MC10g1050 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC10g1050
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Ribosomal protein S4
Location	MC10: 10499511 .. 10499774 (-)
RNA-Seq Expression	MC10g1050
Synteny	MC10g1050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTAACAGTAACATCCAATTACAAACTACACGAAATTTGTCCCTTTTTCATGGGGATTTACCGATCACAGAGATGCACAGAGGAACAGAACGAACTTCTTATAACCCTTTTCCACTCAATCTAGAAACAAGATCGGACGTTATTCCGGTTCGTCTCCATTTTAGTGAAACTATTCCTCAAGCAAGGCAGTCGATAAGTCATCTAAGGGTTTGTGTGAATAAGGGAATGGTAAGCATTACTCATTTTAAAGTGTCGTACGGTGAG

mRNA sequence

CTTAACAGTAACATCCAATTACAAACTACACGAAATTTGTCCCTTTTTCATGGGGATTTACCGATCACAGAGATGCACAGAGGAACAGAACGAACTTCTTATAACCCTTTTCCACTCAATCTAGAAACAAGATCGGACGTTATTCCGGTTCGTCTCCATTTTAGTGAAACTATTCCTCAAGCAAGGCAGTCGATAAGTCATCTAAGGGTTTGTGTGAATAAGGGAATGGTAAGCATTACTCATTTTAAAGTGTCGTACGGTGAG

Coding sequence (CDS)

CTTAACAGTAACATCCAATTACAAACTACACGAAATTTGTCCCTTTTTCATGGGGATTTACCGATCACAGAGATGCACAGAGGAACAGAACGAACTTCTTATAACCCTTTTCCACTCAATCTAGAAACAAGATCGGACGTTATTCCGGTTCGTCTCCATTTTAGTGAAACTATTCCTCAAGCAAGGCAGTCGATAAGTCATCTAAGGGTTTGTGTGAATAAGGGAATGGTAAGCATTACTCATTTTAAAGTGTCGTACGGTGAG

Protein sequence

LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQARQSISHLRVCVNKGMVSITHFKVSYGE

Homology

[Close]

BLAST of MC10g1050 vs. ExPASy Swiss-Prot
Match: Q31708 (Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS4 PE=1 SV=2)

HSP 1 Score: 142.5 bits (358), Expect = 2.3e-33
Identity = 70/88 (79.55%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 1   LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQ 60
           L S IQLQTTR L  F+GDLPITEMHRGT+RTSY PF LNLETR DVIP+RL+F ETIPQ
Sbjct: 63  LTSYIQLQTTRKLPFFYGDLPITEMHRGTKRTSYIPFLLNLETRFDVIPLRLYFLETIPQ 122

Query: 61  ARQSISHLRVCVNKGMVSITHFKVSYGE 89
           ARQ ISH RVCVNKGMVSITHFK+S+G+
Sbjct: 123 ARQLISHRRVCVNKGMVSITHFKLSHGD 150

[Close]

BLAST of MC10g1050 vs. ExPASy Swiss-Prot
Match: P26866 (Ribosomal protein S4, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS4 PE=3 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 6.8e-14
Identity = 44/88 (50.00%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 4   NIQLQTTRNLSLFHGDLPITEMHRGTERT---SYNPFPLNLETRSDVIPVRLHFSETIPQ 63
           +IQLQT + LSLF+G+LPI +M R    T     N    N+E R DVI VRL+F  T+ Q
Sbjct: 46  SIQLQTIKKLSLFYGNLPIKKMQRAKTHTYIDKKNSLLFNIEKRLDVILVRLNFCSTMFQ 105

Query: 64  ARQSISHLRVCVNKGMVSITHFKVSYGE 89
           ARQ ISH  +CVN   V+I  F+VS G+
Sbjct: 106 ARQLISHKNICVNYKKVNIPGFQVSNGD 133

[Close]

BLAST of MC10g1050 vs. NCBI nr
Match: YP_009913620.1 (ribosomal protein S4 [Luffa acutangula] >QLJ93050.1 ribosomal protein S4 [Luffa acutangula])

HSP 1 Score: 158 bits (399), Expect = 4.97e-45
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 1   LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQ 60
           LNS IQ QTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHFSETIPQ
Sbjct: 56  LNSYIQSQTTRKLPLFHGDLPITEMHRGTERTSYIPFPLNPETRSDVIPVRLHFSETIPQ 115

Query: 61  ARQSISHLRVCVNKGMVSITHFKVSYGE 88
           ARQ ISH RVCVNKGMVSITHFKVS+G+
Sbjct: 116 ARQPISHRRVCVNKGMVSITHFKVSHGD 143

[Close]

BLAST of MC10g1050 vs. NCBI nr
Match: AAW47278.1 (ribosomal protein S4, partial [Lonicera sp. Bergthorsson 0301])

HSP 1 Score: 154 bits (389), Expect = 6.50e-44
Identity = 76/88 (86.36%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1   LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQ 60
           LNS IQ QTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQ
Sbjct: 41  LNSYIQSQTTRKLPLFHGDLPITEMHRGTERTSYIPFPLNPETRSDVIPVRLHFRETIPQ 100

Query: 61  ARQSISHLRVCVNKGMVSITHFKVSYGE 88
           ARQ ISH RVCVN GMVSITHFKVS+G+
Sbjct: 101 ARQPISHRRVCVNNGMVSITHFKVSHGD 128

[Close]

BLAST of MC10g1050 vs. NCBI nr
Match: WP_131747055.1 (hypothetical protein [Candidatus Frankia meridionalis])

HSP 1 Score: 156 bits (394), Expect = 8.09e-44
Identity = 77/88 (87.50%), Postives = 79/88 (89.77%), Query Frame = 0


Query: 1   LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQ 60
           LNS IQ QTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQ
Sbjct: 106 LNSYIQSQTTRKLPLFHGDLPITEMHRGTERTSYIPFPLNPETRSDVIPVRLHFCETIPQ 165

Query: 61  ARQSISHLRVCVNKGMVSITHFKVSYGE 88
           ARQ ISH RVCVNKGMVSITHFKVS+G+
Sbjct: 166 ARQPISHRRVCVNKGMVSITHFKVSHGD 193

[Close]

BLAST of MC10g1050 vs. NCBI nr
Match: YP_009711332.1 (ribosomal protein S4 [Rhaphiolepis bibas] >QGI24977.1 ribosomal protein S4 [Rhaphiolepis bibas])

HSP 1 Score: 153 bits (387), Expect = 1.27e-43
Identity = 76/88 (86.36%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1   LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQ 60
           LNS IQ QTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQ
Sbjct: 18  LNSYIQSQTTRKLPLFHGDLPITEMHRGTERTSYIPFPLNPETRSDVIPVRLHFCETIPQ 77

Query: 61  ARQSISHLRVCVNKGMVSITHFKVSYGE 88
           ARQ ISH RVCVN GMVSITHFKVS+G+
Sbjct: 78  ARQPISHGRVCVNNGMVSITHFKVSHGD 105

[Close]

BLAST of MC10g1050 vs. NCBI nr
Match: ALE29211.1 (ribosomal protein S4, partial [Heuchera parviflora var. saurensis])

HSP 1 Score: 154 bits (389), Expect = 1.97e-43
Identity = 76/88 (86.36%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1   LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQ 60
           LNS IQ QTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQ
Sbjct: 53  LNSYIQSQTTRKLPLFHGDLPITEMHRGTERTSYIPFPLNPETRSDVIPVRLHFRETIPQ 112

Query: 61  ARQSISHLRVCVNKGMVSITHFKVSYGE 88
           ARQ ISH RVCVN GMVSITHFKVS+G+
Sbjct: 113 ARQPISHRRVCVNNGMVSITHFKVSHGD 140

[Close]

BLAST of MC10g1050 vs. ExPASy TrEMBL
Match: A0A7D6BZG8 (Ribosomal protein S4 OS=Luffa acutangula OX=56866 GN=rps4 PE=3 SV=1)

HSP 1 Score: 158 bits (399), Expect = 2.40e-45
Identity = 78/88 (88.64%), Postives = 80/88 (90.91%), Query Frame = 0


Query: 1   LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQ 60
           LNS IQ QTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHFSETIPQ
Sbjct: 56  LNSYIQSQTTRKLPLFHGDLPITEMHRGTERTSYIPFPLNPETRSDVIPVRLHFSETIPQ 115

Query: 61  ARQSISHLRVCVNKGMVSITHFKVSYGE 88
           ARQ ISH RVCVNKGMVSITHFKVS+G+
Sbjct: 116 ARQPISHRRVCVNKGMVSITHFKVSHGD 143

[Close]

BLAST of MC10g1050 vs. ExPASy TrEMBL
Match: Q5IA04 (Ribosomal protein S4 (Fragment) OS=Lonicera sp. Bergthorsson 0301 OX=232617 GN=rps4 PE=3 SV=1)

HSP 1 Score: 154 bits (389), Expect = 3.15e-44
Identity = 76/88 (86.36%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1   LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQ 60
           LNS IQ QTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQ
Sbjct: 41  LNSYIQSQTTRKLPLFHGDLPITEMHRGTERTSYIPFPLNPETRSDVIPVRLHFRETIPQ 100

Query: 61  ARQSISHLRVCVNKGMVSITHFKVSYGE 88
           ARQ ISH RVCVN GMVSITHFKVS+G+
Sbjct: 101 ARQPISHRRVCVNNGMVSITHFKVSHGD 128

[Close]

BLAST of MC10g1050 vs. ExPASy TrEMBL
Match: A0A5Q3A4G2 (Ribosomal protein S4 OS=Eriobotrya japonica OX=32224 GN=rps4 PE=3 SV=1)

HSP 1 Score: 153 bits (387), Expect = 6.13e-44
Identity = 76/88 (86.36%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1   LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQ 60
           LNS IQ QTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQ
Sbjct: 18  LNSYIQSQTTRKLPLFHGDLPITEMHRGTERTSYIPFPLNPETRSDVIPVRLHFCETIPQ 77

Query: 61  ARQSISHLRVCVNKGMVSITHFKVSYGE 88
           ARQ ISH RVCVN GMVSITHFKVS+G+
Sbjct: 78  ARQPISHGRVCVNNGMVSITHFKVSHGD 105

[Close]

BLAST of MC10g1050 vs. ExPASy TrEMBL
Match: A0A0M4MT62 (Ribosomal protein S4 (Fragment) OS=Heuchera parviflora var. saurensis OX=1708480 GN=rps4 PE=3 SV=1)

HSP 1 Score: 154 bits (389), Expect = 9.54e-44
Identity = 76/88 (86.36%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1   LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQ 60
           LNS IQ QTTR L LFHGDLPITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQ
Sbjct: 53  LNSYIQSQTTRKLPLFHGDLPITEMHRGTERTSYIPFPLNPETRSDVIPVRLHFRETIPQ 112

Query: 61  ARQSISHLRVCVNKGMVSITHFKVSYGE 88
           ARQ ISH RVCVN GMVSITHFKVS+G+
Sbjct: 113 ARQPISHRRVCVNNGMVSITHFKVSHGD 140

[Close]

BLAST of MC10g1050 vs. ExPASy TrEMBL
Match: A0A7L9QAE9 (Ribosomal protein S4 OS=Malania oleifera OX=397392 GN=rps4 PE=3 SV=1)

HSP 1 Score: 153 bits (387), Expect = 1.21e-43
Identity = 76/88 (86.36%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1   LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQ 60
           LNS IQLQTTR L LFHGDL ITEMHRGTERTSY PFPLN ETRSDVIPVRLHF ETIPQ
Sbjct: 49  LNSYIQLQTTRKLPLFHGDLSITEMHRGTERTSYIPFPLNPETRSDVIPVRLHFRETIPQ 108

Query: 61  ARQSISHLRVCVNKGMVSITHFKVSYGE 88
           ARQ ISH RVCVN GMVSITHFKVS+G+
Sbjct: 109 ARQPISHRRVCVNNGMVSITHFKVSHGD 136

[Close]

BLAST of MC10g1050 vs. TAIR 10
Match: AT2G07734.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein )

HSP 1 Score: 150.2 bits (378), Expect = 7.7e-37
Identity = 73/88 (82.95%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1   LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQ 60
           L S IQLQTTR L LFHGDLPITEMHRGT+RTSY PFPLN ETR DVIP+RLHF ETIPQ
Sbjct: 63  LTSYIQLQTTRKLPLFHGDLPITEMHRGTKRTSYIPFPLNPETRFDVIPLRLHFLETIPQ 122

Query: 61  ARQSISHLRVCVNKGMVSITHFKVSYGE 89
           ARQ ISH RVCVNKGMVSITHFK+S+G+
Sbjct: 123 ARQPISHRRVCVNKGMVSITHFKLSHGD 150

[Close]

BLAST of MC10g1050 vs. TAIR 10
Match: ATMG00290.1 (mitochondrial ribosomal protein S4 )

HSP 1 Score: 150.2 bits (378), Expect = 7.7e-37
Identity = 73/88 (82.95%), Postives = 78/88 (88.64%), Query Frame = 0


Query: 1   LNSNIQLQTTRNLSLFHGDLPITEMHRGTERTSYNPFPLNLETRSDVIPVRLHFSETIPQ 60
           L S IQLQTTR L LFHGDLPITEMHRGT+RTSY PFPLN ETR DVIP+RLHF ETIPQ
Sbjct: 63  LTSYIQLQTTRKLPLFHGDLPITEMHRGTKRTSYIPFPLNPETRFDVIPLRLHFLETIPQ 122

Query: 61  ARQSISHLRVCVNKGMVSITHFKVSYGE 89
           ARQ ISH RVCVNKGMVSITHFK+S+G+
Sbjct: 123 ARQPISHRRVCVNKGMVSITHFKLSHGD 150

The following BLAST results are available for this feature:

BLAST of MC10g1050 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q31708	2.3e-33	79.55	Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS4 PE=1...	[more]
P26866	6.8e-14	50.00	Ribosomal protein S4, mitochondrial OS=Marchantia polymorpha OX=3197 GN=RPS4 PE=...	[more]

BLAST of MC10g1050 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009913620.1	4.97e-45	88.64	ribosomal protein S4 [Luffa acutangula] >QLJ93050.1 ribosomal protein S4 [Luffa ...	[more]
AAW47278.1	6.50e-44	86.36	ribosomal protein S4, partial [Lonicera sp. Bergthorsson 0301]	[more]
WP_131747055.1	8.09e-44	87.50	hypothetical protein [Candidatus Frankia meridionalis]	[more]
YP_009711332.1	1.27e-43	86.36	ribosomal protein S4 [Rhaphiolepis bibas] >QGI24977.1 ribosomal protein S4 [Rhap...	[more]
ALE29211.1	1.97e-43	86.36	ribosomal protein S4, partial [Heuchera parviflora var. saurensis]	[more]

BLAST of MC10g1050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7D6BZG8	2.40e-45	88.64	Ribosomal protein S4 OS=Luffa acutangula OX=56866 GN=rps4 PE=3 SV=1	[more]
Q5IA04	3.15e-44	86.36	Ribosomal protein S4 (Fragment) OS=Lonicera sp. Bergthorsson 0301 OX=232617 GN=r...	[more]
A0A5Q3A4G2	6.13e-44	86.36	Ribosomal protein S4 OS=Eriobotrya japonica OX=32224 GN=rps4 PE=3 SV=1	[more]
A0A0M4MT62	9.54e-44	86.36	Ribosomal protein S4 (Fragment) OS=Heuchera parviflora var. saurensis OX=1708480...	[more]
A0A7L9QAE9	1.21e-43	86.36	Ribosomal protein S4 OS=Malania oleifera OX=397392 GN=rps4 PE=3 SV=1	[more]

BLAST of MC10g1050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G07734.1	7.7e-37	82.95	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein	[more]
ATMG00290.1	7.7e-37	82.95	mitochondrial ribosomal protein S4	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 46..85 e-value: 2.0E-6 score: 27.4
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 44..88 e-value: 1.45332E-7 score: 42.6218
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 42..88 e-value: 3.3E-9 score: 39.0
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 1..87
None	No IPR available	PANTHER	PTHR11831:SF30	RIBOSOMAL PROTEIN S4-RELATED	coord: 1..87
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 5..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC10g1050.1	MC10g1050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding