MC11g0032 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC11g0032
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	DNA helicase
Location	MC11: 248992 .. 249135 (-)
RNA-Seq Expression	MC11g0032
Synteny	MC11g0032

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTGATGAAAGGAGAGCCGCTGGTGAGGAAGCTGGCCGTGCTCGCCAAGTACGTTGTTCTTCCGGGAGCCATGGTTGCTGCTCTCGTTTACTCTCCTCCTGATTACGCTTACTACAAGAATGGCGATCAGTCATCCAAA

mRNA sequence

ATGGCGTTGATGAAAGGAGAGCCGCTGGTGAGGAAGCTGGCCGTGCTCGCCAAGTACGTTGTTCTTCCGGGAGCCATGGTTGCTGCTCTCGTTTACTCTCCTCCTGATTACGCTTACTACAAGAATGGCGATCAGTCATCCAAA

Coding sequence (CDS)

ATGGCGTTGATGAAAGGAGAGCCGCTGGTGAGGAAGCTGGCCGTGCTCGCCAAGTACGTTGTTCTTCCGGGAGCCATGGTTGCTGCTCTCGTTTACTCTCCTCCTGATTACGCTTACTACAAGAATGGCGATCAGTCATCCAAA

Protein sequence

MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKNGDQSSK

Homology

[Close]

BLAST of MC11g0032 vs. NCBI nr
Match: KAG7037970.1 (hypothetical protein SDJN02_01603, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.5 bits (197), Expect = 2.98e-18
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKNGD 44
          MALMKGEPLVRKLAV AKYVVLPGAM AALVYSPPDYAY+KN D
Sbjct: 1  MALMKGEPLVRKLAVFAKYVVLPGAMAAALVYSPPDYAYFKNDD 44

[Close]

BLAST of MC11g0032 vs. NCBI nr
Match: CAB4267529.1 (unnamed protein product [Prunus armeniaca] >CAB4298007.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 74.3 bits (181), Expect = 4.17e-16
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKNGDQSSK 48
          MALM+GEPLV KLAVLAKYVVLPGAMVAAL+YSPPDY   KN  +S+K
Sbjct: 14 MALMRGEPLVTKLAVLAKYVVLPGAMVAALIYSPPDYTSSKNDPKSTK 61

[Close]

BLAST of MC11g0032 vs. NCBI nr
Match: PSR99489.1 (DNA helicase [Actinidia chinensis var. chinensis])

HSP 1 Score: 73.9 bits (180), Expect = 4.56e-16
Identity = 37/47 (78.72%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKNGDQSS 47
          M  M+GEPLV KLAVLAKY VLPGAMVAAL+YSPPDYAY K  DQ S
Sbjct: 1  MTFMRGEPLVAKLAVLAKYAVLPGAMVAALIYSPPDYAYEKKHDQGS 47

[Close]

BLAST of MC11g0032 vs. NCBI nr
Match: KAG2698054.1 (hypothetical protein I3760_07G133200 [Carya illinoinensis] >KAG6648250.1 hypothetical protein CIPAW_07G134400 [Carya illinoinensis] >KAG6704534.1 hypothetical protein I3842_07G137400 [Carya illinoinensis])

HSP 1 Score: 72.8 bits (177), Expect = 1.25e-15
Identity = 37/48 (77.08%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKNGDQSSK 48
          MA M+GEPLV KLAVLAKYVVLPGAMVAAL+YSPPDYA     D+S K
Sbjct: 1  MAFMRGEPLVTKLAVLAKYVVLPGAMVAALIYSPPDYASSSKSDKSQK 48

[Close]

BLAST of MC11g0032 vs. NCBI nr
Match: KAG7971403.1 (hypothetical protein I3843_07G132200 [Carya illinoinensis])

HSP 1 Score: 70.9 bits (172), Expect = 7.27e-15
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKNGDQSSK 48
          MA M+GEPLV KLAVLAKYVVLPGAMVAAL+YSPPDYA     ++S K
Sbjct: 1  MAFMRGEPLVTKLAVLAKYVVLPGAMVAALIYSPPDYASSSKSNKSQK 48

[Close]

BLAST of MC11g0032 vs. ExPASy TrEMBL
Match: A0A6J5TUT5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS10256 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.02e-16
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKNGDQSSK 48
          MALM+GEPLV KLAVLAKYVVLPGAMVAAL+YSPPDY   KN  +S+K
Sbjct: 14 MALMRGEPLVTKLAVLAKYVVLPGAMVAALIYSPPDYTSSKNDPKSTK 61

[Close]

BLAST of MC11g0032 vs. ExPASy TrEMBL
Match: A0A2R6PZ99 (DNA helicase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23464 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.21e-16
Identity = 37/47 (78.72%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKNGDQSS 47
          M  M+GEPLV KLAVLAKY VLPGAMVAAL+YSPPDYAY K  DQ S
Sbjct: 1  MTFMRGEPLVAKLAVLAKYAVLPGAMVAALIYSPPDYAYEKKHDQGS 47

[Close]

BLAST of MC11g0032 vs. ExPASy TrEMBL
Match: A0A0A0L4N8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664390 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.76e-15
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKNGDQSSK 48
          MALMKGEPL+RKLAV A Y+VLPGAM AAL+YSPPDY Y K  ++  K
Sbjct: 1  MALMKGEPLLRKLAVFAGYIVLPGAMAAALIYSPPDYIYSKKNEKDDK 48

[Close]

BLAST of MC11g0032 vs. ExPASy TrEMBL
Match: A0A7J0EK53 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0010570 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 7.43e-15
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKNGDQSS 47
          MA M+GEPLV KLAVLAKY VLPGAMVAAL+YSPPDYA  K  D +S
Sbjct: 1  MAFMRGEPLVAKLAVLAKYAVLPGAMVAALIYSPPDYASDKKHDHAS 47

[Close]

BLAST of MC11g0032 vs. ExPASy TrEMBL
Match: A0A7J6E203 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_018844 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.77e-14
Identity = 31/44 (70.45%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1  MALMKGEPLVRKLAVLAKYVVLPGAMVAALVYSPPDYAYYKNGD 44
          MA +KGEPL+RKLA+++KY VLPGAM+AALVYSPPD+ YY N +
Sbjct: 37 MAFLKGEPLIRKLALVSKYAVLPGAMIAALVYSPPDFVYYSNNN 80

The following BLAST results are available for this feature:

BLAST of MC11g0032 vs.


Match Name	E-value	Identity	Description

BLAST of MC11g0032 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7037970.1	2.98e-18	90.91	hypothetical protein SDJN02_01603, partial [Cucurbita argyrosperma subsp. argyro...	[more]
CAB4267529.1	4.17e-16	79.17	unnamed protein product [Prunus armeniaca] >CAB4298007.1 unnamed protein product...	[more]
PSR99489.1	4.56e-16	78.72	DNA helicase [Actinidia chinensis var. chinensis]	[more]
KAG2698054.1	1.25e-15	77.08	hypothetical protein I3760_07G133200 [Carya illinoinensis] >KAG6648250.1 hypothe...	[more]
KAG7971403.1	7.27e-15	75.00	hypothetical protein I3843_07G132200 [Carya illinoinensis]	[more]

BLAST of MC11g0032 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J5TUT5	2.02e-16	79.17	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS10256 PE=4 S...	[more]
A0A2R6PZ99	2.21e-16	78.72	DNA helicase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc23464 ...	[more]
A0A0A0L4N8	3.76e-15	70.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G664390 PE=4 SV=1	[more]
A0A7J0EK53	7.43e-15	76.60	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_04g0010570 PE=4 SV=1	[more]
A0A7J6E203	1.77e-14	70.45	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_018844 PE=4 SV=1	[more]

BLAST of MC11g0032 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC11g0032.1	MC11g0032.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004386	helicase activity