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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. TGGGGGTTGAAAATCGTATTGCCGCATGGAGGACAGAAAAAGGTCCAACTTTGGAGGTTTTCCCTTTGTTGGCCGACCTGAAGTGGTCGACTTGAAGATCTTCCCTTTAGTGGCCGACCTGAAGATCTTCCTTTTGGTGGCCGACCTGAAGTGGCAGACCTAAAAAGCTCCACTGAGGGCAGACCTGAAGAGCTCCATTGAGGGCCGACCTGAAGAGCTCCCCTAAGGGCCGACCTGAAGGCTTTGCCTGATGGCCGACCTGAAAAGCTTCCTTGAAGGCCAACCTGAAGGCCTTGCCTAATGGCCGACCTGAGGCCTTCCCTAAAGGCTGATCTGAAGGTCTTCCCTGAAGATCATCCAAGGGAGGAACGACCTTCCATACTTAGTCAAATTCCAAATGACAAGAGTATGAGCTGGAATAGCTACTCCCGACAGGCCGACCTTGGTCTCGACATGCTCAACTGCTGGTCGGATTCCTTGTCGGGTACCTCAATCTATAAATAGGGCACTTCACTCTTCAGTCAGGTATCGTATTCTAGCTCGGTCTCCACACTAAGGTCGGACTCAAAACTGACTTGAGGGTCGGAGTATTTGTTCCCTTGTGCAGGTCTTTCTTCGCCAAGTGACCTTTCAACTCATTCTTGACACCTGCTCATCCGAGTCAGCCGACCTTGACCCTTCAAGTTGGTCATCCCTTTCCAAGGATACGTTAGCTCTTCCCACTGTCATACTTGAAGCAAGTTAAGCTCTTCCCGCGATCATACCTAGAGCATGTCGAGCTCTTCCGCATGGCCGTCCTTGACCAGGTCATACCATGTCACATTTTTTGCATAAACAAAATTCAAGCTTTATCCCATTCAAGTTAAAATTGGT mRNA sequence ATGGCCGACCTGAGGCCTTCCCTAAAGGCTGATCTGAAGGTCTTCCCTGAAGATCATCCAAGGGAGGAACGACCTTCCATACTTAGTCAAATTCCAAATGACAAGAGTATGAGCTGGAATAGCTACTCCCGACAGGCCGACCTTGGTCTCGACATGCTCAACTGCTGGTCGGATTCCTTGTCGGGTACCTCAATCTATAAATAG Coding sequence (CDS) ATGGCCGACCTGAGGCCTTCCCTAAAGGCTGATCTGAAGGTCTTCCCTGAAGATCATCCAAGGGAGGAACGACCTTCCATACTTAGTCAAATTCCAAATGACAAGAGTATGAGCTGGAATAGCTACTCCCGACAGGCCGACCTTGGTCTCGACATGCTCAACTGCTGGTCGGATTCCTTGTCGGGTACCTCAATCTATAAATAG Protein sequence MADLRPSLKADLKVFPEDHPREERPSILSQIPNDKSMSWNSYSRQADLGLDMLNCWSDSLSGTSIYK
Homology
BLAST of MC10g_new0259 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]) HSP 1 Score: 114 bits (285), Expect = 1.55e-27 Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0 Query: 1 MADLRPSLKADLKVFPEDHPREERPSILSQIPNDKSMSWNSYSRQADLGLDMLNCWSDSL 60 MADLRPSLKADLKVFPEDH EERPSILSQ+P+DKSM+WNSYSRQADLG DMLN WSDSL Sbjct: 1 MADLRPSLKADLKVFPEDHSWEERPSILSQVPDDKSMNWNSYSRQADLGPDMLNRWSDSL 60
Query: 61 SG 62 SG Sbjct: 61 SG 62
BLAST of MC10g_new0259 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1) HSP 1 Score: 114 bits (285), Expect = 7.51e-28 Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0 Query: 1 MADLRPSLKADLKVFPEDHPREERPSILSQIPNDKSMSWNSYSRQADLGLDMLNCWSDSL 60 MADLRPSLKADLKVFPEDH EERPSILSQ+P+DKSM+WNSYSRQADLG DMLN WSDSL Sbjct: 1 MADLRPSLKADLKVFPEDHSWEERPSILSQVPDDKSMNWNSYSRQADLGPDMLNRWSDSL 60
Query: 61 SG 62 SG Sbjct: 61 SG 62
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_022143495.1 | 1.55e-27 | 88.71 | LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1CNY7 | 7.51e-28 | 88.71 | Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0071897 |
DNA biosynthetic process |
biological_process |
GO:0015074 |
DNA integration |
biological_process |
GO:0006310 |
DNA recombination |
biological_process |
GO:0090502 |
RNA phosphodiester bond hydrolysis, endonucleolytic |
molecular_function |
GO:0003887 |
DNA-directed DNA polymerase activity |
molecular_function |
GO:0003723 |
RNA binding |
molecular_function |
GO:0004523 |
RNA-DNA hybrid ribonuclease activity |
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