACATATGTTCTTCTACACATCTCTAAAACTTCTATTAACATGTGGTTTCGCTACTTCAGCAACAGGGTTCTGCTGCCACAGGAGTGGAGTTGGAAAGACTAAAGCGCGATTATGGAAAATCCATGAAAATGCTAAGCACTGGAGAAAAATGTACGACAATTTACATCAATTTTGTGTAAACGAGCTTCTGGATGTCGATCAAACGTTAAATATTGATGGCAATTCCACG

mRNA sequence

GCGGGTAGACTGCTAATTAAGAAATGGCATGCTCATTATAGGGCAGTTACTTGCCTGGTATTCTCTGAAGATGACTCCCTTTTAATTTCCGGTTCTGAAGATGGCTGTGTTAGAATTTGGCCTCTTATAACGGTATTTGATGACGGCTGGCAAAGGGAAGCAAAACATTTATATGAACATAGTTTCACCCAGCACAATCTGCCTATTACTGATATTGTTGTTGTAGGTTTTGGAGGAGGATCCAATGCTATTATAATCTTTTCCTCCGTGGATCAGACTTGTAAGGTTTGTCACTCTAAAGGATTTCTATGTAATATAAATAATTTTATGATGATTTGGCTGTGTGAAACCATAGTTTTGAGGAGGGTGTTCCTACCATCTCCTTTTGATTACTATGTCCATGACTTGAATATTTCATTATCTGAATGCAAATGCACCGGTGATCCATACTGTTGTGCAGGCCTTGTAAATAATATACTTATCGTTAGAGAACAGCTTCTCCCTAAATCGCAGATAAATTATTATACATCTCAAGGATCCTTGAGAAAGCATCGCTCACTATTATCTCCCGCCTTTGCAAATTTTGAAAATTTGAAGGACGAGGATGAAGACACCAGCGTTATCATTGGTCTATCAGAAGAATTTATGGATTCTTCCGTTTCGCTACTTCAGCAACAGGGTTCTGCTGCCACAGGAGTGGAGTTGGAAAGACTAAAGCGCGATTATGGAAAATCCATGAAAATGCTACACTGGAGAAAAATGTACGACAATTTACATCAATTTTGTGTAAACGAGCTTCTGGATGTCGATCAAACGTTAAATATTGATGGCAATTCCACG

Coding sequence (CDS)

GCGGGTAGACTGCTAATTAAGAAATGGCATGCTCATTATAGGGCAGTTACTTGCCTGGTATTCTCTGAAGATGACTCCCTTTTAATTTCCGGTTCTGAAGATGGCTGTGTTAGAATTTGGCCTCTTATAACGGTATTTGATGACGGCTGGCAAAGGGAAGCAAAACATTTATATGAACATAGTTTCACCCAGCACAATCTGCCTATTACTGATATTGTTGTTGTAGGTTTTGGAGGAGGATCCAATGCTATTATAATCTTTTCCTCCGTGGATCAGACTTGTAAGGTTTGTCACTCTAAAGGATTTCTATGTAATATAAATAATTTTATGATGATTTGGCTGTGTGAAACCATAGTTTTGAGGAGGGTGTTCCTACCATCTCCTTTTGATTACTATGTCCATGACTTGAATATTTCATTATCTGAATGCAAATGCACCGGTGATCCATACTGTTGTGCAGGCCTTGTAAATAATATACTTATCGTTAGAGAACAGCTTCTCCCTAAATCGCAGATAAATTATTATACATCTCAAGGATCCTTGAGAAAGCATCGCTCACTATTATCTCCCGCCTTTGCAAATTTTGAAAATTTGAAGGACGAGGATGAAGACACCAGCGTTATCATTGGTCTATCAGAAGAATTTATGGATTCTTCCGTTTCGCTACTTCAGCAACAGGGTTCTGCTGCCACAGGAGTGGAGTTGGAAAGACTAAAGCGCGATTATGGAAAATCCATGAAAATGCTACACTGGAGAAAAATGTACGACAATTTACATCAATTTTGTGTAAACGAGCTTCTGGATGTCGATCAAACGTTAAATATTGATGGCAATTCCACG

Protein sequence

AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCHSKGFLCNINNFMMIWLCETIVLRRVFLPSPFDYYVHDLNISLSECKCTGDPYCCAGLVNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPAFANFENLKDEDEDTSVIIGLSEEFMDSSVSLLQQQGSAATGVELERLKRDYGKSMKMLHWRKMYDNLHQFCVNELLDVDQTLNIDGNST

Homology

[Close]

BLAST of MC11g0238 vs. ExPASy Swiss-Prot
Match: Q9M3B4 (Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.7e-38
Identity = 114/328 (34.76%), Postives = 161/328 (49.09%), Query Frame = 0


Query: 5   LIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQ 64
           L+KKWH HYR+VTCLVFS DDSLL+SGS+DG +R+W LI +FDD  +++   LYEH+F +
Sbjct: 112 LLKKWHGHYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNE 171

Query: 65  HNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-SKGFLCNINNFMMIWLCETIVLRR- 124
           H + +TDIV+    GG NA+II SS D+TCKV   S+G L  + N +   +   + L   
Sbjct: 172 HTMSVTDIVI--DYGGCNAVIISSSEDRTCKVWSLSRGKL--LKNIIFPSVINALALDPG 231

Query: 125 --VFLPSPFD--------------------------------YYVHDLNISLSECK---- 184
             VF     D                                 Y  D N+ +S  +    
Sbjct: 232 GCVFYAGARDSKIYIGAINATSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVV 291

Query: 185 CTGDPYCC-------------AGLVNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPA 244
           C  DP                 G VNNI IVR+ ++  S      +Q S +   +L+ P 
Sbjct: 292 CVWDPKSLRHVRTLIHAKGSRKGPVNNIQIVRKTIVANSN----KTQVSWKSRGALIPPP 351

Query: 245 FANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVELERL 266
              +E   ++  D  V +              LS + +D  V  LQQQGSAAT +E+ERL
Sbjct: 352 LEKYERPVEDTMDGIVTVDPPPFSDVPVYSSFLSADLIDEQVKELQQQGSAATEMEMERL 411

[Close]

BLAST of MC11g0238 vs. ExPASy Swiss-Prot
Match: A0A1L8HX76 (WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-09
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 10  HAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQHNLPI 69
           ++HY+ VTCL F++D S +ISG++D  V +W L +V      R  +  Y   +++H+LPI
Sbjct: 118 NSHYQDVTCLTFTDDSSHIISGAKDSLVLVWGLYSVLQVETSRGPEPRY--VWSRHSLPI 177

Query: 70  TDIVVVGFGGGSNAIIIFSSVDQTCKV 97
           TD V  G  GG  A +  SS+DQT K+
Sbjct: 178 TD-VQCGI-GGPQARVATSSLDQTIKL 200

[Close]

BLAST of MC11g0238 vs. ExPASy Swiss-Prot
Match: Q6BMP5 (Pre-rRNA-processing protein IPI3 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=IPI3 PE=3 SV=2)

HSP 1 Score: 58.9 bits (141), Expect = 1.0e-07
Identity = 34/99 (34.34%), Postives = 53/99 (53.54%), Query Frame = 0


Query: 1   AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIW---PLITVFDDGWQREAKHL 60
           +G LL  K  AHY+A+T + FS+  + L+SGS D    +W    LI+V++   +      
Sbjct: 137 SGNLLCVK-EAHYQAITAIKFSQCGTFLVSGSSDARCMVWRTSDLISVYNKDEESSINIK 196

Query: 61  YEHSFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKV 97
              SFT H+LPITD+ +   G  S+  +   S D T ++
Sbjct: 197 PFASFTDHSLPITDLAISEAGIISDLRLYTVSRDSTLRI 234

[Close]

BLAST of MC11g0238 vs. ExPASy Swiss-Prot
Match: Q4PHV3 (Pre-rRNA-processing protein IPI3 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=237631 GN=IPI3 PE=3 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.1e-04
Identity = 30/99 (30.30%), Postives = 50/99 (50.51%), Query Frame = 0


Query: 5   LIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAK-HLYEH--- 64
           L+  + AHYR+VT L ++ D + L++GSED  + +W L  +     Q  +     EH   
Sbjct: 137 LLASFDAHYRSVTVLKWTCDGAGLLTGSEDARILVWSLAGLLAPHDQTSSSITSSEHNPA 196

Query: 65  ---SFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKV 97
              +   HNL ITD+ +        A+++ SS D + K+
Sbjct: 197 PYCTLADHNLAITDLDISSGRFPHQAMVLSSSSDASVKL 235

[Close]

BLAST of MC11g0238 vs. NCBI nr
Match: XP_038898957.1 (protein ROOT INITIATION DEFECTIVE 3 [Benincasa hispida])

HSP 1 Score: 325 bits (832), Expect = 7.83e-106
Identity = 198/346 (57.23%), Postives = 221/346 (63.87%), Query Frame = 0


Query: 1   AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEH 60
           +GRLL KKWHAHYRAVTCLVFSEDDSLLISGSEDGC+R+W L+TVFDDGWQREAKHLYEH
Sbjct: 109 SGRLL-KKWHAHYRAVTCLVFSEDDSLLISGSEDGCIRVWALLTVFDDGWQREAKHLYEH 168

Query: 61  SFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-SKGFLCNINNFMMIWLCETIV 120
           SFT HNLP+TDIVV G+GG SNAIII SSVD+TCKV   SKG L  + N +   + + I 
Sbjct: 169 SFTGHNLPVTDIVV-GYGG-SNAIIISSSVDRTCKVWSLSKGKL--LRNIIFPSIIDVIA 228

Query: 121 L---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL--- 180
           L     VF                  PS  DY +H L    ++ K  T   YC +G    
Sbjct: 229 LDPGEHVFYGGGRDGKIYTAALNAKCPSTGDYGLHILGSLSNQSKSVTALAYCSSGNLLI 288

Query: 181 ----------------------------VNNILIVREQLLPKSQINYYTSQGSLRKHRSL 240
                                       VNNIL+VR+Q+LPKSQ    TSQG LRKHRSL
Sbjct: 289 SGSEDGAIRVWDTRTNNVIRVFRHSKGPVNNILLVRQQVLPKSQS---TSQGFLRKHRSL 348

Query: 241 LSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE 279
           L PA A FEN KDEDEDT VIIG             LS   MD+ ++ LQQQGSAA G+E
Sbjct: 349 LPPALAKFENSKDEDEDTGVIIGPTGLPKESMGFPALSSHVMDNQITELQQQGSAANGME 408

[Close]

BLAST of MC11g0238 vs. NCBI nr
Match: KGN55205.1 (hypothetical protein Csa_012375 [Cucumis sativus])

HSP 1 Score: 319 bits (818), Expect = 1.02e-103
Identity = 196/347 (56.48%), Postives = 219/347 (63.11%), Query Frame = 0


Query: 1   AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEH 60
           +GRLL KKWHAHYRAVTCLVFSEDDSLL+SGSEDGC+R+W LITVFDDGWQREAKHLYEH
Sbjct: 109 SGRLL-KKWHAHYRAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEH 168

Query: 61  SFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-SKGFLCNINNFMMIWLCETIV 120
           SFT HNLP+TDIVV G+GG  NAIII SSVD+TCKV   SKG L  + N +   + + I 
Sbjct: 169 SFTGHNLPVTDIVV-GYGG-FNAIIISSSVDRTCKVWSLSKGKL--LRNIIFPSIIDAIA 228

Query: 121 L---RRVFL-----------------PSPFDYYVHDL-NISLSECKCTGDPYCCAGL--- 180
           L     VF                  PS  DY +H L +IS      T   YC +G    
Sbjct: 229 LDPGEHVFYGGGRDGKIYTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLI 288

Query: 181 ----------------------------VNNILIVREQLLPKSQINYYTSQGSLRKHRSL 240
                                       VNNIL+V++Q LPKSQ    TSQGSLRKHR L
Sbjct: 289 SGSEDGAIRVWDTRTNNVIRVFRHSKGPVNNILLVQQQPLPKSQS---TSQGSLRKHRPL 348

Query: 241 LSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE 280
           L PA A FEN KDEDE T VII              LS   MD  ++ LQQQGSAATG+E
Sbjct: 349 LPPALAKFENSKDEDEYTGVIIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGME 408

[Close]

BLAST of MC11g0238 vs. NCBI nr
Match: XP_011654116.2 (protein ROOT INITIATION DEFECTIVE 3 [Cucumis sativus])

HSP 1 Score: 319 bits (818), Expect = 6.44e-103
Identity = 196/347 (56.48%), Postives = 219/347 (63.11%), Query Frame = 0


Query: 1   AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEH 60
           +GRLL KKWHAHYRAVTCLVFSEDDSLL+SGSEDGC+R+W LITVFDDGWQREAKHLYEH
Sbjct: 171 SGRLL-KKWHAHYRAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEH 230

Query: 61  SFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-SKGFLCNINNFMMIWLCETIV 120
           SFT HNLP+TDIVV G+GG  NAIII SSVD+TCKV   SKG L  + N +   + + I 
Sbjct: 231 SFTGHNLPVTDIVV-GYGG-FNAIIISSSVDRTCKVWSLSKGKL--LRNIIFPSIIDAIA 290

Query: 121 L---RRVFL-----------------PSPFDYYVHDL-NISLSECKCTGDPYCCAGL--- 180
           L     VF                  PS  DY +H L +IS      T   YC +G    
Sbjct: 291 LDPGEHVFYGGGRDGKIYTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLI 350

Query: 181 ----------------------------VNNILIVREQLLPKSQINYYTSQGSLRKHRSL 240
                                       VNNIL+V++Q LPKSQ    TSQGSLRKHR L
Sbjct: 351 SGSEDGAIRVWDTRTNNVIRVFRHSKGPVNNILLVQQQPLPKSQS---TSQGSLRKHRPL 410

Query: 241 LSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE 280
           L PA A FEN KDEDE T VII              LS   MD  ++ LQQQGSAATG+E
Sbjct: 411 LPPALAKFENSKDEDEYTGVIIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGME 470

[Close]

BLAST of MC11g0238 vs. NCBI nr
Match: XP_008452567.1 (PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo])

HSP 1 Score: 315 bits (808), Expect = 3.29e-102
Identity = 194/347 (55.91%), Postives = 219/347 (63.11%), Query Frame = 0


Query: 1   AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEH 60
           +GRLL KKWHAHYRAVTCLVFSEDDSLLISGSEDGC+R+W LITVFDDGWQREAKHLYEH
Sbjct: 109 SGRLL-KKWHAHYRAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEH 168

Query: 61  SFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-SKGFLCNINNFMMIWLCETIV 120
           SFT HNLP+TDIVV G+GG  NAIII SSVD+TCKV   SKG L  + N +   + + I 
Sbjct: 169 SFTGHNLPVTDIVV-GYGG-FNAIIISSSVDRTCKVWSLSKGKL--LRNIIFPSIIDAIA 228

Query: 121 L---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL--- 180
           L     VF                  PS  DY +H L    ++ K  T   YC +G    
Sbjct: 229 LDPGEHVFYGGGRDGKIYTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLI 288

Query: 181 ----------------------------VNNILIVREQLLPKSQINYYTSQGSLRKHRSL 240
                                       VNNIL+V++Q LPKSQ    TSQGSLRKHR +
Sbjct: 289 SGYEDGAIRVWDTRTNNVIRVFRHSKGPVNNILLVQQQPLPKSQS---TSQGSLRKHRPI 348

Query: 241 LSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE 280
           L PA A FEN KDEDE T VII              LS   MD+ ++ LQQQGSAAT +E
Sbjct: 349 LPPALAKFENSKDEDEYTGVIIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEME 408

[Close]

BLAST of MC11g0238 vs. NCBI nr
Match: XP_022941447.1 (protein ROOT INITIATION DEFECTIVE 3 [Cucurbita moschata] >KAG6608496.1 Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 311 bits (798), Expect = 9.43e-101
Identity = 188/339 (55.46%), Postives = 217/339 (64.01%), Query Frame = 0


Query: 1   AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEH 60
           +GRLL+K WHAHYRAVTCLVFSEDDSLLISGSEDGCVR+W L+ VFDDGWQRE+KHLYEH
Sbjct: 109 SGRLLMK-WHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEH 168

Query: 61  SFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-SKGFLCNINNFMMIWLCETIV 120
           SFT HNLP+TDIV+ G+GG SNAIII SSVD+TCKV   SKG L  + N +   + + I 
Sbjct: 169 SFTGHNLPVTDIVI-GYGG-SNAIIISSSVDRTCKVWSLSKGKL--LRNIIFPSIIDAIA 228

Query: 121 L---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL--- 180
           L     VF                  PS  DY +H L    ++ K  T   YC +G    
Sbjct: 229 LDPGEHVFYGGGRDGKIYTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLI 288

Query: 181 ----------------------------VNNILIVREQLLPKSQINYYTSQGSLRKHRSL 240
                                       VNN+LIVR+QLLP SQ+N  TSQGSLRKHRSL
Sbjct: 289 SGSEDGAIKVWDTRTNNIIRVLKHSKGPVNNLLIVRQQLLPTSQLNP-TSQGSLRKHRSL 348

Query: 241 LSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE 272
           L PA A F N KD+DEDT VIIG             +S   MD+ ++ LQQQGSAATG+E
Sbjct: 349 LPPALAKFGNSKDDDEDTGVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGME 408

[Close]

BLAST of MC11g0238 vs. ExPASy TrEMBL
Match: A0A0A0KZT0 (WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G639920 PE=4 SV=1)

HSP 1 Score: 319 bits (818), Expect = 4.93e-104
Identity = 196/347 (56.48%), Postives = 219/347 (63.11%), Query Frame = 0


Query: 1   AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEH 60
           +GRLL KKWHAHYRAVTCLVFSEDDSLL+SGSEDGC+R+W LITVFDDGWQREAKHLYEH
Sbjct: 109 SGRLL-KKWHAHYRAVTCLVFSEDDSLLVSGSEDGCIRVWSLITVFDDGWQREAKHLYEH 168

Query: 61  SFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-SKGFLCNINNFMMIWLCETIV 120
           SFT HNLP+TDIVV G+GG  NAIII SSVD+TCKV   SKG L  + N +   + + I 
Sbjct: 169 SFTGHNLPVTDIVV-GYGG-FNAIIISSSVDRTCKVWSLSKGKL--LRNIIFPSIIDAIA 228

Query: 121 L---RRVFL-----------------PSPFDYYVHDL-NISLSECKCTGDPYCCAGL--- 180
           L     VF                  PS  DY +H L +IS      T   YC +G    
Sbjct: 229 LDPGEHVFYGGGRDGKIYTAALNAKCPSSSDYGLHILGSISNQSKSVTSLAYCSSGNLLI 288

Query: 181 ----------------------------VNNILIVREQLLPKSQINYYTSQGSLRKHRSL 240
                                       VNNIL+V++Q LPKSQ    TSQGSLRKHR L
Sbjct: 289 SGSEDGAIRVWDTRTNNVIRVFRHSKGPVNNILLVQQQPLPKSQS---TSQGSLRKHRPL 348

Query: 241 LSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE 280
           L PA A FEN KDEDE T VII              LS   MD  ++ LQQQGSAATG+E
Sbjct: 349 LPPALAKFENSKDEDEYTGVIIDPSGPPKESTGFSFLSSHVMDDQITELQQQGSAATGME 408

[Close]

BLAST of MC11g0238 vs. ExPASy TrEMBL
Match: A0A1S3BU36 (protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo OX=3656 GN=LOC103493552 PE=4 SV=1)

HSP 1 Score: 315 bits (808), Expect = 1.59e-102
Identity = 194/347 (55.91%), Postives = 219/347 (63.11%), Query Frame = 0


Query: 1   AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEH 60
           +GRLL KKWHAHYRAVTCLVFSEDDSLLISGSEDGC+R+W LITVFDDGWQREAKHLYEH
Sbjct: 109 SGRLL-KKWHAHYRAVTCLVFSEDDSLLISGSEDGCIRVWSLITVFDDGWQREAKHLYEH 168

Query: 61  SFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-SKGFLCNINNFMMIWLCETIV 120
           SFT HNLP+TDIVV G+GG  NAIII SSVD+TCKV   SKG L  + N +   + + I 
Sbjct: 169 SFTGHNLPVTDIVV-GYGG-FNAIIISSSVDRTCKVWSLSKGKL--LRNIIFPSIIDAIA 228

Query: 121 L---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL--- 180
           L     VF                  PS  DY +H L    ++ K  T   YC +G    
Sbjct: 229 LDPGEHVFYGGGRDGKIYTAALNAKCPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLI 288

Query: 181 ----------------------------VNNILIVREQLLPKSQINYYTSQGSLRKHRSL 240
                                       VNNIL+V++Q LPKSQ    TSQGSLRKHR +
Sbjct: 289 SGYEDGAIRVWDTRTNNVIRVFRHSKGPVNNILLVQQQPLPKSQS---TSQGSLRKHRPI 348

Query: 241 LSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE 280
           L PA A FEN KDEDE T VII              LS   MD+ ++ LQQQGSAAT +E
Sbjct: 349 LPPALAKFENSKDEDEYTGVIIDPSGPPKESMEFSFLSSHVMDNQITELQQQGSAATEME 408

[Close]

BLAST of MC11g0238 vs. ExPASy TrEMBL
Match: A0A6J1FMG7 (protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita moschata OX=3662 GN=LOC111446741 PE=4 SV=1)

HSP 1 Score: 311 bits (798), Expect = 4.57e-101
Identity = 188/339 (55.46%), Postives = 217/339 (64.01%), Query Frame = 0


Query: 1   AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEH 60
           +GRLL+K WHAHYRAVTCLVFSEDDSLLISGSEDGCVR+W L+ VFDDGWQRE+KHLYEH
Sbjct: 109 SGRLLMK-WHAHYRAVTCLVFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEH 168

Query: 61  SFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-SKGFLCNINNFMMIWLCETIV 120
           SFT HNLP+TDIV+ G+GG SNAIII SSVD+TCKV   SKG L  + N +   + + I 
Sbjct: 169 SFTGHNLPVTDIVI-GYGG-SNAIIISSSVDRTCKVWSLSKGKL--LRNIIFPSIIDAIA 228

Query: 121 L---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL--- 180
           L     VF                  PS  DY +H L    ++ K  T   YC +G    
Sbjct: 229 LDPGEHVFYGGGRDGKIYTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLI 288

Query: 181 ----------------------------VNNILIVREQLLPKSQINYYTSQGSLRKHRSL 240
                                       VNN+LIVR+QLLP SQ+N  TSQGSLRKHRSL
Sbjct: 289 SGSEDGAIKVWDTRTNNIIRVLKHSKGPVNNLLIVRQQLLPTSQLNP-TSQGSLRKHRSL 348

Query: 241 LSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE 272
           L PA A F N KD+DEDT VIIG             +S   MD+ ++ LQQQGSAATG+E
Sbjct: 349 LPPALAKFGNSKDDDEDTGVIIGRSGPPMESMGFSPISSHVMDNQITELQQQGSAATGME 408

[Close]

BLAST of MC11g0238 vs. ExPASy TrEMBL
Match: A0A6J1DDG0 (protein ROOT INITIATION DEFECTIVE 3-like OS=Momordica charantia OX=3673 GN=LOC111019080 PE=4 SV=1)

HSP 1 Score: 305 bits (782), Expect = 1.26e-98
Identity = 181/336 (53.87%), Postives = 217/336 (64.58%), Query Frame = 0


Query: 1   AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEH 60
           +GRLL KKWH HYRAVTC+VFSEDDSLLISGSEDGCVR+W L+TVFDDGWQREAKHLYEH
Sbjct: 109 SGRLL-KKWHGHYRAVTCVVFSEDDSLLISGSEDGCVRVWSLLTVFDDGWQREAKHLYEH 168

Query: 61  SFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-SKGFLCNINNFMMIWLCETIV 120
           SFT HNLPITDIVV G+GG SN+III SSVD+TCKV   SKG L  + N +   + + I 
Sbjct: 169 SFTGHNLPITDIVV-GYGG-SNSIIISSSVDRTCKVWSLSKGKL--LRNIIFPSIVDAIA 228

Query: 121 L---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL--- 180
           L     VF                  PS  DY +H L    ++ K  T   YC +G    
Sbjct: 229 LDPGEHVFYGGGRDGKIYTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCASGNLLI 288

Query: 181 ----------------------------VNNILIVREQLLPKSQINYYTSQGSLRKHRSL 240
                                       VNNI+IVR++++PK  IN  +SQGSLRKHRSL
Sbjct: 289 SGSEDGAIKVWDTRTNNIIRVLKHSKGPVNNIIIVRQRVIPKPLINS-SSQGSLRKHRSL 348

Query: 241 LSPAFANFENLKDEDEDTSVIIGLSEEFM-----------DSSVSLLQQQGSAATGVELE 271
           + P  A FEN KDEDEDT ++IG+S EFM           ++ ++ LQ+QG AATG+ELE
Sbjct: 349 VPPPLAKFENSKDEDEDTGIVIGVSGEFMGFSSPLTCDVMENQIAQLQKQGCAATGMELE 408

[Close]

BLAST of MC11g0238 vs. ExPASy TrEMBL
Match: A0A6J1IYT8 (protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita maxima OX=3661 GN=LOC111481134 PE=4 SV=1)

HSP 1 Score: 305 bits (780), Expect = 2.37e-98
Identity = 185/339 (54.57%), Postives = 214/339 (63.13%), Query Frame = 0


Query: 1   AGRLLIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEH 60
           +GRLL+K WHAHYRAVTCL FSEDDSLLISGSEDGCVR+W L+ VFDDGWQRE+KHLYEH
Sbjct: 109 SGRLLMK-WHAHYRAVTCLEFSEDDSLLISGSEDGCVRVWSLLKVFDDGWQRESKHLYEH 168

Query: 61  SFTQHNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-SKGFLCNINNFMMIWLCETIV 120
           SFT HNLP+TDIV+ G+GG SNAIII SSVD+TCKV   SKG L  + N +   + + I 
Sbjct: 169 SFTGHNLPVTDIVI-GYGG-SNAIIISSSVDRTCKVWSLSKGKL--LRNIIFPSIIDAIA 228

Query: 121 L---RRVFL-----------------PSPFDYYVHDLNISLSECKC-TGDPYCCAGL--- 180
           L     VF                  PS  DY +H L    ++ K  T   YC +G    
Sbjct: 229 LDPGEHVFYGGGRDGKIYTAALNAKSPSSSDYGLHILGSLSNQSKSVTSLAYCSSGNLLI 288

Query: 181 ----------------------------VNNILIVREQLLPKSQINYYTSQGSLRKHRSL 240
                                       VNN+LIV+ QLLP SQ+N  TSQGSLRKHRSL
Sbjct: 289 SGSEDGAIKVWDTRTNNIIRVLKHSKGPVNNLLIVQHQLLPTSQLNP-TSQGSLRKHRSL 348

Query: 241 LSPAFANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVE 272
           L PA A F N KD+DEDT VIIG             +S   MD  ++ LQQQGSAATG+E
Sbjct: 349 LPPALAKFGNSKDDDEDTGVIIGRSGPPMESMGFSPISSHVMDHQITELQQQGSAATGME 408

[Close]

BLAST of MC11g0238 vs. TAIR 10
Match: AT3G49180.1 (Transducin/WD40 repeat-like superfamily protein )

HSP 1 Score: 159.5 bits (402), Expect = 4.0e-39
Identity = 114/328 (34.76%), Postives = 161/328 (49.09%), Query Frame = 0


Query: 5   LIKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQ 64
           L+KKWH HYR+VTCLVFS DDSLL+SGS+DG +R+W LI +FDD  +++   LYEH+F +
Sbjct: 112 LLKKWHGHYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNE 171

Query: 65  HNLPITDIVVVGFGGGSNAIIIFSSVDQTCKVCH-SKGFLCNINNFMMIWLCETIVLRR- 124
           H + +TDIV+    GG NA+II SS D+TCKV   S+G L  + N +   +   + L   
Sbjct: 172 HTMSVTDIVI--DYGGCNAVIISSSEDRTCKVWSLSRGKL--LKNIIFPSVINALALDPG 231

Query: 125 --VFLPSPFD--------------------------------YYVHDLNISLSECK---- 184
             VF     D                                 Y  D N+ +S  +    
Sbjct: 232 GCVFYAGARDSKIYIGAINATSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVV 291

Query: 185 CTGDPYCC-------------AGLVNNILIVREQLLPKSQINYYTSQGSLRKHRSLLSPA 244
           C  DP                 G VNNI IVR+ ++  S      +Q S +   +L+ P 
Sbjct: 292 CVWDPKSLRHVRTLIHAKGSRKGPVNNIQIVRKTIVANSN----KTQVSWKSRGALIPPP 351

Query: 245 FANFENLKDEDEDTSVIIG-------------LSEEFMDSSVSLLQQQGSAATGVELERL 266
              +E   ++  D  V +              LS + +D  V  LQQQGSAAT +E+ERL
Sbjct: 352 LEKYERPVEDTMDGIVTVDPPPFSDVPVYSSFLSADLIDEQVKELQQQGSAATEMEMERL 411

[Close]

BLAST of MC11g0238 vs. TAIR 10
Match: AT2G47410.1 (WD40/YVTN repeat-like-containing domain;Bromodomain )

HSP 1 Score: 43.1 bits (100), Expect = 4.2e-04
Identity = 28/91 (30.77%), Postives = 40/91 (43.96%), Query Frame = 0


Query: 6   IKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQH 65
           IKK   H  AV C +F      +I+GS+D  V+IW + T            L   S   H
Sbjct: 229 IKKLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-----------LCLASCRGH 288

Query: 66  NLPITDIVVVGFGGGSNAIIIFSSVDQTCKV 97
              ITD+ V      +NA++  +S D   +V
Sbjct: 289 EGDITDLAV----SSNNALVASASNDFVIRV 304

[Close]

BLAST of MC11g0238 vs. TAIR 10
Match: AT2G47410.2 (WD40/YVTN repeat-like-containing domain;Bromodomain )

HSP 1 Score: 43.1 bits (100), Expect = 4.2e-04
Identity = 28/91 (30.77%), Postives = 40/91 (43.96%), Query Frame = 0


Query: 6   IKKWHAHYRAVTCLVFSEDDSLLISGSEDGCVRIWPLITVFDDGWQREAKHLYEHSFTQH 65
           IKK   H  AV C +F      +I+GS+D  V+IW + T            L   S   H
Sbjct: 228 IKKLRGHRNAVYCAIFDRSGRYVITGSDDRLVKIWSMETA-----------LCLASCRGH 287

Query: 66  NLPITDIVVVGFGGGSNAIIIFSSVDQTCKV 97
              ITD+ V      +NA++  +S D   +V
Sbjct: 288 EGDITDLAV----SSNNALVASASNDFVIRV 303

The following BLAST results are available for this feature:

BLAST of MC11g0238 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M3B4	5.7e-38	34.76	Protein ROOT INITIATION DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RID3 PE=1...	[more]
A0A1L8HX76	1.1e-09	41.38	WD repeat-containing protein 18 OS=Xenopus laevis OX=8355 GN=wdr18 PE=3 SV=1	[more]
Q6BMP5	1.0e-07	34.34	Pre-rRNA-processing protein IPI3 OS=Debaryomyces hansenii (strain ATCC 36239 / C...	[more]
Q4PHV3	1.1e-04	30.30	Pre-rRNA-processing protein IPI3 OS=Ustilago maydis (strain 521 / FGSC 9021) OX=...	[more]

BLAST of MC11g0238 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898957.1	7.83e-106	57.23	protein ROOT INITIATION DEFECTIVE 3 [Benincasa hispida]	[more]
KGN55205.1	1.02e-103	56.48	hypothetical protein Csa_012375 [Cucumis sativus]	[more]
XP_011654116.2	6.44e-103	56.48	protein ROOT INITIATION DEFECTIVE 3 [Cucumis sativus]	[more]
XP_008452567.1	3.29e-102	55.91	PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Cucumis melo]	[more]
XP_022941447.1	9.43e-101	55.46	protein ROOT INITIATION DEFECTIVE 3 [Cucurbita moschata] >KAG6608496.1 Protein R...	[more]

BLAST of MC11g0238 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZT0	4.93e-104	56.48	WD_REPEATS_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G...	[more]
A0A1S3BU36	1.59e-102	55.91	protein ROOT INITIATION DEFECTIVE 3 OS=Cucumis melo OX=3656 GN=LOC103493552 PE=4...	[more]
A0A6J1FMG7	4.57e-101	55.46	protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita moschata OX=3662 GN=LOC11144674...	[more]
A0A6J1DDG0	1.26e-98	53.87	protein ROOT INITIATION DEFECTIVE 3-like OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1IYT8	2.37e-98	54.57	protein ROOT INITIATION DEFECTIVE 3 OS=Cucurbita maxima OX=3661 GN=LOC111481134 ...	[more]

BLAST of MC11g0238 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49180.1	4.0e-39	34.76	Transducin/WD40 repeat-like superfamily protein	[more]
AT2G47410.1	4.2e-04	30.77	WD40/YVTN repeat-like-containing domain;Bromodomain	[more]
AT2G47410.2	4.2e-04	30.77	WD40/YVTN repeat-like-containing domain;Bromodomain	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 55..98 e-value: 42.0 score: 6.7 coord: 2..41 e-value: 4.9E-8 score: 42.7
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 7..40 e-value: 7.4E-7 score: 29.8
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 9..40 score: 13.516088
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 1..181 e-value: 6.3E-12 score: 47.5
None	No IPR available	PANTHER	PTHR18763	WD-REPEAT PROTEIN 18	coord: 2..128 coord: 154..266
None	No IPR available	PANTHER	PTHR18763:SF0	WD REPEAT-CONTAINING PROTEIN 18	coord: 2..128 coord: 154..266
None	No IPR available	PROSITE	PS50294	WD_REPEATS_REGION	coord: 9..40 score: 11.207411
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 5..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g0238.1	MC11g0238.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050789	regulation of biological process
cellular_component	GO:0032991	protein-containing complex
molecular_function	GO:0005515	protein binding