MC10g_new0204 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC10g_new0204
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	dicarboxylate transporter 2.1, chloroplastic
Location	MC10: 9867531 .. 9868319 (-)
RNA-Seq Expression	MC10g_new0204
Synteny	MC10g_new0204

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGATCTGATGTCGTGAATGTGGAAGTTCTTTTGCTTCTTGAGTTATATTTTTTTTGGCTTTGTTTTTGTTTTTGTTTATTTTTATGTAGTTATTATTGAGACCAGAGATTTTGTCGGATTTCTCCCATTCTTAGTTTAGTTTCTTCTCTTCATAGGTTAAACTAGAATGTTGTATTTTGGGTCGACCATCAATTTTCAACCAGCCGGTTCCTAGATATGGCCAATCGAAAAATTCTGGTTCGTCCCAAAAACACCCCTAATTACCTGACCCGACCCAATCCAAACCGTGAACACCCTACTTCCATCCCTCCTCTTCTCCTCCACCGTTACGGGTTCCCTTACTCCACTTACTTCTCTCTGCCATCTTCAAATGGAAGTTTTGCCCTCCAATCCCTCTCCACTACCTCCTCGTTTTCTCCCTATTCTCGCATTTCTCTCCTCTGGTGCCCACGATCCATTTCACATTCTCTATCATTTTCCTTTTCCTTCTCCCCCAATTCCTCCTGCTTGATCTCGTATATACTCCTTCACTCTTCCCCACCACTTCCATTTCTCCATTTTCACTCCTCAATCTTCCCTCTTCAATTCGCTCCTGAAATTGTGTCGATTCCACCCAATGCGGACCACCACCTCTCAATTGCCCGACAATCAGTCCTCAAACCCACCTCCTCGCCAGGGCACCAAGCCCATCCTGTTAGAAAACAAAAACTTTATATAAGATCTATGCATGGGAGTAGGCTAAAGAACTATAAGTTATTTCGAATTACCTGAATCCATGAGTAGAGATT

mRNA sequence

ATGGCCAATCGAAAAATTCTGGTTCGTCCCAAAAACACCCCTAATTACCTGACCCGACCCAATCCAAACCGTGAACACCCTACTTCCATCCCTCCTCTTCTCCTCCACCGTTACGGGTTCCCTTACTCCACTTACTTCTCTCTGCCATCTTCAAATGGAAGTTTTGCCCTCCAATCCCTCTCCACTACCTCCTCGTTTTCTCCCTATTCTCGCATTTCTCTCCTCTGGTGCCCACGATCCATTTCACATTCTCTATCATTTTCCTTTTCCTTCTCCCCCAATTCCTCCTGCTTGATCTCGTATATACTCCTTCACTCTTCCCCACCACTTCCATTTCTCCATTTTCACTCCTCAATCTTCCCTCTTCAATTCGCTCCTGAAATTGTGTCGATTCCACCCAATGCGGACCACCACCTCTCAATTGCCCGACAATCAGTCCTCAAACCCACCTCCTCGCCAGGGCACCAAGCCCATCCTGTTAGAAAACAAAAACTTTATATAAGATCTATGCATGGGAGTAGGCTAAAGAACTATAAGTTATTTCGAATTACCTGA

Coding sequence (CDS)

ATGGCCAATCGAAAAATTCTGGTTCGTCCCAAAAACACCCCTAATTACCTGACCCGACCCAATCCAAACCGTGAACACCCTACTTCCATCCCTCCTCTTCTCCTCCACCGTTACGGGTTCCCTTACTCCACTTACTTCTCTCTGCCATCTTCAAATGGAAGTTTTGCCCTCCAATCCCTCTCCACTACCTCCTCGTTTTCTCCCTATTCTCGCATTTCTCTCCTCTGGTGCCCACGATCCATTTCACATTCTCTATCATTTTCCTTTTCCTTCTCCCCCAATTCCTCCTGCTTGATCTCGTATATACTCCTTCACTCTTCCCCACCACTTCCATTTCTCCATTTTCACTCCTCAATCTTCCCTCTTCAATTCGCTCCTGAAATTGTGTCGATTCCACCCAATGCGGACCACCACCTCTCAATTGCCCGACAATCAGTCCTCAAACCCACCTCCTCGCCAGGGCACCAAGCCCATCCTGTTAGAAAACAAAAACTTTATATAAGATCTATGCATGGGAGTAGGCTAAAGAACTATAAGTTATTTCGAATTACCTGA

Protein sequence

MANRKILVRPKNTPNYLTRPNPNREHPTSIPPLLLHRYGFPYSTYFSLPSSNGSFALQSLSTTSSFSPYSRISLLWCPRSISHSLSFSFSFSPNSSCLISYILLHSSPPLPFLHFHSSIFPLQFAPEIVSIPPNADHHLSIARQSVLKPTSSPGHQAHPVRKQKLYIRSMHGSRLKNYKLFRIT

Homology

[Close]

BLAST of MC10g_new0204 vs. NCBI nr
Match: XP_022141062.1 (dicarboxylate transporter 2.1, chloroplastic [Momordica charantia])

HSP 1 Score: 60.5 bits (145), Expect = 5.79e-07
Identity = 49/107 (45.79%), Postives = 54/107 (50.47%), Query Frame = 0


Query: 54  SFALQSLSTTSSFSPYSRISLLWCPRSISHSLSFSFSFSPNSSCLISYILLHSSPPLPFL 113
           SFALQSLSTTSSFSP SRISLL  PR ISHS SFSF  SPN S   S  + H     P  
Sbjct: 3   SFALQSLSTTSSFSPISRISLLRRPRPISHSQSFSFPISPNFSPSTSKPISH----FPLF 62

Query: 114 HFHSSIFPLQFAPEIVSIPPNADHHLSIARQSVLKPTSSPGHQAHPV 160
              SS+F     P+     P      S     +  PT  P   A P+
Sbjct: 63  TSQSSLF--NSLPKSHRYHPMRTTAQSSQSPDIQSPTPPPRRGAKPI 103

[Close]

BLAST of MC10g_new0204 vs. NCBI nr
Match: XP_008462877.1 (PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Cucumis melo])

HSP 1 Score: 52.8 bits (125), Expect = 2.52e-04
Identity = 46/112 (41.07%), Postives = 57/112 (50.89%), Query Frame = 0


Query: 55  FALQSLSTTSSFSPYS---RISLLWCPRSISHSLSFSFSFSPNSSCLISYILLHSSPPL- 114
           FALQS+STT+SFSP+S   RISLL   + ISHSLSF  S   + S      L  S+PP+ 
Sbjct: 4   FALQSVSTTTSFSPHSPTSRISLLHRSKPISHSLSFPSSLHLSRSIS----LFQSTPPIS 63

Query: 115 --PFLHFHSSIFPLQFAPEIVSIPPNADHHLSIARQSVLKPTSSPGHQAHPV 160
             PFL   SS+F   F P++    P             L PT  P   A P+
Sbjct: 64  QSPFLSSRSSLFNPLFNPKLRRAFPMRTSASQSPDNQPLPPTPPPRQGAKPI 111

[Close]

BLAST of MC10g_new0204 vs. ExPASy TrEMBL
Match: A0A6J1CIT1 (dicarboxylate transporter 2.1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111011554 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.80e-07
Identity = 49/107 (45.79%), Postives = 54/107 (50.47%), Query Frame = 0


Query: 54  SFALQSLSTTSSFSPYSRISLLWCPRSISHSLSFSFSFSPNSSCLISYILLHSSPPLPFL 113
           SFALQSLSTTSSFSP SRISLL  PR ISHS SFSF  SPN S   S  + H     P  
Sbjct: 3   SFALQSLSTTSSFSPISRISLLRRPRPISHSQSFSFPISPNFSPSTSKPISH----FPLF 62

Query: 114 HFHSSIFPLQFAPEIVSIPPNADHHLSIARQSVLKPTSSPGHQAHPV 160
              SS+F     P+     P      S     +  PT  P   A P+
Sbjct: 63  TSQSSLF--NSLPKSHRYHPMRTTAQSSQSPDIQSPTPPPRRGAKPI 103

[Close]

BLAST of MC10g_new0204 vs. ExPASy TrEMBL
Match: A0A1S3CHW4 (dicarboxylate transporter 2.1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501156 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.22e-04
Identity = 46/112 (41.07%), Postives = 57/112 (50.89%), Query Frame = 0


Query: 55  FALQSLSTTSSFSPYS---RISLLWCPRSISHSLSFSFSFSPNSSCLISYILLHSSPPL- 114
           FALQS+STT+SFSP+S   RISLL   + ISHSLSF  S   + S      L  S+PP+ 
Sbjct: 4   FALQSVSTTTSFSPHSPTSRISLLHRSKPISHSLSFPSSLHLSRSIS----LFQSTPPIS 63

Query: 115 --PFLHFHSSIFPLQFAPEIVSIPPNADHHLSIARQSVLKPTSSPGHQAHPV 160
             PFL   SS+F   F P++    P             L PT  P   A P+
Sbjct: 64  QSPFLSSRSSLFNPLFNPKLRRAFPMRTSASQSPDNQPLPPTPPPRQGAKPI 111

The following BLAST results are available for this feature:

BLAST of MC10g_new0204 vs.


Match Name	E-value	Identity	Description

BLAST of MC10g_new0204 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141062.1	5.79e-07	45.79	dicarboxylate transporter 2.1, chloroplastic [Momordica charantia]	[more]
XP_008462877.1	2.52e-04	41.07	PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Cucumis melo]	[more]

BLAST of MC10g_new0204 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CIT1	2.80e-07	45.79	dicarboxylate transporter 2.1, chloroplastic OS=Momordica charantia OX=3673 GN=L...	[more]
A0A1S3CHW4	1.22e-04	41.07	dicarboxylate transporter 2.1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10350...	[more]

BLAST of MC10g_new0204 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC10g_new0204.1	MC10g_new0204.1	mRNA