MC10g_new0035 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC10g_new0035
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description3-ketoacyl-CoA synthase
LocationMC10: 1328392 .. 1330505 (+)
RNA-Seq ExpressionMC10g_new0035
SyntenyMC10g_new0035
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCATAGTACTTTTTTTTTTCCATAGTTGGTCGACGAAGGTCCTTCAAAAATCAACCAATATAAACATACTTTGATCAGATAAGCTATATAAGAAGGTCAAAAGGACAAATAAATCATACAAAGGGCACGATTAAATAAAACAAAAAACGTTATTTTTTTCTTCTCTCTCTCTCTCTTGAGATAAACCCGAAGAGCTAGGTTGGTGGGCCTGAAATTGGATTCTGGATTACTTCGGCCCATGGATCATTGTTGGACTCTCCAACAATGGGCCGTATAGACTCCCAAATCAAACTAACACATTTGGGCCCAGTGCCCATCCCTAATTGCCAGACTCTGTCCCCTTTTCCAATTCTTTCTTGATCTTCCAAATACGCGAGTTCATACCACAGCGAAGAAGACGACTGGTTCCCAAATCTATGCAGAGTCATCAATGCCGCTTCCATGTCCTTGTCCTTAAGCTTCAGCATTTTTCCGATCTCCCGTATCACCGGACCTCCCGATACCGGCAAGCAGAAATGCTGAATCACACTCTTGAAATTGGGCACGTAGATTTCTTGCGATTTGTCCAGAAATCGCTTTCCGAGCCTCGAAACGCCGTGCCGTAGTTTCTCCGACAACGGCAAGACTGAATCACCCAGAATGGTTATGTTTGACCGGAGAGTTTCTCCGGCAACCTGGAGTAAATCCCTTGTGAGAGTGACGCCGAGCTTTCCGTCCATGTCATCTTCGCGTATGGCTGAAAGGTAACTTTTATCGTCGAAAGCTCTCTGTGTTCGAACCGTTTTAAATAGTTTATATTTTGAAGAATCCTTCGCCTCTTTTCTATTGGTGAGCAGAATGGCTCCGCTGCCCATTCGGAAGAGGCAATTAAGGATCAATTTTGAGCGTTCCTTTCCTGCATACCAACCGTTCGACAAAATTTCTGTACTGAGTACAACGGCATTCGAATTTTTGTGAACTTGAAGGAGACTTTCAGCTAAATGAATGGCAACAGCACTGGCACTGCACCCCATTCCGGAGAGATTGAAGCTCTTAATATCACTTCTCATGGAATATTTGTTGATAACTATGGAGGACAGACAAGGAGAAGGACAAAAGCCACTGCAATTGACGATCAGAATATCAATGTCACGAGGAGAGAGATGGGTTTTGGTCAAAAGATCGTCCATGACAGGAAACAGAACCATATGGGCTTCATTAATGGATTCCTGTTGATGGGTTTTGGGTGGAATGAAGTGCAGGGCTGGAGGGAGGCATGTTTCTTCACTTTGTCCAGAGGATTTAAGAGTTTTGGCCATGAAACAGAGGCTCTCACTGTCAAAAATATCCATCAAAGTAGCATTTTCAAGGAAAGTAGAGAAGGGAACCCTGAAGAAACTAGGCGGTTTGAGGCATGAGAAGTCAACTAAATAGACTGAACGAGGAGCAATATTCAAGATGGAAGGGTGGTTGATGATTATGATGAAGACGACAAGAGAAGACAGCGGGAAGATATGGAAAATGGGATTCCATCCTTCTAAGAAAAGATAGGCTTCAATGGAAGTTAGGAGAACGAAAAGGATTTGAAGTTGAAAGAAAGTGAAGCGAAGGGGTTTGAGTAATTGAGTGGAATGGAGGAGAGTGCCGCCATGGATGACCTCGGGAGCAGATTCCATTGGTTATGGATGGAGGAAGGGTGGTGGGGTGGCTATGGAGGAATGGGAATTTGAATTTGAATGGTGTGAAAATGGAAGTGGTGGTTAAATGAAGGGTCTCAGTAAGTTTGGTAATTTTTCTTTGCTCGATGTACAGTTGGCAGGAAACAGGTGAAAACTTTAATTTGATGTAATGCTTCACCAGGAAGTAATTACTATTAACGATGGGGTCAAAAAAAAAAGAAACCTTTTTATTTTGGTTCAAGTAATAGTTACCTAGGCTGTCGAAACTTGAAAATTTCTGGTAATACGAGGGATATATATATATATTTTTTCTTACATTTGAGGACAGATCGAATTCAAATTTCTTGGTTGGATGATGTATGCTCGTTTTTGCGAGGGATATAAATACTCCGTATCGTGTGAGACCAATTGTAATGTGAGCGAATTAGGTATGGTACTCTAGTTTTATAACTTAT

mRNA sequence

ATGAATGGCAACAGCACTGGCACTGCACCCCATTCCGGAGAGATTGAAGCTCTTAATATCACTTCTCATGGAATATTTGTTGATAACTATGGAGGACAGACAAGGAGAAGGACAAAAGCCACTGCAATTGACGATCAGAATATCAATGTCACGAGGAGAGAGATGGGTTTTGGTCAAAAGATCGTCCATGACAGGAAACAGAACCATATGGGCTTCATTAATGGATTCCTGTTGATGGGTTTTGGGTGGAATGAAGTGCAGGGCTGGAGGGAGGCATGTTTCTTCACTTTGTCCAGAGGATTTAAGAGTTTTGGCCATGAAACAGAGGCTCTCACTGTCAAAAATATCCATCAAAGTAGCATTTTCAAGGAAAGTAGAGAAGGGAACCCTGAAGAAACTAGGCGGTTTGAGGCATGA

Coding sequence (CDS)

ATGAATGGCAACAGCACTGGCACTGCACCCCATTCCGGAGAGATTGAAGCTCTTAATATCACTTCTCATGGAATATTTGTTGATAACTATGGAGGACAGACAAGGAGAAGGACAAAAGCCACTGCAATTGACGATCAGAATATCAATGTCACGAGGAGAGAGATGGGTTTTGGTCAAAAGATCGTCCATGACAGGAAACAGAACCATATGGGCTTCATTAATGGATTCCTGTTGATGGGTTTTGGGTGGAATGAAGTGCAGGGCTGGAGGGAGGCATGTTTCTTCACTTTGTCCAGAGGATTTAAGAGTTTTGGCCATGAAACAGAGGCTCTCACTGTCAAAAATATCCATCAAAGTAGCATTTTCAAGGAAAGTAGAGAAGGGAACCCTGAAGAAACTAGGCGGTTTGAGGCATGA

Protein sequence

MNGNSTGTAPHSGEIEALNITSHGIFVDNYGGQTRRRTKATAIDDQNINVTRREMGFGQKIVHDRKQNHMGFINGFLLMGFGWNEVQGWREACFFTLSRGFKSFGHETEALTVKNIHQSSIFKESREGNPEETRRFEA
Homology
BLAST of MC10g_new0035 vs. NCBI nr
Match: RAL46595.1 (hypothetical protein DM860_004874 [Cuscuta australis])

HSP 1 Score: 72.0 bits (175), Expect = 5.18e-12
Identity = 46/135 (34.07%), Postives = 68/135 (50.37%), Query Frame = 0

Query: 1   MNGNSTGTAPHSGEIEALNITSHGIFVDNYGGQTRRRTKATAIDDQNINVTRREMGFGQK 60
           ++GN  G A H+G+IEA +IT H I VD++GGQ RRR +   +DDQNI+  R       +
Sbjct: 67  IDGNQAGAAAHAGKIEAFHITPHLIPVDHHGGQRRRRGEQATVDDQNIHFFRGNPSLPHQ 126

Query: 61  IVHDRKQNHMGFINGFLLMGFGWNEVQGWREACFFTLSRGFKSFGHETEALTVKNIHQSS 120
            +H  + + +  + G L  G   N V+  RE      +   +    E  AL      +S 
Sbjct: 127 RIHGGEYDRLRLLPGSLQGGRRRNAVKRRREGSLLPDAGALQDPHLELHALRAVLQDESR 186

Query: 121 IFKESREGNPEETRR 135
           +  E REG+P   RR
Sbjct: 187 MLHERREGDPVRDRR 201

BLAST of MC10g_new0035 vs. NCBI nr
Match: VAI08259.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 58.5 bits (140), Expect = 5.04e-07
Identity = 37/131 (28.24%), Postives = 67/131 (51.15%), Query Frame = 0

Query: 1   MNGNSTGTAPHSGEIEALNITSHGIFVDNYGGQTRRRTKATAIDDQNINVTRREMGFGQK 60
           ++G+  G A H+GE+EA ++ +  + VD++GG+  RR +  A+DD++++V   E     +
Sbjct: 21  VDGDEPGAASHAGEVEAADVAAELVLVDDHGGERGRRGEEAAVDDEDVDVLGLEARAADE 80

Query: 61  IVHDRKQNHMGFINGFLLMGFGWNEVQGWREACFFTLSRGFKSFGHETEALTVKNIHQSS 120
           +V   + + +    G L  G G + V G  EA     +   +    E +AL V    +  
Sbjct: 81  VVDGVEDDELRLGAGRLHAGVGRDVVVGRWEAGLLPEAGALEDACLEAQALVVVG-DELD 140

Query: 121 IFKESREGNPE 131
           +  E  EG+PE
Sbjct: 141 VLHEGGEGHPE 150

BLAST of MC10g_new0035 vs. NCBI nr
Match: KAB8102976.1 (hypothetical protein EE612_035136, partial [Oryza sativa])

HSP 1 Score: 58.2 bits (139), Expect = 1.01e-06
Identity = 32/91 (35.16%), Postives = 48/91 (52.75%), Query Frame = 0

Query: 1   MNGNSTGTAPHSGEIEALNITSHGIFVDNYGGQTRRRTKATAIDDQNINVTRREMGFGQK 60
           ++G   GTAPH  E+ A +I    + V N+GGQ RRR +  AIDD + NV        +K
Sbjct: 160 IDGQQAGTAPHPAEVVADDIPPQLVVVHNHGGQRRRRVEQAAIDDNHTNVLGLHTRLLKK 219

Query: 61  IVHDRKQNHMGFINGFLLMGFGWNEVQGWRE 91
           +V+  + +  G + G +  G G +   G RE
Sbjct: 220 LVNGAEHDGAGLLAGLVHAGVGRDAQHGGRE 250

BLAST of MC10g_new0035 vs. NCBI nr
Match: KAB8090846.1 (hypothetical protein EE612_016172, partial [Oryza sativa] >BAS83010.1 Os03g0220200, partial [Oryza sativa Japonica Group])

HSP 1 Score: 56.6 bits (135), Expect = 2.28e-06
Identity = 40/138 (28.99%), Postives = 68/138 (49.28%), Query Frame = 0

Query: 1   MNGNSTGTAPHSGEIEALNITSHGIFVDNYGGQTRRRTKATAIDDQNINVTRREMGFGQK 60
           + G+  G A H+G++EA ++ +  + VD++GG+ R R + TA+DD++++V   E G   +
Sbjct: 10  VEGDEAGAAAHAGQVEAADVAAELVLVDDHGGERRCRGEETAVDDEDVDVLGLESGAADE 69

Query: 61  IVHDRKQNHMGFINGFLLMGFGWNEVQGWREACFFTLSRGFKSFGHETEALTVKNIHQSS 120
           +V   +   +G     L      + V G REA      R  +  G E  AL V    ++ 
Sbjct: 70  VVDGGEDYELGLGARRLHGRVRRDVVVGRREAGLLPEPRPLEDPGLEPHALLVVG-DEAR 129

Query: 121 IFKESREGNPEETRRFEA 138
           +  E  E +P   RR  A
Sbjct: 130 VLHERGERHPAAGRRLVA 146

BLAST of MC10g_new0035 vs. NCBI nr
Match: BAS98478.1 (Os06g0598850, partial [Oryza sativa Japonica Group])

HSP 1 Score: 55.1 bits (131), Expect = 1.20e-05
Identity = 31/91 (34.07%), Postives = 47/91 (51.65%), Query Frame = 0

Query: 1   MNGNSTGTAPHSGEIEALNITSHGIFVDNYGGQTRRRTKATAIDDQNINVTRREMGFGQK 60
           ++G   GTAPH  E+ A +I    + V N+GGQ RRR +  AIDD + NV        +K
Sbjct: 160 IDGQQAGTAPHPAEVVADDIPPQLVVVHNHGGQRRRRVEQAAIDDNHTNVLGLHTRLLKK 219

Query: 61  IVHDRKQNHMGFINGFLLMGFGWNEVQGWRE 91
           +V+  + +  G + G +    G +   G RE
Sbjct: 220 LVNGAEHDGAGLLAGLVHARVGRDAQHGGRE 250

BLAST of MC10g_new0035 vs. ExPASy TrEMBL
Match: A0A5K0X182 (Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS4840 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.09e-14
Identity = 43/138 (31.16%), Postives = 76/138 (55.07%), Query Frame = 0

Query: 1   MNGNSTGTAPHSGEIEALNITSHGIFVDNYGGQTRRRTKATAIDDQNINVTRREMGFGQK 60
           ++G   G A H+G++EA ++  H + VD++GGQ  RR +  A+ D++++V   +    ++
Sbjct: 187 VDGYQPGAAAHAGKVEAADVAPHLVLVDDHGGQRGRRREEAAVHDEDVDVLGPDARLLEQ 246

Query: 61  IVHDRKQNHMGFINGFLLMGFGWNEVQGWREACFFTLSRGFKSFGHETEALTVKNIHQSS 120
           +V  R+ + +G   G L +GF W  V+  REA      R  ++   E +AL V+ + +  
Sbjct: 247 VVQGREDDELGLRPGVLHVGFRWEVVERRREAGVLAEPRPLENPHLEADALLVEVLQEVG 306

Query: 121 IFKESREGNPEETRRFEA 138
           +  E  EG+P   RR EA
Sbjct: 307 VLHEGGEGHPAGDRRLEA 324

BLAST of MC10g_new0035 vs. ExPASy TrEMBL
Match: A0A328DLP5 (Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_004874 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.51e-12
Identity = 46/135 (34.07%), Postives = 68/135 (50.37%), Query Frame = 0

Query: 1   MNGNSTGTAPHSGEIEALNITSHGIFVDNYGGQTRRRTKATAIDDQNINVTRREMGFGQK 60
           ++GN  G A H+G+IEA +IT H I VD++GGQ RRR +   +DDQNI+  R       +
Sbjct: 67  IDGNQAGAAAHAGKIEAFHITPHLIPVDHHGGQRRRRGEQATVDDQNIHFFRGNPSLPHQ 126

Query: 61  IVHDRKQNHMGFINGFLLMGFGWNEVQGWREACFFTLSRGFKSFGHETEALTVKNIHQSS 120
            +H  + + +  + G L  G   N V+  RE      +   +    E  AL      +S 
Sbjct: 127 RIHGGEYDRLRLLPGSLQGGRRRNAVKRRREGSLLPDAGALQDPHLELHALRAVLQDESR 186

Query: 121 IFKESREGNPEETRR 135
           +  E REG+P   RR
Sbjct: 187 MLHERREGDPVRDRR 201

BLAST of MC10g_new0035 vs. ExPASy TrEMBL
Match: A0A2P2Q392 (3-ketoacyl-CoA synthase OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 6.56e-09
Identity = 28/72 (38.89%), Postives = 48/72 (66.67%), Query Frame = 0

Query: 1  MNGNSTGTAPHSGEIEALNITSHGIFVDNYGGQTRRRTKATAIDDQNINVTRREMGFGQK 60
          +N +   T  H  +I+A +ITS  +FV+N+GG+ RRR +  AI ++NIN+ R + GF ++
Sbjct: 10 VNRDQASTTSHPRKIKAFDITSKLVFVNNHGGKRRRRREKAAIYNENINIFRLKPGFTEE 69

Query: 61 IVHDRKQNHMGF 72
           +H R+ + +GF
Sbjct: 70 RIHGREDHKLGF 81

BLAST of MC10g_new0035 vs. ExPASy TrEMBL
Match: A0A446SB13 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_4Bv1G146470 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.44e-07
Identity = 37/131 (28.24%), Postives = 67/131 (51.15%), Query Frame = 0

Query: 1   MNGNSTGTAPHSGEIEALNITSHGIFVDNYGGQTRRRTKATAIDDQNINVTRREMGFGQK 60
           ++G+  G A H+GE+EA ++ +  + VD++GG+  RR +  A+DD++++V   E     +
Sbjct: 21  VDGDEPGAASHAGEVEAADVAAELVLVDDHGGERGRRGEEAAVDDEDVDVLGLEARAADE 80

Query: 61  IVHDRKQNHMGFINGFLLMGFGWNEVQGWREACFFTLSRGFKSFGHETEALTVKNIHQSS 120
           +V   + + +    G L  G G + V G  EA     +   +    E +AL V    +  
Sbjct: 81  VVDGVEDDELRLGAGRLHAGVGRDVVVGRWEAGLLPEAGALEDACLEAQALVVVG-DELD 140

Query: 121 IFKESREGNPE 131
           +  E  EG+PE
Sbjct: 141 VLHEGGEGHPE 150

BLAST of MC10g_new0035 vs. ExPASy TrEMBL
Match: A0A0P0VV32 (Os03g0220200 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0220200 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.10e-06
Identity = 40/138 (28.99%), Postives = 68/138 (49.28%), Query Frame = 0

Query: 1   MNGNSTGTAPHSGEIEALNITSHGIFVDNYGGQTRRRTKATAIDDQNINVTRREMGFGQK 60
           + G+  G A H+G++EA ++ +  + VD++GG+ R R + TA+DD++++V   E G   +
Sbjct: 10  VEGDEAGAAAHAGQVEAADVAAELVLVDDHGGERRCRGEETAVDDEDVDVLGLESGAADE 69

Query: 61  IVHDRKQNHMGFINGFLLMGFGWNEVQGWREACFFTLSRGFKSFGHETEALTVKNIHQSS 120
           +V   +   +G     L      + V G REA      R  +  G E  AL V    ++ 
Sbjct: 70  VVDGGEDYELGLGARRLHGRVRRDVVVGRREAGLLPEPRPLEDPGLEPHALLVVG-DEAR 129

Query: 121 IFKESREGNPEETRRFEA 138
           +  E  E +P   RR  A
Sbjct: 130 VLHERGERHPAAGRRLVA 146

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
RAL46595.15.18e-1234.07hypothetical protein DM860_004874 [Cuscuta australis][more]
VAI08259.15.04e-0728.24unnamed protein product [Triticum turgidum subsp. durum][more]
KAB8102976.11.01e-0635.16hypothetical protein EE612_035136, partial [Oryza sativa][more]
KAB8090846.12.28e-0628.99hypothetical protein EE612_016172, partial [Oryza sativa] >BAS83010.1 Os03g02202... [more]
BAS98478.11.20e-0534.07Os06g0598850, partial [Oryza sativa Japonica Group][more]
Match NameE-valueIdentityDescription
A0A5K0X1821.09e-1431.16Uncharacterized protein (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS48... [more]
A0A328DLP52.51e-1234.07Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_004874 PE=4 SV=1[more]
A0A2P2Q3926.56e-0938.893-ketoacyl-CoA synthase OS=Rhizophora mucronata OX=61149 PE=4 SV=1[more]
A0A446SB132.44e-0728.24Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_4Bv1G... [more]
A0A0P0VV321.10e-0628.99Os03g0220200 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os03... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC10g_new0035.1MC10g_new0035.1mRNA