MC10g1052 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC10g1052
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	reactive Intermediate Deaminase A, chloroplastic-like
Location	MC10: 10517508 .. 10521727 (+)
RNA-Seq Expression	MC10g1052
Synteny	MC10g1052

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATTATCTGGGACATGATAAAAAGAAGGAAAGAAGGTTTTTTCTCTGTTAAAATCGCCAAAGGACAAAAAGAAAAAAATAATAGAAAAAAAAAATCCAAGCTTCTTTTATGGTTCTCTTCTCAAATTGTAATTTAAATGAGACGTTTTTGCTAATTACCAAAACATAAACACAGCGAGGGGCTCAGTGCGAACAGCCAGAAGCAGAACGAAAGCGACACAGATGGCTTGGTGTGCGGCTCGGACCTTCCACATGCCGGCGTTCGACGTCACTGCGCTCCGCTCCAAGACCCCGCTAGCCGTCGGCGTCGGTTGCGCTTCCGTCGCCGGCACCACCTTGTGGCGATCTTCATCAACTTCCCCTGCTTCCAAGCGCCAAATGCCGTTCGCATCCCTTGGCATTTCCGCGGATACTTGTACGCCCTTTCTTCTCTCCTTTTTTTTTTTTTTTCTTTTCGTTTTCTGTTCAGCTGCTGAGAGAATTTTCGCTGCTATCTCAGAGAAATCGGATTGTTAATTACCTTTTTCTATTGTCCTTGGACGGATTTTGTATGGTTTGATTTGAGTTTCTACTGACAAGTTATTAAAGCTCTGATATCTGGCCTTTCTTTGGGATTAGATTTAACGCTTGGTGGTGAAATAATAGATTATTGGTATTCTTTCCCCTTTCTGTGCAAGAAAACTGTAATATCGGGAAACATTGTAATTTGTACGAAATGTGCAGCTAATTCAGTTCTTTTCATCTTAAAATTAGAAACCTCATCGTTAACACTCTAGAATGGTATGGTGCAGGCAGCGGGTATAAACTTGGGCATTCACATCCTAAATCACCAAAATAATTTTGAGTTAGAATTATGTACTTGATTTAAAATTTTAATTTTGATCATCCATTTTTAACTAAAAACTAATTAATTTCTAAATGTGATATGAAGATATGTATTGAACACAATATTATTAGTCAGTTCAACTTACTCGTACAAAATTAGTTCTTCATAATAATAAATAAACAAAAATCTGATGGGCAACCAAGACTTTCAGTGCACCATACGTATACAAGGAGGATGTTGGATAATGTCGGGAATAAAGGGGACAAGGTGTAGGACAGCGGTTATGAGAGAGTATGCGGAGTGCTGTATACTTGTCCTTCCCTGATTGTAATGTGCTAGAATGGGAATAGGCCACATAGGGATCAGCGTATTTGACGTGGGCTTGGAGCCTTGCATGTGTATCAGATTATTTTGTGTTTTTGGCTTAGAATTTCCTTCCAACGAAGAGAGCATCTGACCTCTCTAAGAGTTAGTAGACTTGTTCTTGCTGATTTTATTTCGTTAAATGAATTTTCATCAATAGGCCTTTTCGGTTCCCATCAAAATCTAAATAGGCATTAAGTAAATTCAAATAGACAACACTTATTCAATTGCCTCCAAGTGTTTTGGAGATATACAGGCTGTTAGTATCTCTTTTTGGATAGTTTTCCTTCCCTGATTGTTGTCGTGTGCTGAATGTTTCAAAACAGACGCATAACCACCACTTAATGTCAACGTCTTTTGTGGCAGGTATCAAGGAAGCTGTTCAGACTGACAAGGCTCCAGCAGCATTAGGGCCATATTCTCAGGCTATCAAAGCCAACAACCTTCTCTTTGTGTCTGGTGTCCTAGGTCTAAATCCTGAGGTAGCTTCATCACTTTATGATTGTTATTCCCTTTTATTTGATTGTGCTTACGTGTTGATTCAACCTAAACATTGCTCGAGGGATTAGGGTTAGACATTAGTGCCTCCAGTATAAATCTCACAATCTTGATTTGTAATTGATATTGTAAAAAGGAAAAAAAAGAAGAAGGATGAAGTGGGTTTCTCTTTGTGTGCGTGTGCATGTTGTCATGATGTCTAACATAATGTGTGTCCTCATGTTTGAATGCAGACAGGGAAATTTGTCTCAGATGATGTTGAAGGCCAAACTGAGCAGGTATATCCTTGTCCTTGTAGATCAAAATTTTGAGCTGAATATCAAAACTTCTAAGTTAATGAAATATTGCAGGTCCTCAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCTAGCTATGCTTCAGTGGTTAAGACGACCATTATGTATGAAAATTTGGCCTCTTTGCTTTATGATCTTAATATTTGAAGAGTAGGGAGTTGTTTGGTAGTTGTTCTAAAAAATGGTTTCATGGTATTGTCTACTTTTAGGAACAACATTTGAGTGGCTGATAAAAGTTAAGATTGTTTGACCCAACAAGCACTATTTACAATCTCATAATTTTGGAATGAAGAACAAATTTAGTTATTCTAAAGGTCTAGGTCATATTTCCCAATTTTTAGTAGCTATTCTCTAAATGATCTTATTACAAGTTGGAAAGCTCTCTTATAATTGCCCATGTGGCCTTTTGTATATTTCATACCATCAATGAAATATTTGTTTCATATCAAAAAAAAAAAAAAAAAAGGTCTAGGTCCGATTTTAGTCTAAAAAATTTCATGTTTATTGTATTTTACTTCCATATTTATCAACCTTTTGTTTTAGCCTCTTACACTTTATATTAAAAGTCATTTTAGTCTTTATAATTATTTTTGCATAAATCACTTTATGGAAGCTTGACAAAGTATATCTTTTGATAATTTACTTGATGAGTAGACGTCCATGTGAACAAGTAGTATTTGAAAGTAGATGTAATAAGTTATTTTTTGAGGATCAAAATGGATGAAGACTTTTGTTAAATAATTAATTGAAAATCAATGATATGAATGAAAAATACGTTTATAGAAGAGTGTAGGGACTAGAATGTTTAAAATTCAGAGACTTGAAGAATGAGTATCAAAAGTTATGGACAAAAATAGGATTCTATTCTAAGAAATATGTCATCTTTATGAGAGAACAATTCTTAGACGATATTGATAGAAACTCCTTTTTATTATTTATGATTAGAGGGATTACAAGGGTCTAGGGAGAATTGGAGAGCTCCCTGATCTCTCCCAAACATTCCTACAGACAATAGCCTGAAAAGATAAAACACCTACCTCTCTACAAGGAGTATATACCTTAACAGCATGCCCAAAATACCCTTTCTTACCCGTACACTGGTCCCTCCCCTCTAACAGAATTCTTACTTTTTCTCTGCTATACCCGCGTGTCTCTTCCTCCTATAGTAAACGTTCATCACCCTAGGTCTATCAGATATTTACCTAGACCCATTTTCAATAATGGATTGTTCTAAAAGTATTGAAAAAGATCTTTCAGAACATAACCAAGCAGCCCTACGTTTTTCCACTGATTCAGTTATTTATTCACAATTATTTCTTGCAGGTTGGCTGATCTGAAGGATTTCAAGAAAGTAAACGAGATTTATGCTAAATGTAAGTTTTGTTAAACTTAAACTGAATCTCTAATCTCTCAGTTATCGGATGCTGAGCATTTAGCTTAGATATGCCTTTATGATCACCCTCTGTGCCCATTACAGTTCAACTTTAGTTTCTAGAGTATAGTTATTTTAGTAAATTTAAAATTTGCATCTTCGATGAATTTGTATATGATTCTACTTGGAGAATAAGATGAACTTTTCTTTTTACCTATTTTTCTGGCTGTGTGAAATTACCCACATGGTGGTTACTTCGATACTTTGATATATTGGTTCATGGTTTTCTTTTGATCCAATTGTTGCGGGTCAGTTGATGAAAAGTGGATGTTCTATTTACTGAAGGGTAATTGAAATCACGATGAATTGATGATTCTATGATTCTATCCATATTGCTTTGATATATTCTCTTGAGATAAGAATGTATTCTTCAACTAAAAAATCTGTGATTTCCTCAGATTGATGACATTAACTTCATTTTTAGTGACTTCAAGCTGAAGTTGACATGGTTTTCACATTGGTTTTGTTTGCTAATTTTTATGCAGACTTTCTGTCCCCTGCTCCAGCTCGGTCAACATTTCAGGTTGCAGCATTGCCTTTGGATGCTAAGGTTGAAATCGAGTGCATCGCTACACTTTGAACTCTAACCTAATTTCAGGTACCCAGTTTTCAAGACATCATAAACTAATAAGTTGGAGATAGCAATCACACAAATTCCCACATTAAATTTTGCTTCTGTATTCTCTGAGACTTTCTTGTTATAGCATTTTGTGACCACTTGACAGTCATCTGCATGCTTTTTACCTGTGGAATAGAAGTTAGATGAACAAACCAACTGTCC

mRNA sequence

AGATTATCTGGGACATGATAAAAAGAAGGAAAGAAGCGAGGGGCTCAGTGCGAACAGCCAGAAGCAGAACGAAAGCGACACAGATGGCTTGGTGTGCGGCTCGGACCTTCCACATGCCGGCGTTCGACGTCACTGCGCTCCGCTCCAAGACCCCGCTAGCCGTCGGCGTCGGTTGCGCTTCCGTCGCCGGCACCACCTTGTGGCGATCTTCATCAACTTCCCCTGCTTCCAAGCGCCAAATGCCGTTCGCATCCCTTGGCATTTCCGCGGATACTTGTATCAAGGAAGCTGTTCAGACTGACAAGGCTCCAGCAGCATTAGGGCCATATTCTCAGGCTATCAAAGCCAACAACCTTCTCTTTGTGTCTGGTGTCCTAGGTCTAAATCCTGAGACAGGGAAATTTGTCTCAGATGATGTTGAAGGCCAAACTGAGCAGGTCCTCAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCTAGCTATGCTTCAGTGGTTAAGACGACCATTATGTTGGCTGATCTGAAGGATTTCAAGAAAGTAAACGAGATTTATGCTAAATACTTTCTGTCCCCTGCTCCAGCTCGGTCAACATTTCAGGTTGCAGCATTGCCTTTGGATGCTAAGGTTGAAATCGAGTGCATCGCTACACTTTGAACTCTAACCTAATTTCAGGTACCCAGTTTTCAAGACATCATAAACTAATAAGTTGGAGATAGCAATCACACAAATTCCCACATTAAATTTTGCTTCTGTATTCTCTGAGACTTTCTTGTTATAGCATTTTGTGACCACTTGACAGTCATCTGCATGCTTTTTACCTGTGGAATAGAAGTTAGATGAACAAACCAACTGTCC

Coding sequence (CDS)

ATGATAAAAAGAAGGAAAGAAGCGAGGGGCTCAGTGCGAACAGCCAGAAGCAGAACGAAAGCGACACAGATGGCTTGGTGTGCGGCTCGGACCTTCCACATGCCGGCGTTCGACGTCACTGCGCTCCGCTCCAAGACCCCGCTAGCCGTCGGCGTCGGTTGCGCTTCCGTCGCCGGCACCACCTTGTGGCGATCTTCATCAACTTCCCCTGCTTCCAAGCGCCAAATGCCGTTCGCATCCCTTGGCATTTCCGCGGATACTTGTATCAAGGAAGCTGTTCAGACTGACAAGGCTCCAGCAGCATTAGGGCCATATTCTCAGGCTATCAAAGCCAACAACCTTCTCTTTGTGTCTGGTGTCCTAGGTCTAAATCCTGAGACAGGGAAATTTGTCTCAGATGATGTTGAAGGCCAAACTGAGCAGGTCCTCAAAAATATGGGTGAAATATTGAAAGCTGGAGGTGCTAGCTATGCTTCAGTGGTTAAGACGACCATTATGTTGGCTGATCTGAAGGATTTCAAGAAAGTAAACGAGATTTATGCTAAATACTTTCTGTCCCCTGCTCCAGCTCGGTCAACATTTCAGGTTGCAGCATTGCCTTTGGATGCTAAGGTTGAAATCGAGTGCATCGCTACACTTTGA

Protein sequence

MIKRRKEARGSVRTARSRTKATQMAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSPASKRQMPFASLGISADTCIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEGQTEQVLKNMGEILKAGGASYASVVKTTIMLADLKDFKKVNEIYAKYFLSPAPARSTFQVAALPLDAKVEIECIATL

Homology

[Close]

BLAST of MC10g1052 vs. ExPASy Swiss-Prot
Match: Q94JQ4 (Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RIDA PE=1 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.1e-65
Identity = 138/193 (71.50%), Postives = 157/193 (81.35%), Query Frame = 0


Query: 24  MAWCAARTFHMPAFDV-TALRS-KTPL-AVGVGCASVAGTTLWRSSSTSPASKRQMPFAS 83
           M W   R+ + P  D+ TALRS +TPL A GVGCA+ AG +L+R SS SP      PFAS
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFRMSSRSP------PFAS 60

Query: 84  LGISADTCIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEGQTE 143
           L +SA +  KE V T+KAPAALGPYSQAIKANNL+F+SGVLGL PETGKFVS+ VE QTE
Sbjct: 61  LSVSASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTE 120

Query: 144 QVLKNMGEILKAGGASYASVVKTTIMLADLKDFKKVNEIYAKYFLSPAPARSTFQVAALP 203
           QVLKNMGEILKA GA Y+SVVKTTIMLADL DFK VNEIYAKYF +P+PARST+QVAALP
Sbjct: 121 QVLKNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALP 180

Query: 204 LDAKVEIECIATL 214
           L+AK+EIECIATL
Sbjct: 181 LNAKIEIECIATL 187

[Close]

BLAST of MC10g1052 vs. ExPASy Swiss-Prot
Match: P52758 (2-iminobutanoate/2-iminopropanoate deaminase OS=Homo sapiens OX=9606 GN=RIDA PE=1 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.3e-31
Identity = 63/123 (51.22%), Postives = 90/123 (73.17%), Query Frame = 0


Query: 89  IKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEGQTEQVLKNMGE 148
           I+  + T KAP A+GPYSQA+  +  +++SG +G++P +G+ VS  V  + +Q LKNMGE
Sbjct: 5   IRRVISTAKAPGAIGPYSQAVLVDRTIYISGQIGMDPSSGQLVSGGVAEEAKQALKNMGE 64

Query: 149 ILKAGGASYASVVKTTIMLADLKDFKKVNEIYAKYFLSPAPARSTFQVAALPLDAKVEIE 208
           ILKA G  + +VVKTT++LAD+ DF  VNEIY +YF S  PAR+ +QVAALP  +++EIE
Sbjct: 65  ILKAAGCDFTNVVKTTVLLADINDFNTVNEIYKQYFKSNFPARAAYQVAALPKGSRIEIE 124

Query: 209 CIA 212
            +A
Sbjct: 125 AVA 127

[Close]

BLAST of MC10g1052 vs. ExPASy Swiss-Prot
Match: P52760 (2-iminobutanoate/2-iminopropanoate deaminase OS=Mus musculus OX=10090 GN=Rida PE=1 SV=3)

HSP 1 Score: 136.0 bits (341), Expect = 5.1e-31
Identity = 64/123 (52.03%), Postives = 90/123 (73.17%), Query Frame = 0


Query: 89  IKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEGQTEQVLKNMGE 148
           I++ + T KAPAA+GPYSQA++ +  +++SG +GL+P +G+ V   V  + +Q LKN+GE
Sbjct: 5   IRKVISTTKAPAAIGPYSQAVQVDRTIYISGQVGLDPSSGQLVPGGVVEEAKQALKNLGE 64

Query: 149 ILKAGGASYASVVKTTIMLADLKDFKKVNEIYAKYFLSPAPARSTFQVAALPLDAKVEIE 208
           ILKA G  + +VVKTT++LAD+ DF  VNEIY  YF    PAR+ +QVAALP  ++VEIE
Sbjct: 65  ILKAAGCDFNNVVKTTVLLADMNDFGTVNEIYKTYFQGSLPARAAYQVAALPRGSRVEIE 124

Query: 209 CIA 212
            IA
Sbjct: 125 AIA 127

[Close]

BLAST of MC10g1052 vs. ExPASy Swiss-Prot
Match: Q10121 (RutC family protein C23G10.2 OS=Caenorhabditis elegans OX=6239 GN=C23G10.2 PE=3 SV=3)

HSP 1 Score: 135.2 bits (339), Expect = 8.7e-31
Identity = 66/127 (51.97%), Postives = 90/127 (70.87%), Query Frame = 0


Query: 85  ADTCIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEGQTEQVLK 144
           A    ++ + +  AP A+GPYSQA++A N +++SG LGL+P+TG      VE QT Q LK
Sbjct: 36  AQKVTRQIISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVE-QTHQSLK 95

Query: 145 NMGEILKAGGASYASVVKTTIMLADLKDFKKVNEIYAKYFLSPAPARSTFQVAALPLDAK 204
           N+GE+LKA GA Y +VVKTT++L ++ DF  VNE+Y +YF SP PAR+ +QVAALP    
Sbjct: 96  NLGEVLKAAGADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGL 155

Query: 205 VEIECIA 212
           VEIE +A
Sbjct: 156 VEIEAVA 161

[Close]

BLAST of MC10g1052 vs. ExPASy Swiss-Prot
Match: P52759 (2-iminobutanoate/2-iminopropanoate deaminase OS=Rattus norvegicus OX=10116 GN=Rida PE=1 SV=3)

HSP 1 Score: 132.5 bits (332), Expect = 5.7e-30
Identity = 62/123 (50.41%), Postives = 88/123 (71.54%), Query Frame = 0


Query: 89  IKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEGQTEQVLKNMGE 148
           I++ + T KAPAA+G YSQA+  +  ++VSG +G++P +G+ V   V  + +Q LKN+GE
Sbjct: 5   IRKVISTSKAPAAIGAYSQAVLVDRTIYVSGQIGMDPSSGQLVPGGVAEEAKQALKNLGE 64

Query: 149 ILKAGGASYASVVKTTIMLADLKDFKKVNEIYAKYFLSPAPARSTFQVAALPLDAKVEIE 208
           ILKA G  + +VVKTT++LAD+ DF  VNEIY  YF    PAR+ +QVAALP  +++EIE
Sbjct: 65  ILKAAGCDFTNVVKTTVLLADINDFGTVNEIYKTYFQGNLPARAAYQVAALPKGSRIEIE 124

Query: 209 CIA 212
            IA
Sbjct: 125 AIA 127

[Close]

BLAST of MC10g1052 vs. NCBI nr
Match: XP_038903207.1 (reactive Intermediate Deaminase A, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 338 bits (866), Expect = 6.83e-116
Identity = 178/190 (93.68%), Postives = 181/190 (95.26%), Query Frame = 0


Query: 24  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSPASKRQMPFASLGI 83
           MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTS   KRQMPFASLGI
Sbjct: 1   MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTS---KRQMPFASLGI 60

Query: 84  SADTCIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEGQTEQVL 143
           S DT IKEAVQTDKAPAALGPYSQAIKANNLLFVSG LGLNPETGKFVSDDVE QTEQVL
Sbjct: 61  STDTSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGCLGLNPETGKFVSDDVEDQTEQVL 120

Query: 144 KNMGEILKAGGASYASVVKTTIMLADLKDFKKVNEIYAKYFLSPAPARSTFQVAALPLDA 203
           KNMGEILKAGGASY+SVVKTTIMLADLKDFKKVNEIY KYF SP+PARST+QVAALPLDA
Sbjct: 121 KNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPSPARSTYQVAALPLDA 180

Query: 204 KVEIECIATL 213
           KVEIECIATL
Sbjct: 181 KVEIECIATL 187

[Close]

BLAST of MC10g1052 vs. NCBI nr
Match: XP_004152932.1 (reactive Intermediate Deaminase A, chloroplastic [Cucumis sativus] >KGN56123.1 hypothetical protein Csa_009669 [Cucumis sativus])

HSP 1 Score: 330 bits (845), Expect = 1.08e-112
Identity = 173/190 (91.05%), Postives = 180/190 (94.74%), Query Frame = 0


Query: 24  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSPASKRQMPFASLGI 83
           MAWCAARTFHMPAFDVTALRSK+PLAVGVGC SVAGTTLWRSSSTS   KRQ+PFASLGI
Sbjct: 1   MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTS---KRQIPFASLGI 60

Query: 84  SADTCIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEGQTEQVL 143
           S  + IKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVE QTEQVL
Sbjct: 61  STSSSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVL 120

Query: 144 KNMGEILKAGGASYASVVKTTIMLADLKDFKKVNEIYAKYFLSPAPARSTFQVAALPLDA 203
           KNMGEILKAGG+SY+SVVKTTIMLADLKDFKKVNEIYAKYF SPAPARST++VA LPLDA
Sbjct: 121 KNMGEILKAGGSSYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDA 180

Query: 204 KVEIECIATL 213
           KVEIECIATL
Sbjct: 181 KVEIECIATL 187

[Close]

BLAST of MC10g1052 vs. NCBI nr
Match: XP_008463412.1 (PREDICTED: reactive Intermediate Deaminase A, chloroplastic-like [Cucumis melo])

HSP 1 Score: 329 bits (843), Expect = 2.18e-112
Identity = 173/190 (91.05%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 24  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSPASKRQMPFASLGI 83
           MAWCA R+FHMPAFDVTALRSKTPLAVGVGC SVAGTTLWRSSSTS   KRQ+PFASLGI
Sbjct: 1   MAWCATRSFHMPAFDVTALRSKTPLAVGVGCVSVAGTTLWRSSSTS---KRQIPFASLGI 60

Query: 84  SADTCIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEGQTEQVL 143
           S  + IKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSD+VE QTEQVL
Sbjct: 61  STSSSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDNVEDQTEQVL 120

Query: 144 KNMGEILKAGGASYASVVKTTIMLADLKDFKKVNEIYAKYFLSPAPARSTFQVAALPLDA 203
           KNMGEILKAGGASY+SVVKTTIMLADLKDFKKVNEIY KYF SPAPARST+QVAALPLDA
Sbjct: 121 KNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDA 180

Query: 204 KVEIECIATL 213
           KVEIECIATL
Sbjct: 181 KVEIECIATL 187

[Close]

BLAST of MC10g1052 vs. NCBI nr
Match: XP_022976324.1 (reactive Intermediate Deaminase A, chloroplastic [Cucurbita maxima])

HSP 1 Score: 327 bits (837), Expect = 1.79e-111
Identity = 172/190 (90.53%), Postives = 178/190 (93.68%), Query Frame = 0


Query: 24  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSPASKRQMPFASLGI 83
           MAWCAAR  HMPA D+TALRSKTPLAVGVGCASVAGTT  RSSSTS   KRQ+PFASLGI
Sbjct: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTFCRSSSTS---KRQIPFASLGI 60

Query: 84  SADTCIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEGQTEQVL 143
           S DT IKEAV+TDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDD+EGQTEQVL
Sbjct: 61  STDTSIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVL 120

Query: 144 KNMGEILKAGGASYASVVKTTIMLADLKDFKKVNEIYAKYFLSPAPARSTFQVAALPLDA 203
           KNMGEILKAGGASY+SVVKTTIMLADLKDFKKVNEIY KYF SPAPARST+QVAALPLDA
Sbjct: 121 KNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDA 180

Query: 204 KVEIECIATL 213
           KVEIECIATL
Sbjct: 181 KVEIECIATL 187

[Close]

BLAST of MC10g1052 vs. NCBI nr
Match: XP_022942433.1 (reactive Intermediate Deaminase A, chloroplastic [Cucurbita moschata] >XP_023545861.1 reactive Intermediate Deaminase A, chloroplastic [Cucurbita pepo subsp. pepo] >KAG6600781.1 Reactive Intermediate Deaminase A, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 322 bits (826), Expect = 8.49e-110
Identity = 170/190 (89.47%), Postives = 176/190 (92.63%), Query Frame = 0


Query: 24  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSPASKRQMPFASLGI 83
           MAWCAAR  HMPA D+TALRSKTPLAVGVGCASVAGTTL RSSSTS   KRQ+PFASL I
Sbjct: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTS---KRQIPFASLSI 60

Query: 84  SADTCIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEGQTEQVL 143
           S D  IKEAV+TDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDD+EGQTEQVL
Sbjct: 61  STDASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVL 120

Query: 144 KNMGEILKAGGASYASVVKTTIMLADLKDFKKVNEIYAKYFLSPAPARSTFQVAALPLDA 203
           KNMGEILKAGGA Y+SVVKTTIMLADLKDFKKVNEIY KYF SPAPARST+QVAALPLDA
Sbjct: 121 KNMGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDA 180

Query: 204 KVEIECIATL 213
           KVEIECIATL
Sbjct: 181 KVEIECIATL 187

[Close]

BLAST of MC10g1052 vs. ExPASy TrEMBL
Match: A0A0A0L2Z6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077580 PE=3 SV=1)

HSP 1 Score: 330 bits (845), Expect = 5.24e-113
Identity = 173/190 (91.05%), Postives = 180/190 (94.74%), Query Frame = 0


Query: 24  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSPASKRQMPFASLGI 83
           MAWCAARTFHMPAFDVTALRSK+PLAVGVGC SVAGTTLWRSSSTS   KRQ+PFASLGI
Sbjct: 1   MAWCAARTFHMPAFDVTALRSKSPLAVGVGCVSVAGTTLWRSSSTS---KRQIPFASLGI 60

Query: 84  SADTCIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEGQTEQVL 143
           S  + IKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVE QTEQVL
Sbjct: 61  STSSSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEDQTEQVL 120

Query: 144 KNMGEILKAGGASYASVVKTTIMLADLKDFKKVNEIYAKYFLSPAPARSTFQVAALPLDA 203
           KNMGEILKAGG+SY+SVVKTTIMLADLKDFKKVNEIYAKYF SPAPARST++VA LPLDA
Sbjct: 121 KNMGEILKAGGSSYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYEVARLPLDA 180

Query: 204 KVEIECIATL 213
           KVEIECIATL
Sbjct: 181 KVEIECIATL 187

[Close]

BLAST of MC10g1052 vs. ExPASy TrEMBL
Match: A0A1S3CJ54 (reactive Intermediate Deaminase A, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103501583 PE=3 SV=1)

HSP 1 Score: 329 bits (843), Expect = 1.06e-112
Identity = 173/190 (91.05%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 24  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSPASKRQMPFASLGI 83
           MAWCA R+FHMPAFDVTALRSKTPLAVGVGC SVAGTTLWRSSSTS   KRQ+PFASLGI
Sbjct: 1   MAWCATRSFHMPAFDVTALRSKTPLAVGVGCVSVAGTTLWRSSSTS---KRQIPFASLGI 60

Query: 84  SADTCIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEGQTEQVL 143
           S  + IKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSD+VE QTEQVL
Sbjct: 61  STSSSIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDNVEDQTEQVL 120

Query: 144 KNMGEILKAGGASYASVVKTTIMLADLKDFKKVNEIYAKYFLSPAPARSTFQVAALPLDA 203
           KNMGEILKAGGASY+SVVKTTIMLADLKDFKKVNEIY KYF SPAPARST+QVAALPLDA
Sbjct: 121 KNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDA 180

Query: 204 KVEIECIATL 213
           KVEIECIATL
Sbjct: 181 KVEIECIATL 187

[Close]

BLAST of MC10g1052 vs. ExPASy TrEMBL
Match: A0A6J1IN69 (reactive Intermediate Deaminase A, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111476753 PE=3 SV=1)

HSP 1 Score: 327 bits (837), Expect = 8.68e-112
Identity = 172/190 (90.53%), Postives = 178/190 (93.68%), Query Frame = 0


Query: 24  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSPASKRQMPFASLGI 83
           MAWCAAR  HMPA D+TALRSKTPLAVGVGCASVAGTT  RSSSTS   KRQ+PFASLGI
Sbjct: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTFCRSSSTS---KRQIPFASLGI 60

Query: 84  SADTCIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEGQTEQVL 143
           S DT IKEAV+TDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDD+EGQTEQVL
Sbjct: 61  STDTSIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVL 120

Query: 144 KNMGEILKAGGASYASVVKTTIMLADLKDFKKVNEIYAKYFLSPAPARSTFQVAALPLDA 203
           KNMGEILKAGGASY+SVVKTTIMLADLKDFKKVNEIY KYF SPAPARST+QVAALPLDA
Sbjct: 121 KNMGEILKAGGASYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDA 180

Query: 204 KVEIECIATL 213
           KVEIECIATL
Sbjct: 181 KVEIECIATL 187

[Close]

BLAST of MC10g1052 vs. ExPASy TrEMBL
Match: A0A6J1FUT7 (reactive Intermediate Deaminase A, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111447476 PE=3 SV=1)

HSP 1 Score: 322 bits (826), Expect = 4.11e-110
Identity = 170/190 (89.47%), Postives = 176/190 (92.63%), Query Frame = 0


Query: 24  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSPASKRQMPFASLGI 83
           MAWCAAR  HMPA D+TALRSKTPLAVGVGCASVAGTTL RSSSTS   KRQ+PFASL I
Sbjct: 1   MAWCAARALHMPALDITALRSKTPLAVGVGCASVAGTTLCRSSSTS---KRQIPFASLSI 60

Query: 84  SADTCIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEGQTEQVL 143
           S D  IKEAV+TDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDD+EGQTEQVL
Sbjct: 61  STDASIKEAVKTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDIEGQTEQVL 120

Query: 144 KNMGEILKAGGASYASVVKTTIMLADLKDFKKVNEIYAKYFLSPAPARSTFQVAALPLDA 203
           KNMGEILKAGGA Y+SVVKTTIMLADLKDFKKVNEIY KYF SPAPARST+QVAALPLDA
Sbjct: 121 KNMGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYGKYFPSPAPARSTYQVAALPLDA 180

Query: 204 KVEIECIATL 213
           KVEIECIATL
Sbjct: 181 KVEIECIATL 187

[Close]

BLAST of MC10g1052 vs. ExPASy TrEMBL
Match: A0A6P4APP4 (reactive Intermediate Deaminase A, chloroplastic OS=Ziziphus jujuba OX=326968 GN=LOC107431842 PE=3 SV=1)

HSP 1 Score: 297 bits (760), Expect = 4.64e-100
Identity = 157/190 (82.63%), Postives = 171/190 (90.00%), Query Frame = 0


Query: 24  MAWCAARTFHMPAFDVTALRSKTPLAVGVGCASVAGTTLWRSSSTSPASKRQMPFASLGI 83
           MAWCAARTF++PA DV ALR++ PLAVGVG ASVAG+ +WRSSS+    KR  PFA LGI
Sbjct: 1   MAWCAARTFNVPAIDVGALRTRAPLAVGVGFASVAGSNIWRSSSSM---KRSAPFACLGI 60

Query: 84  SADTCIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEGQTEQVL 143
           S DT IKEAV+TDKAPAALGPYSQAIKANN L+VSGVLGL PETGKFVSD+VE QTEQVL
Sbjct: 61  STDTRIKEAVKTDKAPAALGPYSQAIKANNFLYVSGVLGLIPETGKFVSDNVEDQTEQVL 120

Query: 144 KNMGEILKAGGASYASVVKTTIMLADLKDFKKVNEIYAKYFLSPAPARSTFQVAALPLDA 203
           KNMGEILKAGGA Y+SVVKTTIMLADLKDFKKVNEIYAKYF SPAPARST+QVAALPLDA
Sbjct: 121 KNMGEILKAGGAGYSSVVKTTIMLADLKDFKKVNEIYAKYFPSPAPARSTYQVAALPLDA 180

Query: 204 KVEIECIATL 213
           K+EIECIA+L
Sbjct: 181 KIEIECIASL 187

[Close]

BLAST of MC10g1052 vs. TAIR 10
Match: AT3G20390.1 (endoribonuclease L-PSP family protein )

HSP 1 Score: 249.2 bits (635), Expect = 2.9e-66
Identity = 138/193 (71.50%), Postives = 157/193 (81.35%), Query Frame = 0


Query: 24  MAWCAARTFHMPAFDV-TALRS-KTPL-AVGVGCASVAGTTLWRSSSTSPASKRQMPFAS 83
           M W   R+ + P  D+ TALRS +TPL A GVGCA+ AG +L+R SS SP      PFAS
Sbjct: 1   MTWSVFRSINTPTLDLSTALRSTRTPLVAAGVGCATFAGVSLFRMSSRSP------PFAS 60

Query: 84  LGISADTCIKEAVQTDKAPAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEGQTE 143
           L +SA +  KE V T+KAPAALGPYSQAIKANNL+F+SGVLGL PETGKFVS+ VE QTE
Sbjct: 61  LSVSASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTE 120

Query: 144 QVLKNMGEILKAGGASYASVVKTTIMLADLKDFKKVNEIYAKYFLSPAPARSTFQVAALP 203
           QVLKNMGEILKA GA Y+SVVKTTIMLADL DFK VNEIYAKYF +P+PARST+QVAALP
Sbjct: 121 QVLKNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALP 180

Query: 204 LDAKVEIECIATL 214
           L+AK+EIECIATL
Sbjct: 181 LNAKIEIECIATL 187

[Close]

BLAST of MC10g1052 vs. TAIR 10
Match: AT3G04480.1 (endoribonucleases )

HSP 1 Score: 41.6 bits (96), Expect = 9.3e-04
Identity = 26/100 (26.00%), Postives = 51/100 (51.00%), Query Frame = 0


Query: 98  APAALGPYSQAIKANNLLFVSGVLGLNPETGKFVSDDVEGQTEQVLKNMGEILKAGGASY 157
           AP+ +GPYSQA    ++L ++G LGL+P T    ++    +  Q L N   I ++   S 
Sbjct: 424 APSCIGPYSQATLHQSVLHMAGQLGLDPPTMNLQTEGAIAELNQALTNSEAIAESFNCSI 483

Query: 158 ASVVKTTIMLADLKDFK-KVNEIYAKYFLSPAPARSTFQV 197
           +S     ++    +  + + N+++ K+      A+S+ +V
Sbjct: 484 SSSAILFVVFCSARTKQSERNQLHEKFVTFLGLAKSSRRV 523

The following BLAST results are available for this feature:

BLAST of MC10g1052 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94JQ4	4.1e-65	71.50	Reactive Intermediate Deaminase A, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
P52758	1.3e-31	51.22	2-iminobutanoate/2-iminopropanoate deaminase OS=Homo sapiens OX=9606 GN=RIDA PE=...	[more]
P52760	5.1e-31	52.03	2-iminobutanoate/2-iminopropanoate deaminase OS=Mus musculus OX=10090 GN=Rida PE...	[more]
Q10121	8.7e-31	51.97	RutC family protein C23G10.2 OS=Caenorhabditis elegans OX=6239 GN=C23G10.2 PE=3 ...	[more]
P52759	5.7e-30	50.41	2-iminobutanoate/2-iminopropanoate deaminase OS=Rattus norvegicus OX=10116 GN=Ri...	[more]

BLAST of MC10g1052 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903207.1	6.83e-116	93.68	reactive Intermediate Deaminase A, chloroplastic-like [Benincasa hispida]	[more]
XP_004152932.1	1.08e-112	91.05	reactive Intermediate Deaminase A, chloroplastic [Cucumis sativus] >KGN56123.1 h...	[more]
XP_008463412.1	2.18e-112	91.05	PREDICTED: reactive Intermediate Deaminase A, chloroplastic-like [Cucumis melo]	[more]
XP_022976324.1	1.79e-111	90.53	reactive Intermediate Deaminase A, chloroplastic [Cucurbita maxima]	[more]
XP_022942433.1	8.49e-110	89.47	reactive Intermediate Deaminase A, chloroplastic [Cucurbita moschata] >XP_023545...	[more]

BLAST of MC10g1052 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2Z6	5.24e-113	91.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G077580 PE=3 SV=1	[more]
A0A1S3CJ54	1.06e-112	91.05	reactive Intermediate Deaminase A, chloroplastic-like OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1IN69	8.68e-112	90.53	reactive Intermediate Deaminase A, chloroplastic OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1FUT7	4.11e-110	89.47	reactive Intermediate Deaminase A, chloroplastic OS=Cucurbita moschata OX=3662 G...	[more]
A0A6P4APP4	4.64e-100	82.63	reactive Intermediate Deaminase A, chloroplastic OS=Ziziphus jujuba OX=326968 GN...	[more]

BLAST of MC10g1052 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20390.1	2.9e-66	71.50	endoribonuclease L-PSP family protein	[more]
AT3G04480.1	9.3e-04	26.00	endoribonucleases	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006175	YjgF/YER057c/UK114 family	PFAM	PF01042	Ribonuc_L-PSP	coord: 96..212 e-value: 2.3E-41 score: 140.6
IPR006175	YjgF/YER057c/UK114 family	PANTHER	PTHR11803	2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA	coord: 24..213
IPR035959	RutC-like superfamily	GENE3D	3.30.1330.40		coord: 85..212 e-value: 2.1E-48 score: 165.6
IPR035959	RutC-like superfamily	SUPERFAMILY	55298	YjgF-like	coord: 90..213
IPR006056	RidA family	TIGRFAM	TIGR00004	TIGR00004	coord: 90..212 e-value: 1.3E-50 score: 168.8
None	No IPR available	PANTHER	PTHR11803:SF45	PERCHLORIC ACID SOLUBLE TRANSLATION INHIBITOR-LIKE PROTEIN	coord: 24..213
None	No IPR available	CDD	cd00448	YjgF_YER057c_UK114_family	coord: 105..211 e-value: 5.46384E-44 score: 140.771
IPR019897	RidA, conserved site	PROSITE	PS01094	UPF0076	coord: 189..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC10g1052.1	MC10g1052.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901565	organonitrogen compound catabolic process
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0019239	deaminase activity