MC11g0106 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0106
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	AP complex subunit sigma
Location	MC11: 766369 .. 769107 (-)
RNA-Seq Expression	MC11g0106
Synteny	MC11g0106

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGGAGGAGATTTCGAACTCGAACTCGTAGTTCAACTACCTGAGTTATATTCAAGATCGCAAAAATACTTATTTATCTTTCAAACATTTTTTTCCTTGTTTCGAATAAAATTGAAAGTGACTTATTCAAAATGTTTGGGATTATGGAAAATAATAAAAATATATAACGAAATTAGAATTTTTAAAAGTAATTTCAAAACCGCATTTCCAACTTTGTGCGCTGAATTCGGCCTCCGAAAATCAATTCGAGCTCGTTTCGTGGATCTTCATTCGCCGTCTTCAAGAATGGTCTGTTGAATTTCACGTTTTAATGATCTTTCAGGTGGTCTCGGATGTAAGAATCTGACATTGATGTTTGATTTCGGCAGATCCGGTTCATACTTTTGCAAAACAGGCAGGGCAAGACTCGTCTGGCTAAGTACTATGTTCCTCTTGAGGAATCCGAGAAGCACAAGGTCGAATACGAGGTATTTTTATTTTCTCTTGAATTTTATTTCTTAATTCTCTGATTCTAACTTCCTCTTTCCAGGCTCAGTTCTAGGTCTTTTCTTTTGATTGTTTTCTAGGTTCACCGATTGGTGGTGAATAGAGATCCCAAGTTCACAAATTTCGTTGAGGTGAGGACCTTTTGTTCTGATTCCGTAGCTTTATGTATTGAAATTTTAATCTTATGCTGTTTCGTTCTAATATTTGTTCAAATTCGAAGCTTCATTCTAATACTTTTGTCGAAGTGGAACGAAATACCATCCTTTAACCAAGTTCTCTGCTGAATGGTTTCTTCCATTTTATTTCATTTTTTATTAAATTGAGCTGGTGGACTATATTACCTATCGGCTAATTGCATTTTAATATCTGAATGTTTCCTATAGAAGTCTCTTTCAAAGAGGGTGATGGTTATGAGCTAAAGAAATGTTTACCATTTTCTGGTTTATATAGACCTCGTTATAGGTTTACTTGTGTTGTGAGAGTTGTCCTGGATTTATTTCATTTCGGTTGACATTTTTCAGTTCTTTTCGGGTATGAGTCTTAAGATTTGTTTACTTATTTTAGTGTGTCGCGTAATGTGTTCATTTGGTTTTATTAAAGCTCTAGCTTATTGCAACCTCAACCCTTTTCGCAGTTCCGAACACATAAGGTAATCTACAGACGATATGCCGGGTTATTTTTCTCTCTTTGTGTGGACATAACCGACAATGAGTTGGCATATCTCGAGTGTATTCATTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTTTGTGAGCTCGATTTGGTTTTTAACTTTCACAAGGTTTGTTGATCTTAATTTGCCCTCTTCTTTATTCTTGCTTCCATTCTAACGTGTAATGAAGATTATGGTATCTTTGTCTTTCTGTTGTACTTCTGAATCAATTAGCTGGACTGGTTTTGGTACATTTCTTAATTGAATAACATTGTTTCCTCCCCACTACCCGGTGAATTAAAATACTGTCATGGCATTGTGGTCTCAATCAGTAGATACCAGGGGTTAAATTCCTTATGCTTTTTCTCAATTCTTTAAGTTGGTATCAATATCTTAGGTCAGTCAGTTAGGCAGCAGTTGCATATATATTTCTTTTTACCTTCAGTTTCTGGGTTGAAAATGTAAACATTTATCATCTGATGATTGTGTTTGCTTGGATGCGTTTGAGGAATTTCAGAAGACAGTTGAGATTTGTTAGTGTTGTAACTGTAGTGTTAAATCTGCTGACTGCTACCATACCGATCCACATTTTTGTGCTGAATCTGATATAGGTTTATCTGATACTTGACGAATTCATTCTTGCTGGAGAGCTCCAAGAAACAAGCAAAAAGGTAAAGTGTTGCCTGTTTATTTTTAGTTGCTCTGATTTTTCTCATTACCTGACTGTCAAAAAACCTGTCAACACAATCTTGTATCTTCCTAGAATAGTAGTGGTTTTCTATGCCTAGCCATAAAACCATATTATGTGCTCTAGTATTAGTTTCCGTAGAATCTTATGTTTTTAGTAGTTGATTTATATGGATTTCGCTAAAATGGTAGTATTTGGTCTAACATTTTAATTACTTTTTGTCCGTTTTCAGGCGATTATTGAAAGAATGGGGGAGCTGGAAAAGCTGGAGTGAAGATAGTGCATGTTAGAGAGCTAAGATTGCAATTTATTTTCCATGACAGAATTTATTATATTGCTGATTTCAGTTTGATTTGTTTTCCCATAGTATATTTGTCTGTATGGTATTGTTGTGATAAATAGAACAAAGAAGAAAAAGATCGAACAGAATTGAGTCCCCTGCATCACTCTTGCATAGTTTTTGAACATTTTCAGAACATCAACCTTCTATAAATAGTGAAATCCACAGAGAATTCATTCTTGTTGATATACTTCTAGACTCAAAAGTTGTTATCTCAATAATTTATTACATTCAGAAAAGGACCAACTTGATAGTAACATCTTTATTTCGGATATCTGTGATGTGAAATGTAACATAATCATCATAGAACCAGCGACAGTGGCTAGGGACACTTGTGCCTGCCACCGTGTGTGGTCATATTGGCATAGCAGGGACAAACGTCGTAGTTGCCCGAAGTACCCGGTGGAACACATTGACAGCGAGCGCAGCAGGTTCCACATGCCCTCTTACACATCTTCTGCCTCGACGATAATTGGCACCGTGCATCACAAGCCACACCACAATCTGCAAGAGAGACTAGGACTTTGGTAAGTAAGCAACAAGAATT

mRNA sequence

CGGGAGGAGATTTCGAACTCGAACTCGTAGTTCAACTACCTGAGTTATATTCAAGATCGCAAAAATACTTATTTATCTTTCAAACATTTTTTTCCTTGTTTCGAATAAAATTGAAAGTGACTTATTCAAAATGTTTGGGATTATGGAAAATAATAAAAATATATAACGAAATTAGAATTTTTAAAAGTAATTTCAAAACCGCATTTCCAACTTTGTGCGCTGAATTCGGCCTCCGAAAATCAATTCGAGCTCGTTTCGTGGATCTTCATTCGCCGTCTTCAAGAATGATCCGGTTCATACTTTTGCAAAACAGGCAGGGCAAGACTCGTCTGGCTAAGTACTATGTTCCTCTTGAGGAATCCGAGAAGCACAAGGTCGAATACGAGGTTCACCGATTGGTGGTGAATAGAGATCCCAAGTTCACAAATTTCGTTGAGTTCCGAACACATAAGGTAATCTACAGACGATATGCCGGGTTATTTTTCTCTCTTTGTGTGGACATAACCGACAATGAGTTGGCATATCTCGAGTGTATTCATTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTTTGTGAGCTCGATTTGGTTTTTAACTTTCACAAGGTTTATCTGATACTTGACGAATTCATTCTTGCTGGAGAGCTCCAAGAAACAAGCAAAAAGGCGATTATTGAAAGAATGGGGGAGCTGGAAAAGCTGGAGTGAAGATAGTGCATGTTAGAGAGCTAAGATTGCAATTTATTTTCCATGACAGAATTTATTATATTGCTGATTTCAGTTTGATTTGTTTTCCCATAGTATATTTGTCTGTATGGTATTGTTGTGATAAATAGAACAAAGAAGAAAAAGATCGAACAGAATTGAGTCCCCTGCATCACTCTTGCATAGTTTTTGAACATTTTCAGAACATCAACCTTCTATAAATAGTGAAATCCACAGAGAATTCATTCTTGTTGATATACTTCTAGACTCAAAAGTTGTTATCTCAATAATTTATTACATTCAGAAAAGGACCAACTTGATAGTAACATCTTTATTTCGGATATCTGTGATGTGAAATGTAACATAATCATCATAGAACCAGCGACAGTGGCTAGGGACACTTGTGCCTGCCACCGTGTGTGGTCATATTGGCATAGCAGGGACAAACGTCGTAGTTGCCCGAAGTACCCGGTGGAACACATTGACAGCGAGCGCAGCAGGTTCCACATGCCCTCTTACACATCTTCTGCCTCGACGATAATTGGCACCGTGCATCACAAGCCACACCACAATCTGCAAGAGAGACTAGGACTTTGGTAAGTAAGCAACAAGAATT

Coding sequence (CDS)

GGAGGAGATTTCGAACTCGAACTCGTAGTTCAACTACCTGAGTTATATTCAAGATCGCAAAAATACTTATTTATCTTTCAAACATTTTTTTCCTTGTTTCGAATAAAATTGAAAGTGACTTATTCAAAATGTTTGGGATTATGGAAAATAATAAAAATATATAACGAAATTAGAATTTTTAAAAGTAATTTCAAAACCGCATTTCCAACTTTGTGCGCTGAATTCGGCCTCCGAAAATCAATTCGAGCTCGTTTCGTGGATCTTCATTCGCCGTCTTCAAGAATGATCCGGTTCATACTTTTGCAAAACAGGCAGGGCAAGACTCGTCTGGCTAAGTACTATGTTCCTCTTGAGGAATCCGAGAAGCACAAGGTCGAATACGAGGTTCACCGATTGGTGGTGAATAGAGATCCCAAGTTCACAAATTTCGTTGAGTTCCGAACACATAAGGTAATCTACAGACGATATGCCGGGTTATTTTTCTCTCTTTGTGTGGACATAACCGACAATGAGTTGGCATATCTCGAGTGTATTCATTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTTTGTGAGCTCGATTTGGTTTTTAACTTTCACAAGGTTTATCTGATACTTGACGAATTCATTCTTGCTGGAGAGCTCCAAGAAACAAGCAAAAAGGCGATTATTGAAAGAATGGGGGAGCTGGAAAAGCTGGAGTGA

Protein sequence

GGDFELELVVQLPELYSRSQKYLFIFQTFFSLFRIKLKVTYSKCLGLWKIIKIYNEIRIFKSNFKTAFPTLCAEFGLRKSIRARFVDLHSPSSRMIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE

Homology

[Close]

BLAST of MC11g0106 vs. ExPASy Swiss-Prot
Match: Q84WL9 (AP-2 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=AP17 PE=2 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 7.3e-71
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 95  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 154
           MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRD KFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60

Query: 155 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 214
           RYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 215 GELQETSKKAIIERMGELEKLE 237
           GELQETSK+AIIERM ELEKL+
Sbjct: 121 GELQETSKRAIIERMSELEKLQ 142

[Close]

BLAST of MC11g0106 vs. ExPASy Swiss-Prot
Match: O50016 (AP-2 complex subunit sigma OS=Zea mays OX=4577 GN=AP-17 PE=2 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 1.6e-65
Identity = 126/131 (96.18%), Postives = 129/131 (98.47%), Query Frame = 0


Query: 95  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 154
           MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 155 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV--YLILDEFI 214
           RYAGLFFS+CVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV  YLILDEFI
Sbjct: 61  RYAGLFFSICVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYRYLILDEFI 120

Query: 215 LAGELQETSKK 224
           LAGELQETSK+
Sbjct: 121 LAGELQETSKR 131

[Close]

BLAST of MC11g0106 vs. ExPASy Swiss-Prot
Match: Q7SAQ1 (AP-2 complex subunit sigma OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=aps-2 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.2e-49
Identity = 98/143 (68.53%), Postives = 117/143 (81.82%), Query Frame = 0


Query: 95  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIY 154
           M+ FIL+QNRQGKTRLAK+YVP  + EK K++ E+HRLV  RD K+ +NFVEFR HKV+Y
Sbjct: 1   MLSFILIQNRQGKTRLAKWYVPYSDEEKIKLKGEIHRLVAPRDQKYQSNFVEFRNHKVVY 60

Query: 155 RRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFIL 214
           RRYAGLFF  CVD  DNELAYLE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  L
Sbjct: 61  RRYAGLFFCACVDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFNFYKVYAILDEVFL 120

Query: 215 AGELQETSKKAIIERMGELEKLE 237
           AGE++ETSK+ ++ R+  L+KLE
Sbjct: 121 AGEIEETSKQVVLTRLEHLDKLE 143

[Close]

BLAST of MC11g0106 vs. ExPASy Swiss-Prot
Match: Q54H39 (AP-2 complex subunit sigma OS=Dictyostelium discoideum OX=44689 GN=ap2s1 PE=3 SV=2)

HSP 1 Score: 196.8 bits (499), Expect = 2.7e-49
Identity = 95/141 (67.38%), Postives = 117/141 (82.98%), Query Frame = 0


Query: 95  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 154
           MI FIL+QNRQGKTRL+K+Y P E+ EK K+ +E+H++V +R+ KFTNFVEFRTH+++YR
Sbjct: 1   MIHFILIQNRQGKTRLSKWYTPYEDVEKRKLSHEIHKIVNSRETKFTNFVEFRTHRIVYR 60

Query: 155 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 214
           RYAGLFFS+CVD TDNEL  LE IHLFVE+LD +F NVCELDLVFNF+KVY I+DE  LA
Sbjct: 61  RYAGLFFSVCVDPTDNELFCLEAIHLFVEVLDAYFGNVCELDLVFNFYKVYAIIDEVFLA 120

Query: 215 GELQETSKKAIIERMGELEKL 236
           GEL E SK  I++RM  L+ L
Sbjct: 121 GELMEPSKHVILQRMEFLDNL 141

[Close]

BLAST of MC11g0106 vs. ExPASy Swiss-Prot
Match: Q4ICG5 (AP-2 complex subunit sigma OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657 / FGSC 9075 / NRRL 31084 / PH-1) OX=229533 GN=APS2 PE=3 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.5e-47
Identity = 94/143 (65.73%), Postives = 116/143 (81.12%), Query Frame = 0


Query: 95  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKF-TNFVEFRTHKVIY 154
           M+ FIL+QNRQGKTRLAK+Y P  + +K K++ EVHRLV  RD K+ +NFVEFR +K++Y
Sbjct: 1   MLSFILIQNRQGKTRLAKWYAPFSDEQKIKLKGEVHRLVAPRDQKYQSNFVEFRNNKIVY 60

Query: 155 RRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFIL 214
           RRYAGLFF  CVD  DNELA+LE IH FVE+LD FF NVCELDLVFNF+KVY ILDE  L
Sbjct: 61  RRYAGLFFCACVDTNDNELAFLEAIHFFVEVLDAFFGNVCELDLVFNFYKVYAILDEVFL 120

Query: 215 AGELQETSKKAIIERMGELEKLE 237
           AGE++ETSK+ ++ R+  L+KLE
Sbjct: 121 AGEIEETSKQVVLTRLEHLDKLE 143

[Close]

BLAST of MC11g0106 vs. NCBI nr
Match: XP_008466486.1 (PREDICTED: AP-2 complex subunit sigma [Cucumis melo])

HSP 1 Score: 294 bits (752), Expect = 4.74e-98
Identity = 152/166 (91.57%), Postives = 154/166 (92.77%), Query Frame = 0


Query: 71  LCAEFGLRKSIRARFVDLHSPSSRMIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVH 130
           LC+EF      R  F+DL S  S MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVH
Sbjct: 34  LCSEF------RFPFIDLPSSFSTMIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVH 93

Query: 131 RLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFS 190
           RLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFS
Sbjct: 94  RLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFS 153

Query: 191 NVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 236
           NVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 154 NVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 193

[Close]

BLAST of MC11g0106 vs. NCBI nr
Match: XP_004291364.1 (PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca])

HSP 1 Score: 285 bits (730), Expect = 1.17e-94
Identity = 149/168 (88.69%), Postives = 155/168 (92.26%), Query Frame = 0


Query: 71  LCAE-FGLRKSIRARFVDLHSPSSR-MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYE 130
           +C+E FG      + F+ L S +S  MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYE
Sbjct: 29  ICSEGFGPLLRFCSPFLSLKSSTSTTMIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYE 88

Query: 131 VHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHF 190
           VHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHF
Sbjct: 89  VHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHF 148

Query: 191 FSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 236
           FSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 149 FSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 196

[Close]

BLAST of MC11g0106 vs. NCBI nr
Match: XP_004136383.1 (AP-2 complex subunit sigma [Cucumis sativus] >XP_022142554.1 AP-2 complex subunit sigma [Momordica charantia] >XP_022937105.1 AP-2 complex subunit sigma isoform X2 [Cucurbita moschata] >XP_022975656.1 AP-2 complex subunit sigma [Cucurbita maxima] >XP_023535342.1 AP-2 complex subunit sigma [Cucurbita pepo subsp. pepo] >XP_038900122.1 AP-2 complex subunit sigma [Benincasa hispida] >KAG6591270.1 AP-2 complex subunit sigma, partial [Cucurbita argyrosperma subsp. sororia] >KGN60033.1 hypothetical protein Csa_002387 [Cucumis sativus])

HSP 1 Score: 282 bits (721), Expect = 4.30e-94
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 95  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 154
           MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 155 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 214
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 215 GELQETSKKAIIERMGELEKLE 236
           GELQETSKKAIIERMGELEKLE
Sbjct: 121 GELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of MC11g0106 vs. NCBI nr
Match: XP_009335098.2 (PREDICTED: LOW QUALITY PROTEIN: AP-2 complex subunit sigma [Pyrus x bretschneideri])

HSP 1 Score: 284 bits (727), Expect = 5.98e-94
Identity = 144/151 (95.36%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 86  VDLHSPSSRMIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVE 145
           V+  S +S MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVE
Sbjct: 63  VNFSSFASTMIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVE 122

Query: 146 FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVY 205
           FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVY
Sbjct: 123 FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVY 182

Query: 206 LILDEFILAGELQETSKKAIIERMGELEKLE 236
           LILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 183 LILDEFILAGELQETSKKAIIERMGELEKLE 213

[Close]

BLAST of MC11g0106 vs. NCBI nr
Match: XP_008387946.2 (AP-2 complex subunit sigma [Malus domestica])

HSP 1 Score: 284 bits (727), Expect = 5.98e-94
Identity = 144/151 (95.36%), Postives = 147/151 (97.35%), Query Frame = 0


Query: 86  VDLHSPSSRMIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVE 145
           V+  S +S MIRFILLQNRQGKTRLAKYYVPLE+SEKHKVEYEVHRLVVNRDPKFTNFVE
Sbjct: 63  VNFSSFASTMIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVE 122

Query: 146 FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVY 205
           FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVY
Sbjct: 123 FRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVY 182

Query: 206 LILDEFILAGELQETSKKAIIERMGELEKLE 236
           LILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 183 LILDEFILAGELQETSKKAIIERMGELEKLE 213

[Close]

BLAST of MC11g0106 vs. ExPASy TrEMBL
Match: A0A1S3CRC8 (AP-2 complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103503878 PE=3 SV=1)

HSP 1 Score: 294 bits (752), Expect = 2.29e-98
Identity = 152/166 (91.57%), Postives = 154/166 (92.77%), Query Frame = 0


Query: 71  LCAEFGLRKSIRARFVDLHSPSSRMIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVH 130
           LC+EF      R  F+DL S  S MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVH
Sbjct: 34  LCSEF------RFPFIDLPSSFSTMIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVH 93

Query: 131 RLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFS 190
           RLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFS
Sbjct: 94  RLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFS 153

Query: 191 NVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 236
           NVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
Sbjct: 154 NVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 193

[Close]

BLAST of MC11g0106 vs. ExPASy TrEMBL
Match: A0A6J1IET7 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111475477 PE=3 SV=1)

HSP 1 Score: 282 bits (721), Expect = 2.08e-94
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 95  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 154
           MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 155 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 214
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 215 GELQETSKKAIIERMGELEKLE 236
           GELQETSKKAIIERMGELEKLE
Sbjct: 121 GELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of MC11g0106 vs. ExPASy TrEMBL
Match: A0A0A0LE78 (AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_3G872150 PE=3 SV=1)

HSP 1 Score: 282 bits (721), Expect = 2.08e-94
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 95  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 154
           MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 155 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 214
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 215 GELQETSKKAIIERMGELEKLE 236
           GELQETSKKAIIERMGELEKLE
Sbjct: 121 GELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of MC11g0106 vs. ExPASy TrEMBL
Match: A0A6J1CLU3 (AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111012636 PE=3 SV=1)

HSP 1 Score: 282 bits (721), Expect = 2.08e-94
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 95  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 154
           MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 155 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 214
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 215 GELQETSKKAIIERMGELEKLE 236
           GELQETSKKAIIERMGELEKLE
Sbjct: 121 GELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of MC11g0106 vs. ExPASy TrEMBL
Match: A0A6J1FFL5 (AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111443508 PE=3 SV=1)

HSP 1 Score: 282 bits (721), Expect = 2.08e-94
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 95  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 154
           MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 60

Query: 155 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 214
           RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 215 GELQETSKKAIIERMGELEKLE 236
           GELQETSKKAIIERMGELEKLE
Sbjct: 121 GELQETSKKAIIERMGELEKLE 142

[Close]

BLAST of MC11g0106 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 268.5 bits (685), Expect = 5.2e-72
Identity = 136/142 (95.77%), Postives = 139/142 (97.89%), Query Frame = 0


Query: 95  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 154
           MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRD KFTNFVEFRTHKVIYR
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60

Query: 155 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 214
           RYAGLFFS+CVDITDNELAYLE IHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA
Sbjct: 61  RYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 215 GELQETSKKAIIERMGELEKLE 237
           GELQETSK+AIIERM ELEKL+
Sbjct: 121 GELQETSKRAIIERMSELEKLQ 142

[Close]

BLAST of MC11g0106 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 159.8 bits (403), Expect = 2.6e-39
Identity = 76/141 (53.90%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 95  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 154
           MI F+LL +RQGK RL K+Y P  + E+ KV  E+  +++NR PK  NF+E+R +KV+Y+
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 155 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 214
           RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++A
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 215 GELQETSKKAIIERMGELEKL 236
           GELQE+SKK +   +   ++L
Sbjct: 121 GELQESSKKTVARIISAQDQL 141

[Close]

BLAST of MC11g0106 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 159.8 bits (403), Expect = 2.6e-39
Identity = 77/141 (54.61%), Postives = 104/141 (73.76%), Query Frame = 0


Query: 95  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 154
           MI F+LL +RQGK RL K+Y P  + E+ KV  E+  +++NR PK  NFVE+R +KV+Y+
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 155 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 214
           RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++A
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 215 GELQETSKKAIIERMGELEKL 236
           GELQE+SKK +   +   ++L
Sbjct: 121 GELQESSKKTVARIISAQDQL 141

[Close]

BLAST of MC11g0106 vs. TAIR 10
Match: AT4G35410.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 133.3 bits (334), Expect = 2.6e-31
Identity = 63/110 (57.27%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 95  MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYR 154
           MI F+LL +RQGK RL K+Y P  + E+ KV  E+  +++NR PK  NFVE+R +KV+Y+
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 155 RYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKV 205
           RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHKV
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKV 110

[Close]

BLAST of MC11g0106 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 122.5 bits (306), Expect = 4.6e-28
Identity = 65/139 (46.76%), Postives = 95/139 (68.35%), Query Frame = 0


Query: 96  IRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRR 155
           IRFIL+ N+QG+TRLA+YY  L   E+  +E E+ R  + R+ +  +FVE R +K++YRR
Sbjct: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRR 62

Query: 156 YAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAG 215
           YA LFF + VD  +NELA LE IHL VE +D  F NVCELD++F+  K + +L+E ++ G
Sbjct: 63  YASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNG 122

Query: 216 ELQETSKKAIIERMGELEK 235
            + ETSK  I+  +  ++K
Sbjct: 123 CIVETSKANILSPIQLMDK 141

The following BLAST results are available for this feature:

BLAST of MC11g0106 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84WL9	7.3e-71	95.77	AP-2 complex subunit sigma OS=Arabidopsis thaliana OX=3702 GN=AP17 PE=2 SV=1	[more]
O50016	1.6e-65	96.18	AP-2 complex subunit sigma OS=Zea mays OX=4577 GN=AP-17 PE=2 SV=1	[more]
Q7SAQ1	1.2e-49	68.53	AP-2 complex subunit sigma OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A ...	[more]
Q54H39	2.7e-49	67.38	AP-2 complex subunit sigma OS=Dictyostelium discoideum OX=44689 GN=ap2s1 PE=3 SV...	[more]
Q4ICG5	1.5e-47	65.73	AP-2 complex subunit sigma OS=Gibberella zeae (strain ATCC MYA-4620 / CBS 123657...	[more]

BLAST of MC11g0106 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466486.1	4.74e-98	91.57	PREDICTED: AP-2 complex subunit sigma [Cucumis melo]	[more]
XP_004291364.1	1.17e-94	88.69	PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]	[more]
XP_004136383.1	4.30e-94	100.00	AP-2 complex subunit sigma [Cucumis sativus] >XP_022142554.1 AP-2 complex subuni...	[more]
XP_009335098.2	5.98e-94	95.36	PREDICTED: LOW QUALITY PROTEIN: AP-2 complex subunit sigma [Pyrus x bretschneide...	[more]
XP_008387946.2	5.98e-94	95.36	AP-2 complex subunit sigma [Malus domestica]	[more]

BLAST of MC11g0106 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CRC8	2.29e-98	91.57	AP-2 complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103503878 PE=3 SV=1	[more]
A0A6J1IET7	2.08e-94	100.00	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111475477 PE=3 SV=1	[more]
A0A0A0LE78	2.08e-94	100.00	AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_3G872150 PE=3 SV=1	[more]
A0A6J1CLU3	2.08e-94	100.00	AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111012636 PE=3 SV=...	[more]
A0A6J1FFL5	2.08e-94	100.00	AP complex subunit sigma OS=Cucurbita moschata OX=3662 GN=LOC111443508 PE=3 SV=1	[more]

BLAST of MC11g0106 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G47830.1	5.2e-72	95.77	SNARE-like superfamily protein	[more]
AT2G17380.1	2.6e-39	53.90	associated protein 19	[more]
AT4G35410.2	2.6e-39	54.61	Clathrin adaptor complex small chain family protein	[more]
AT4G35410.1	2.6e-31	57.27	Clathrin adaptor complex small chain family protein	[more]
AT2G19790.1	4.6e-28	46.76	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 95..235 e-value: 5.6E-53 score: 178.7
None	No IPR available	GENE3D	3.30.450.60		coord: 95..236 e-value: 6.5E-60 score: 203.5
None	No IPR available	PANTHER	PTHR11753:SF41	AP COMPLEX SUBUNIT SIGMA	coord: 96..236
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 96..236
IPR027156	AP-2 complex subunit sigma	CDD	cd14833	AP2_sigma	coord: 95..235 e-value: 1.65497E-94 score: 271.368
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 95..230

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g0106.1	MC11g0106.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0072583	clathrin-dependent endocytosis
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0015031	protein transport
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030122	AP-2 adaptor complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0035615	clathrin adaptor activity