MC10g1034 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC10g1034
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionprotein LHCP TRANSLOCATION DEFECT
LocationMC10: 10054560 .. 10056792 (-)
RNA-Seq ExpressionMC10g1034
SyntenyMC10g1034
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3
Hold the cursor over a type above to highlight its positions in the sequence below.
TACCAAGCTTATTTTTTTGGGCCCCCAAAATCTATCCATCCATCATCAGAGAGATGGCCTTTTTCTCTCTCAAACTCCATCCAACGTCCAAGATCTTCTCTGCAATACGGAGTGGATAAAACCTGCAACTGCAACTTCCAAAACTTGCTCAAAACTCTGCCATGGCTTCCGTCTCCTGCACTGCCTCCATAAATTTCACCCCAACATGCTTCACTTCCCGTTCTTCCTCGAAAATGGGTTCCCGATTTCTTGGGTTTCATTCTAAGCTCGGTTGGACCGCGCCCATCGCCATTGGACCCTCCAATGGGTCTAGAGCTACGTGCTGGTTCAATTTTCGCCAAAATGCCGAAGGTGCCGGCATTTATGGCAGCCAGTCCCGAGATGACTTCAACAGAGACGATGTCGAGCAGGTTCTTTTTCTTTTACTGTCTTCTTTCTTCGGTTTTGTGTGATTATGGATTTCTGTTTCCTGTGATTATTGAAGCAATTTTTTTATTTAGTTTCATTGCTGATTTGAGGCTGATTCTGATGATCTGGAAGTTGAAAATGTGCCTTGTCGTTCTCTGTTTTTCTGCTGAGCTTGCAATTTCATATTATTTTTCTTTCTTATTGCTGAGCAAGAGGGTTTTATTTCTTTATAGTTTTATGATAATGTATGTAGGAAGATTTTGGGTTTTAGTGTGTTAGTCACCAATCTGAAAAGCTTGGAGCATGTTGAACAAAGCTATTGATTTTGGTTCTTTGTTTTTCAAATTTATACTTATTCACTAATCTTGTTTGCCAATTTTTTCAAACTAAAAAACAGTTTTCAAAGATGCATTTCTTAACCAAAGTTTCAGAAGTGTTCTTAACAATAAAAAACTGAATAAAGAAAATATAAGTGTAAATAGTTTTGCTCATCTTAACAGGCCCTTTGAGATTTGGATATTGATCACAAGGATACTGTGAAATTAGAAGGAAATCTGTGGAGTTGTTGTAGTTTGAATGTTATTGCCATTGGAGGGATTAGATATGACAAGAAAATTCCAATTTGGCATAACTCAAGAATTTTTTAACCACTCCTTAGTGAATGAAGCCAGCGGAAGGGATTTGAAGTGATGGCAGAGTGTCTACTTTGGTTAAAATTAGAATGCCCTTTGTGGTACTGATATTAGAATATTGTGAGGGAGGGGACCTCAAACTTGTGCAGCCAAATGCTTGTGTGAAAAGTGCTTAGAACTTTCTACTTTCCCTCAAACAAATTTCTTGATTTGCTGTATGTAAGGTAAGAAACTAAAGTATTTCTTCATCCCCGTGTCTCCTTTTGCTTTGGAAATGTGTTGAGTCATAACCTTAGTATGTAATGAGACGAGAACAATACACAATATGAAAGAAAACCCTTAAAAACAGTGGCTTGATTTGACTCGAATTGCACTGGTCAGGACTTGAGACGACTCAAATTATATCATCAAAAGCTGATACGTAGGAGAATCTATTTTGATCTTCTTATTCAATTGTTCATGGTTGGTAAATTTAACTAATGTCTGCTAACTTGCATGCTGTTAAGTCAGCAACTTTTTGTCCATCTGCATACTCTTATAAAAATTGTGTTTACTTTTCAAAATTATTTTAATGTCTGCTATAGATCTGATCTGATTTGAGCCAAACCATTGTATTGTATGTGTCTCAATACTCTCCAAATCAATAGCTGATACCGTGACTTTGAGTCATGATCTCGACATCATCCTTAAATGAAGTTTCGGTTTTTCTAGAAGAAAAGAAAGAAAGAGGATTAACAAGTAAACATTTGGTTGTGCAGTATTTTAACTACATGGGAATGCTGGCTGTGGAGGGTACATATGACAAAATGGAGGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCATCAGAAGGGGACAAACCAAAGCTTGAAGAACTATTGAGAGCTGGAGCTACTTATGATGTGAAAGATGTGGATGGACGAACTGCCATTGATAGGGCACCCAGTGAAGAAATCAAAGATTTTATTCTTAATTTTGCTGTTAAGAAAGCATAATTTGGTCTCTCCTTGTTCTTCTTTGGTTTGTTTTTGGGGAGTGGCTATATTTTGATAGGTTTAGAAAGAGGTTTTAAAGATTTGTATTCCACTAATGTTAAATCATATTGTATTTAAATGACACACCTATTTTAATCCATTAGGAAATGGCTTCTAAATTTAAAGTCTTATTTATAA

mRNA sequence

TACCAAGCTTATTTTTTTGGGCCCCCAAAATCTATCCATCCATCATCAGAGAGATGGCCTTTTTCTCTCTCAAACTCCATCCAACGTCCAAGATCTTCTCTGCAATACGGAGTGGATAAAACCTGCAACTGCAACTTCCAAAACTTGCTCAAAACTCTGCCATGGCTTCCGTCTCCTGCACTGCCTCCATAAATTTCACCCCAACATGCTTCACTTCCCGTTCTTCCTCGAAAATGGGTTCCCGATTTCTTGGGTTTCATTCTAAGCTCGGTTGGACCGCGCCCATCGCCATTGGACCCTCCAATGGGTCTAGAGCTACGTGCTGGTTCAATTTTCGCCAAAATGCCGAAGGTGCCGGCATTTATGGCAGCCAGTCCCGAGATGACTTCAACAGAGACGATGTCGAGCAGTATTTTAACTACATGGGAATGCTGGCTGTGGAGGGTACATATGACAAAATGGAGGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCATCAGAAGGGGACAAACCAAAGCTTGAAGAACTATTGAGAGCTGGAGCTACTTATGATGTGAAAGATGTGGATGGACGAACTGCCATTGATAGGGCACCCAGTGAAGAAATCAAAGATTTTATTCTTAATTTTGCTGTTAAGAAAGCATAATTTGGTCTCTCCTTGTTCTTCTTTGGTTTGTTTTTGGGGAGTGGCTATATTTTGATAGGTTTAGAAAGAGGTTTTAAAGATTTGTATTCCACTAATGTTAAATCATATTGTATTTAAATGACACACCTATTTTAATCCATTAGGAAATGGCTTCTAAATTTAAAGTCTTATTTATAA

Coding sequence (CDS)

ATGGCTTCCGTCTCCTGCACTGCCTCCATAAATTTCACCCCAACATGCTTCACTTCCCGTTCTTCCTCGAAAATGGGTTCCCGATTTCTTGGGTTTCATTCTAAGCTCGGTTGGACCGCGCCCATCGCCATTGGACCCTCCAATGGGTCTAGAGCTACGTGCTGGTTCAATTTTCGCCAAAATGCCGAAGGTGCCGGCATTTATGGCAGCCAGTCCCGAGATGACTTCAACAGAGACGATGTCGAGCAGTATTTTAACTACATGGGAATGCTGGCTGTGGAGGGTACATATGACAAAATGGAGGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGCTGATGCTGGCTGCATCAGAAGGGGACAAACCAAAGCTTGAAGAACTATTGAGAGCTGGAGCTACTTATGATGTGAAAGATGTGGATGGACGAACTGCCATTGATAGGGCACCCAGTGAAGAAATCAAAGATTTTATTCTTAATTTTGCTGTTAAGAAAGCATAA

Protein sequence

MASVSCTASINFTPTCFTSRSSSKMGSRFLGFHSKLGWTAPIAIGPSNGSRATCWFNFRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGATYDVKDVDGRTAIDRAPSEEIKDFILNFAVKKA
Homology
BLAST of MC10g1034 vs. ExPASy Swiss-Prot
Match: Q8VY88 (Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana OX=3702 GN=LTD PE=1 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 2.0e-54
Identity = 112/169 (66.27%), Postives = 129/169 (76.33%), Query Frame = 0

Query: 3   SVSCTASINFTPTCFTSRSSSKMGSRFLGFHSKLGWTAPIAIGPSNGSRATCWFNFRQN- 62
           S SC  S+  +    TS S   + SRFLG  +      P  +GPSNGSR TCWF F +N 
Sbjct: 7   SFSCAPSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNG 66

Query: 63  --AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 122
             AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLAA
Sbjct: 67  VDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAA 126

Query: 123 SEGDKPKLEELLRAGATYDVKDVDGRTAIDRAPSEEIKDFILNFAVKKA 169
           +EGD+PK+EELL+AGA Y VKD DGRTAIDRA SEEI+D IL ++ +KA
Sbjct: 127 TEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175

BLAST of MC10g1034 vs. ExPASy Swiss-Prot
Match: A2YLX7 (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica OX=39946 GN=LTD PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.3e-49
Identity = 108/175 (61.71%), Postives = 134/175 (76.57%), Query Frame = 0

Query: 1   MASVSCTASINFTPTCFTSRSSSKMGSRFLGFHSKLGWTAP---IAIGPSNGS---RATC 60
           MAS+ CT  ++   +  ++ ++++   R     ++LGW  P    A+ P++ S     TC
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPRAA---ARLGWLRPSRLSAVVPASESGRVGPTC 60

Query: 61  WFNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDI 120
           +F F  ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDI
Sbjct: 61  FFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDI 120

Query: 121 LLMLAASEGDKPKLEELLRAGATYDVKDVDGRTAIDRAPSEEIKDFILNFAVKKA 169
           LLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA +++ ++FIL FA   A
Sbjct: 121 LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRA-ADDTREFILGFAATLA 171

BLAST of MC10g1034 vs. ExPASy Swiss-Prot
Match: A3BKF2 (Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica OX=39947 GN=LTD PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.3e-49
Identity = 108/175 (61.71%), Postives = 134/175 (76.57%), Query Frame = 0

Query: 1   MASVSCTASINFTPTCFTSRSSSKMGSRFLGFHSKLGWTAP---IAIGPSNGS---RATC 60
           MAS+ CT  ++   +  ++ ++++   R     ++LGW  P    A+ P++ S     TC
Sbjct: 1   MASIPCTFQLSARASSASAAAAARRSPRAA---ARLGWLRPSRLSAVVPASESGRVGPTC 60

Query: 61  WFNF-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDI 120
           +F F  ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAVEGTYDKMEALL+QDIHPVDI
Sbjct: 61  FFKFGNKDAEGAGIYGSQGRDDFDRDDVEQYFNYMGMLAVEGTYDKMEALLNQDIHPVDI 120

Query: 121 LLMLAASEGDKPKLEELLRAGATYDVKDVDGRTAIDRAPSEEIKDFILNFAVKKA 169
           LLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA +++ ++FIL FA   A
Sbjct: 121 LLMLAASEGDKPKLEELLRAGAKYDVKDVDGRTALDRA-ADDTREFILGFAATLA 171

BLAST of MC10g1034 vs. NCBI nr
Match: XP_022150983.1 (protein LHCP TRANSLOCATION DEFECT [Momordica charantia])

HSP 1 Score: 335 bits (858), Expect = 9.47e-116
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0

Query: 1   MASVSCTASINFTPTCFTSRSSSKMGSRFLGFHSKLGWTAPIAIGPSNGSRATCWFNFRQ 60
           MASVSCTASINFTPTCFTSRSSSKMGSRFLGFHSKLGWTAPIAIGPSNGSRATCWFNFRQ
Sbjct: 1   MASVSCTASINFTPTCFTSRSSSKMGSRFLGFHSKLGWTAPIAIGPSNGSRATCWFNFRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGATYDVKDVDGRTAIDRAPSEEIKDFILNFAVKKA 168
           EGDKPKLEELLRAGATYDVKDVDGRTAIDRAPSEEIKDFILNFAVKKA
Sbjct: 121 EGDKPKLEELLRAGATYDVKDVDGRTAIDRAPSEEIKDFILNFAVKKA 168

BLAST of MC10g1034 vs. NCBI nr
Match: XP_004152919.1 (protein LHCP TRANSLOCATION DEFECT [Cucumis sativus] >KGN56143.1 hypothetical protein Csa_010871 [Cucumis sativus])

HSP 1 Score: 286 bits (731), Expect = 2.19e-96
Identity = 142/168 (84.52%), Postives = 152/168 (90.48%), Query Frame = 0

Query: 1   MASVSCTASINFTPTCFTSRSSSKMGSRFLGFHSKLGWTAPIAIGPSNGSRATCWFNFRQ 60
           MAS+SCT+SIN TP  F SR   K+GS FLG  S L W +P++IGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGATYDVKDVDGRTAIDRAPSEEIKDFILNFAVKKA 168
           EGDKPKLEELLRAGA+YDVKDVDGRTA+DRA +EEIKDFILNF+ KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168

BLAST of MC10g1034 vs. NCBI nr
Match: XP_038903413.1 (protein LHCP TRANSLOCATION DEFECT [Benincasa hispida])

HSP 1 Score: 284 bits (726), Expect = 1.26e-95
Identity = 142/168 (84.52%), Postives = 150/168 (89.29%), Query Frame = 0

Query: 1   MASVSCTASINFTPTCFTSRSSSKMGSRFLGFHSKLGWTAPIAIGPSNGSRATCWFNFRQ 60
           MAS+SCT S+N TP  F SR   K+ S+FLG  S L W +P+AIGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTNSMNLTPRSFNSRPPFKLSSQFLGLQSNLRWVSPVAIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGATYDVKDVDGRTAIDRAPSEEIKDFILNFAVKKA 168
           EGDKPKLEELLRAGA YDVKDVDGRTAIDRAP+EEIKDFILN +VK A
Sbjct: 121 EGDKPKLEELLRAGANYDVKDVDGRTAIDRAPNEEIKDFILNLSVKNA 168

BLAST of MC10g1034 vs. NCBI nr
Match: XP_008463435.1 (PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo] >KAA0033947.1 protein LHCP TRANSLOCATION DEFECT [Cucumis melo var. makuwa] >TYK02597.1 protein LHCP TRANSLOCATION DEFECT [Cucumis melo var. makuwa])

HSP 1 Score: 280 bits (717), Expect = 2.97e-94
Identity = 141/168 (83.93%), Postives = 149/168 (88.69%), Query Frame = 0

Query: 1   MASVSCTASINFTPTCFTSRSSSKMGSRFLGFHSKLGWTAPIAIGPSNGSRATCWFNFRQ 60
           MAS+SCT SIN TP  F SR   K+ S FLG  S L W +P++IGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGATYDVKDVDGRTAIDRAPSEEIKDFILNFAVKKA 168
           EGDKPKLEELLRAGA+YDVKDVDGRTAIDRA +EEIKDFIL F+ KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

BLAST of MC10g1034 vs. NCBI nr
Match: XP_022985270.1 (protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima])

HSP 1 Score: 280 bits (717), Expect = 3.08e-94
Identity = 143/168 (85.12%), Postives = 152/168 (90.48%), Query Frame = 0

Query: 1   MASVSCTA-SINFTPTCFTSRSSSKMGSRFLGFHSKLGWTAPIAIGPSNGSRATCWFNFR 60
           MASVSCT+ SIN +P  F SR   K+GS+FLG  S L W +PIAIGPSNGSRATCWFN R
Sbjct: 1   MASVSCTSTSINLSPASFNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGATYDVKDVDGRTAIDRAPSEEIKDFILNFAVKK 167
           SEGDKPKLEELLRAGA YDVKDVDGRTAIDRAP++EIKDFILNF+V+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

BLAST of MC10g1034 vs. ExPASy TrEMBL
Match: A0A6J1DAX7 (protein LHCP TRANSLOCATION DEFECT OS=Momordica charantia OX=3673 GN=LOC111019010 PE=4 SV=1)

HSP 1 Score: 335 bits (858), Expect = 4.58e-116
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0

Query: 1   MASVSCTASINFTPTCFTSRSSSKMGSRFLGFHSKLGWTAPIAIGPSNGSRATCWFNFRQ 60
           MASVSCTASINFTPTCFTSRSSSKMGSRFLGFHSKLGWTAPIAIGPSNGSRATCWFNFRQ
Sbjct: 1   MASVSCTASINFTPTCFTSRSSSKMGSRFLGFHSKLGWTAPIAIGPSNGSRATCWFNFRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGATYDVKDVDGRTAIDRAPSEEIKDFILNFAVKKA 168
           EGDKPKLEELLRAGATYDVKDVDGRTAIDRAPSEEIKDFILNFAVKKA
Sbjct: 121 EGDKPKLEELLRAGATYDVKDVDGRTAIDRAPSEEIKDFILNFAVKKA 168

BLAST of MC10g1034 vs. ExPASy TrEMBL
Match: A0A0A0L309 (ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078250 PE=4 SV=1)

HSP 1 Score: 286 bits (731), Expect = 1.06e-96
Identity = 142/168 (84.52%), Postives = 152/168 (90.48%), Query Frame = 0

Query: 1   MASVSCTASINFTPTCFTSRSSSKMGSRFLGFHSKLGWTAPIAIGPSNGSRATCWFNFRQ 60
           MAS+SCT+SIN TP  F SR   K+GS FLG  S L W +P++IGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGATYDVKDVDGRTAIDRAPSEEIKDFILNFAVKKA 168
           EGDKPKLEELLRAGA+YDVKDVDGRTA+DRA +EEIKDFILNF+ KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAVDRAVNEEIKDFILNFSAKKA 168

BLAST of MC10g1034 vs. ExPASy TrEMBL
Match: A0A5D3BT07 (Protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00530 PE=4 SV=1)

HSP 1 Score: 280 bits (717), Expect = 1.44e-94
Identity = 141/168 (83.93%), Postives = 149/168 (88.69%), Query Frame = 0

Query: 1   MASVSCTASINFTPTCFTSRSSSKMGSRFLGFHSKLGWTAPIAIGPSNGSRATCWFNFRQ 60
           MAS+SCT SIN TP  F SR   K+ S FLG  S L W +P++IGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGATYDVKDVDGRTAIDRAPSEEIKDFILNFAVKKA 168
           EGDKPKLEELLRAGA+YDVKDVDGRTAIDRA +EEIKDFIL F+ KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

BLAST of MC10g1034 vs. ExPASy TrEMBL
Match: A0A1S3CJ75 (protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo OX=3656 GN=LOC103501599 PE=4 SV=1)

HSP 1 Score: 280 bits (717), Expect = 1.44e-94
Identity = 141/168 (83.93%), Postives = 149/168 (88.69%), Query Frame = 0

Query: 1   MASVSCTASINFTPTCFTSRSSSKMGSRFLGFHSKLGWTAPIAIGPSNGSRATCWFNFRQ 60
           MAS+SCT SIN TP  F SR   K+ S FLG  S L W +P++IGPSNGSRATCWFN RQ
Sbjct: 1   MASLSCTTSINLTPRSFNSRPPFKLASHFLGLQSNLRWLSPLSIGPSNGSRATCWFNLRQ 60

Query: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120
           NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS
Sbjct: 61  NAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAAS 120

Query: 121 EGDKPKLEELLRAGATYDVKDVDGRTAIDRAPSEEIKDFILNFAVKKA 168
           EGDKPKLEELLRAGA+YDVKDVDGRTAIDRA +EEIKDFIL F+ KKA
Sbjct: 121 EGDKPKLEELLRAGASYDVKDVDGRTAIDRALNEEIKDFILKFSAKKA 168

BLAST of MC10g1034 vs. ExPASy TrEMBL
Match: A0A6J1JAV9 (protein LHCP TRANSLOCATION DEFECT OS=Cucurbita maxima OX=3661 GN=LOC111483311 PE=4 SV=1)

HSP 1 Score: 280 bits (717), Expect = 1.49e-94
Identity = 143/168 (85.12%), Postives = 152/168 (90.48%), Query Frame = 0

Query: 1   MASVSCTA-SINFTPTCFTSRSSSKMGSRFLGFHSKLGWTAPIAIGPSNGSRATCWFNFR 60
           MASVSCT+ SIN +P  F SR   K+GS+FLG  S L W +PIAIGPSNGSRATCWFN R
Sbjct: 1   MASVSCTSTSINLSPASFNSRPPLKLGSQFLGLQSNLRWVSPIAIGPSNGSRATCWFNLR 60

Query: 61  QNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120
           QNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA
Sbjct: 61  QNAEGAGIYGSQSRDDFIRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 120

Query: 121 SEGDKPKLEELLRAGATYDVKDVDGRTAIDRAPSEEIKDFILNFAVKK 167
           SEGDKPKLEELLRAGA YDVKDVDGRTAIDRAP++EIKDFILNF+V+K
Sbjct: 121 SEGDKPKLEELLRAGAKYDVKDVDGRTAIDRAPNQEIKDFILNFSVEK 168

BLAST of MC10g1034 vs. TAIR 10
Match: AT1G50900.1 (Ankyrin repeat family protein )

HSP 1 Score: 213.4 bits (542), Expect = 1.4e-55
Identity = 112/169 (66.27%), Postives = 129/169 (76.33%), Query Frame = 0

Query: 3   SVSCTASINFTPTCFTSRSSSKMGSRFLGFHSKLGWTAPIAIGPSNGSRATCWFNFRQN- 62
           S SC  S+  +    TS S   + SRFLG  +      P  +GPSNGSR TCWF F +N 
Sbjct: 7   SFSCAPSLATSLFSTTSSSPRLLSSRFLGTRNLKLRIRPARLGPSNGSRTTCWFKFGKNG 66

Query: 63  --AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHPVDILLMLAA 122
             AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY KMEALL+ +IHPVDILLMLAA
Sbjct: 67  VDAENAGIYGSQSRDDFDRDDVEQYFNYMGMLAVEGTYSKMEALLNLNIHPVDILLMLAA 126

Query: 123 SEGDKPKLEELLRAGATYDVKDVDGRTAIDRAPSEEIKDFILNFAVKKA 169
           +EGD+PK+EELL+AGA Y VKD DGRTAIDRA SEEI+D IL ++ +KA
Sbjct: 127 TEGDRPKIEELLKAGADYSVKDADGRTAIDRANSEEIRDLILGYSTQKA 175

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8VY882.0e-5466.27Protein LHCP TRANSLOCATION DEFECT OS=Arabidopsis thaliana OX=3702 GN=LTD PE=1 SV... [more]
A2YLX74.3e-4961.71Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. indica OX=39946 GN=LTD ... [more]
A3BKF24.3e-4961.71Protein LHCP TRANSLOCATION DEFECT OS=Oryza sativa subsp. japonica OX=39947 GN=LT... [more]
Match NameE-valueIdentityDescription
XP_022150983.19.47e-116100.00protein LHCP TRANSLOCATION DEFECT [Momordica charantia][more]
XP_004152919.12.19e-9684.52protein LHCP TRANSLOCATION DEFECT [Cucumis sativus] >KGN56143.1 hypothetical pro... [more]
XP_038903413.11.26e-9584.52protein LHCP TRANSLOCATION DEFECT [Benincasa hispida][more]
XP_008463435.12.97e-9483.93PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo] >KAA0033947.1 protei... [more]
XP_022985270.13.08e-9485.12protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A6J1DAX74.58e-116100.00protein LHCP TRANSLOCATION DEFECT OS=Momordica charantia OX=3673 GN=LOC111019010... [more]
A0A0A0L3091.06e-9684.52ANK_REP_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G078... [more]
A0A5D3BT071.44e-9483.93Protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A1S3CJ751.44e-9483.93protein LHCP TRANSLOCATION DEFECT OS=Cucumis melo OX=3656 GN=LOC103501599 PE=4 S... [more]
A0A6J1JAV91.49e-9485.12protein LHCP TRANSLOCATION DEFECT OS=Cucurbita maxima OX=3661 GN=LOC111483311 PE... [more]
Match NameE-valueIdentityDescription
AT1G50900.11.4e-5566.27Ankyrin repeat family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 90..167
e-value: 1.0E-5
score: 27.2
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 90..158
IPR044242Protein LHCP TRANSLOCATION DEFECT-likePANTHERPTHR47317PROTEIN LHCP TRANSLOCATION DEFECTcoord: 1..168

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC10g1034.1MC10g1034.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090391 granum assembly
biological_process GO:0006886 intracellular protein transport
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma