MC10g_new0216 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC10g_new0216
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC10: 10109250 .. 10109489 (-)
RNA-Seq Expression	MC10g_new0216
Synteny	MC10g_new0216

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGCTGGAGATTGAAGTCCCGTCCAAAGGCTCCGGCGATGGCGAGGCCACTAAATCCGAGAGTTCTGATAATTGTTTTAGGTATATCGAGGGAATTACAGAGATGGAACTTGAAGCTCGGATTACTCGCCTCGAGAATTTGGCTGCAGAGCTACACGCAGCAAGATTTCGCAATCGCAACGCCTCTCTGTCTCCTAAAGGAAGCTCCAATAACATTCGAAGATGCTCCTTTTAA

mRNA sequence

ATGAAGAAGCTGGAGATTGAAGTCCCGTCCAAAGGCTCCGGCGATGGCGAGGCCACTAAATCCGAGAGTTCTGATAATTGTTTTAGGTATATCGAGGGAATTACAGAGATGGAACTTGAAGCTCGGATTACTCGCCTCGAGAATTTGGCTGCAGAGCTACACGCAGCAAGATTTCGCAATCGCAACGCCTCTCTGTCTCCTAAAGGAAGCTCCAATAACATTCGAAGATGCTCCTTTTAA

Coding sequence (CDS)

ATGAAGAAGCTGGAGATTGAAGTCCCGTCCAAAGGCTCCGGCGATGGCGAGGCCACTAAATCCGAGAGTTCTGATAATTGTTTTAGGTATATCGAGGGAATTACAGAGATGGAACTTGAAGCTCGGATTACTCGCCTCGAGAATTTGGCTGCAGAGCTACACGCAGCAAGATTTCGCAATCGCAACGCCTCTCTGTCTCCTAAAGGAAGCTCCAATAACATTCGAAGATGCTCCTTTTAA

Protein sequence

MKKLEIEVPSKGSGDGEATKSESSDNCFRYIEGITEMELEARITRLENLAAELHAARFRNRNASLSPKGSSNNIRRCSF

Homology

[Close]

BLAST of MC10g_new0216 vs. NCBI nr
Match: XP_022151001.1 (uncharacterized protein LOC111019021 [Momordica charantia])

HSP 1 Score: 50.8 bits (120), Expect = 5.48e-05
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 25  DNCFRYIEGITEMELEARITRLENLAAELHAARFRN 60
           D   RY++G+TEMELEARI+RLE+L AE+ AARF N
Sbjct: 561 DEGIRYVKGVTEMELEARISRLESLDAEIRAARFGN 596

[Close]

BLAST of MC10g_new0216 vs. ExPASy TrEMBL
Match: A0A6J1DD84 (uncharacterized protein LOC111019021 OS=Momordica charantia OX=3673 GN=LOC111019021 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.65e-05
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 25  DNCFRYIEGITEMELEARITRLENLAAELHAARFRN 60
           D   RY++G+TEMELEARI+RLE+L AE+ AARF N
Sbjct: 561 DEGIRYVKGVTEMELEARISRLESLDAEIRAARFGN 596

The following BLAST results are available for this feature:

BLAST of MC10g_new0216 vs.


Match Name	E-value	Identity	Description

BLAST of MC10g_new0216 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151001.1	5.48e-05	66.67	uncharacterized protein LOC111019021 [Momordica charantia]	[more]

BLAST of MC10g_new0216 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DD84	2.65e-05	66.67	uncharacterized protein LOC111019021 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]

BLAST of MC10g_new0216 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 36..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC10g_new0216.1	MC10g_new0216.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance