MC10g_new0197 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC10g_new0197
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	CCHC-type domain-containing protein
Location	MC10: 9740041 .. 9740906 (+)
RNA-Seq Expression	MC10g_new0197
Synteny	MC10g_new0197

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAGATATCGCTATTGACATTGATTCCTTTGCTTCCGTCAATGTTGGATCGAAAATAGAGCAAAGTGTGGTTGGGAAACTCTATATCAAACGCCTGATCTCTTGCAATGTTTTGAAAACCACCATGAAGAGCGCATGGAAGCTAGAAAATAACTCGTTTGAGGTAGAAAGTATTGGTTGGAATATTTTCATTTTTTTACTTTCATTCGTTCTGTGGACAGGAACAGGATTTTTCGTGCTGGCCCCTGGAATTTCGACAAATCTGTGGTAATCCTGATCAAGCCAGCCTCCATGATCCGGCCTTCTAAACTGGATTTCTCTAAATTACCTATTTTGGTACACTTCTTTGATCTCCCTCTCGCTTGTATGATTAAAGCTATGGCAGTAAAACTTGGGAATACACTGGGTACTTTTGAAGAGGTGGATGAAGATGGTACCGGTCTATGTTGGGGATCAAGCTTGAGAGTTCGCCTTGACATCTCAAAACCTCTTCATCGAGATATAAAGCGTAATCTTGATGGCCTTATTGGTGGATGTTGGATCCCGATCCAATATGAGCGCCTACCGGATTTTTGTTTTCACTGTGGGAAGTTGATCACATTCTGAAGGATTGTGAAGCAACCTATTCTGAATCGGGGTTCATCGCCTCTCGTGCGAAGCATCCATATGGTCCATGGCTCCGTTACCAAGGATCATTGAAGCCCCATTCAAAACTACTACAACAGAATCATGCTTCATCACATAGTAGCTCAGAGAACAACACTAAATTCGTCGCTGAAGCTCCAAAAGAAGACCATTCACCGGTTTCTGTCCCTCCGGTTGCAACTCCGACGGTCGGAACCGTTATGGACATTCCTGCTCTTAAG

mRNA sequence

ATGATCCGGCCTTCTAAACTGGATTTCTCTAAATTACCTATTTTGGTACACTTCTTTGATCTCCCTCTCGCTTGTATGATTAAAGCTATGGCAGTAAAACTTGGGAATACACTGGGTACTTTTGAAGAGGTGGATGAAGATGGTACCGGTCTATGTTGGGGATCAAGCTTGAGAGTTCGCCTTGACATCTCAAAACCTCTTCATCGAGATATAAAGCGTAATCTTGATGGCCTTATTGGTGGATGTTGGATCCCGATCCAATATGAGCGCCTACCGGATTTTTGTTTTCACTGTGGGAAGTTGATCACATTCTGA

Coding sequence (CDS)

ATGATCCGGCCTTCTAAACTGGATTTCTCTAAATTACCTATTTTGGTACACTTCTTTGATCTCCCTCTCGCTTGTATGATTAAAGCTATGGCAGTAAAACTTGGGAATACACTGGGTACTTTTGAAGAGGTGGATGAAGATGGTACCGGTCTATGTTGGGGATCAAGCTTGAGAGTTCGCCTTGACATCTCAAAACCTCTTCATCGAGATATAAAGCGTAATCTTGATGGCCTTATTGGTGGATGTTGGATCCCGATCCAATATGAGCGCCTACCGGATTTTTGTTTTCACTGTGGGAAGTTGATCACATTCTGA

Protein sequence

MIRPSKLDFSKLPILVHFFDLPLACMIKAMAVKLGNTLGTFEEVDEDGTGLCWGSSLRVRLDISKPLHRDIKRNLDGLIGGCWIPIQYERLPDFCFHCGKLITF

Homology

[Close]

BLAST of MC10g_new0197 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 144 bits (362), Expect = 2.98e-40
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MIRPSKLDFSKLPILVHFFDLPLACMIKAMAVKLGNTLGTFEEVDEDGTGLCWGSSLRVR 60
           + +P  +DF  + + VHFFDL LACM K MA +LGN +G FE+V+ +    CWGS LRVR
Sbjct: 116 LTKPLDMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVR 175

Query: 61  L--DISKPLHRDIKRNLDGLIGGCWIPIQYERLPDFCFHCGKL 101
           +  D+ KPLHR IK NLDG +GGCWIPIQYERLPDF +HCG+L
Sbjct: 176 VRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRL 218

[Close]

BLAST of MC10g_new0197 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 149 bits (375), Expect = 5.22e-39
Identity = 70/101 (69.31%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 1   MIRPSKLDFSKLPILVHFFDLPLACMIKAMAVKLGNTLGTFEEVDEDGTGLCWGSSLRVR 60
           +I PS+LDF+KLPI V FFDLPL C+ + MA++LGN LG FEE D D     WGS+LRVR
Sbjct: 116 LIPPSELDFTKLPIWVRFFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVR 175

Query: 61  --LDISKPLHRDIKRNLDGLIGGCWIPIQYERLPDFCFHCG 99
             LDISKPL R IK NLDG IGG WIPIQYERLPDFC+HCG
Sbjct: 176 VMLDISKPLRRGIKLNLDGPIGGAWIPIQYERLPDFCYHCG 216

[Close]

BLAST of MC10g_new0197 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 128 bits (322), Expect = 4.43e-33
Identity = 54/99 (54.55%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 5   SKLDFSKLPILVHFFDLPLACMIKAMAVKLGNTLGTFEEVDEDGTGLCWGSSLRVR--LD 64
           S+L+F+++   +H FDLP++ + K MA++LGN +G F +VD +  G  WG+SLR+R  +D
Sbjct: 119 SELEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLID 178

Query: 65  ISKPLHRDIKRNLDGLIGGCWIPIQYERLPDFCFHCGKL 101
           I+KPL R IK N+DG +GGCWIPIQYERLPDFC+ CG +
Sbjct: 179 ITKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVI 217

[Close]

BLAST of MC10g_new0197 vs. NCBI nr
Match: XP_028117212.1 (uncharacterized protein LOC114314884 [Camellia sinensis])

HSP 1 Score: 97.1 bits (240), Expect = 4.78e-22
Identity = 46/102 (45.10%), Postives = 66/102 (64.71%), Query Frame = 0


Query: 2   IRPSKLDFSKLPILVHFFDLPLACMIKAMAVKLGNTLGTFEEVDEDGTGLCWGSSLRVRL 61
           ++PS++ FS +   VH  +LPL  M + + V LGNTLG F +++    G+ WG +L +R+
Sbjct: 114 LQPSEITFSTMEFWVHASNLPLISMTRDVGVLLGNTLGKFVDMEYGDGGIAWGRALHIRI 173

Query: 62  DIS--KPLHRDIKRNLDGLIGGCWIPIQYERLPDFCFHCGKL 101
           +I+  KPL R +K  L G     WI +QYERLP+FCFHCG L
Sbjct: 174 EINIDKPLRRGLKLALGGQ-EPVWITLQYERLPNFCFHCGLL 214

[Close]

BLAST of MC10g_new0197 vs. NCBI nr
Match: XP_018824013.1 (uncharacterized protein LOC108993519 [Juglans regia] >KAF5454463.1 hypothetical protein F2P56_024125 [Juglans regia])

HSP 1 Score: 90.9 bits (224), Expect = 8.23e-20
Identity = 49/105 (46.67%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 2   IRPSKLDFSKLPILVHFFDLPLACMIKAMAVKLGNTLGTFEEVD--EDGTGLCWGSSLRV 61
           I P ++DFS+    V F DLP+ACM KA   KLG T+G   EV+  EDG+G  WGS LR+
Sbjct: 113 IPPQQMDFSRERFWVQFHDLPIACMNKAGGEKLGETVGRVLEVELQEDGSG--WGSFLRI 172

Query: 62  --RLDISKPLHRDIKRNLDGLIGGCWIPIQYERLPDFCFHCGKLI 102
              ++I KPL R     + G     WIP+++E+LP FCF CG +I
Sbjct: 173 LIEIEIEKPLARGRTIAIKGRT--YWIPLKFEKLPHFCFRCGSII 213

[Close]

BLAST of MC10g_new0197 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 1.44e-40
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 0


Query: 1   MIRPSKLDFSKLPILVHFFDLPLACMIKAMAVKLGNTLGTFEEVDEDGTGLCWGSSLRVR 60
           + +P  +DF  + + VHFFDL LACM K MA +LGN +G FE+V+ +    CWGS LRVR
Sbjct: 116 LTKPLDMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVR 175

Query: 61  L--DISKPLHRDIKRNLDGLIGGCWIPIQYERLPDFCFHCGKL 101
           +  D+ KPLHR IK NLDG +GGCWIPIQYERLPDF +HCG+L
Sbjct: 176 VRFDVMKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRL 218

[Close]

BLAST of MC10g_new0197 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 149 bits (375), Expect = 2.53e-39
Identity = 70/101 (69.31%), Postives = 79/101 (78.22%), Query Frame = 0


Query: 1   MIRPSKLDFSKLPILVHFFDLPLACMIKAMAVKLGNTLGTFEEVDEDGTGLCWGSSLRVR 60
           +I PS+LDF+KLPI V FFDLPL C+ + MA++LGN LG FEE D D     WGS+LRVR
Sbjct: 116 LIPPSELDFTKLPIWVRFFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVR 175

Query: 61  --LDISKPLHRDIKRNLDGLIGGCWIPIQYERLPDFCFHCG 99
             LDISKPL R IK NLDG IGG WIPIQYERLPDFC+HCG
Sbjct: 176 VMLDISKPLRRGIKLNLDGPIGGAWIPIQYERLPDFCYHCG 216

[Close]

BLAST of MC10g_new0197 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 128 bits (322), Expect = 2.15e-33
Identity = 54/99 (54.55%), Postives = 76/99 (76.77%), Query Frame = 0


Query: 5   SKLDFSKLPILVHFFDLPLACMIKAMAVKLGNTLGTFEEVDEDGTGLCWGSSLRVR--LD 64
           S+L+F+++   +H FDLP++ + K MA++LGN +G F +VD +  G  WG+SLR+R  +D
Sbjct: 119 SELEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLID 178

Query: 65  ISKPLHRDIKRNLDGLIGGCWIPIQYERLPDFCFHCGKL 101
           I+KPL R IK N+DG +GGCWIPIQYERLPDFC+ CG +
Sbjct: 179 ITKPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVI 217

[Close]

BLAST of MC10g_new0197 vs. ExPASy TrEMBL
Match: A0A2I4EX97 (uncharacterized protein LOC108993519 OS=Juglans regia OX=51240 GN=LOC108993519 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.99e-20
Identity = 49/105 (46.67%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 2   IRPSKLDFSKLPILVHFFDLPLACMIKAMAVKLGNTLGTFEEVD--EDGTGLCWGSSLRV 61
           I P ++DFS+    V F DLP+ACM KA   KLG T+G   EV+  EDG+G  WGS LR+
Sbjct: 113 IPPQQMDFSRERFWVQFHDLPIACMNKAGGEKLGETVGRVLEVELQEDGSG--WGSFLRI 172

Query: 62  --RLDISKPLHRDIKRNLDGLIGGCWIPIQYERLPDFCFHCGKLI 102
              ++I KPL R     + G     WIP+++E+LP FCF CG +I
Sbjct: 173 LIEIEIEKPLARGRTIAIKGRT--YWIPLKFEKLPHFCFRCGSII 213

[Close]

BLAST of MC10g_new0197 vs. ExPASy TrEMBL
Match: A0A2I4DG64 (uncharacterized protein LOC108979833 OS=Juglans regia OX=51240 GN=LOC108979833 PE=4 SV=2)

HSP 1 Score: 89.4 bits (220), Expect = 3.12e-19
Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 0


Query: 2   IRPSKLDFSKLPILVHFFDLPLACMIKAMAVKLGNTLGTFEEVDE--DGTGLCWGSSLRV 61
           I P K+DFS+  + +   +LPLACM K   V +G T+G   EV+   DG+G  WGS LR+
Sbjct: 113 IPPQKMDFSRERMWIQLHNLPLACMNKDRGVVMGETIGRVLEVETLVDGSG--WGSFLRI 172

Query: 62  --RLDISKPLHRDIKRNLDGLIGGCWIPIQYERLPDFCFHCGKLI 102
              LD+ KPL R     + G +   WIP++YE+LP FCF CG +I
Sbjct: 173 LTELDLKKPLARGRTITIKGQV--LWIPVKYEKLPHFCFRCGCII 213

The following BLAST results are available for this feature:

BLAST of MC10g_new0197 vs.


Match Name	E-value	Identity	Description

BLAST of MC10g_new0197 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132681.1	2.98e-40	60.19	uncharacterized protein LOC111005481 [Momordica charantia]	[more]
XP_022158377.1	5.22e-39	69.31	uncharacterized protein LOC111024874 [Momordica charantia]	[more]
XP_022156185.1	4.43e-33	54.55	uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha...	[more]
XP_028117212.1	4.78e-22	45.10	uncharacterized protein LOC114314884 [Camellia sinensis]	[more]
XP_018824013.1	8.23e-20	46.67	uncharacterized protein LOC108993519 [Juglans regia] >KAF5454463.1 hypothetical ...	[more]

BLAST of MC10g_new0197 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSZ1	1.44e-40	60.19	uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A6J1DX30	2.53e-39	69.31	uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DU55	2.15e-33	54.55	uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A2I4EX97	3.99e-20	46.67	uncharacterized protein LOC108993519 OS=Juglans regia OX=51240 GN=LOC108993519 P...	[more]
A0A2I4DG64	3.12e-19	44.76	uncharacterized protein LOC108979833 OS=Juglans regia OX=51240 GN=LOC108979833 P...	[more]

BLAST of MC10g_new0197 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025836	Zinc knuckle CX2CX4HX4C	PFAM	PF14392	zf-CCHC_4	coord: 61..100 e-value: 1.5E-6 score: 27.8
None	No IPR available	PANTHER	PTHR31286:SF26	BNAC07G15150D PROTEIN	coord: 13..101
IPR040256	Uncharacterized protein At4g02000-like	PANTHER	PTHR31286	GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE	coord: 13..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC10g_new0197.1	MC10g_new0197.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding