MC10g0978 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC10g0978
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	50S ribosomal protein L24
Location	MC10: 8600202 .. 8602943 (-)
RNA-Seq Expression	MC10g0978
Synteny	MC10g0978

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCGAAAGTGATTTGGAATGGAATTAAGGATGAATACGTCACCGTTTAAAGCTCAACCCTCCAGCGAGCCAACACCTAGAATCCGGTTTGCTATTTTTGCAGTTTGCATTATCCATTTGTAGCCTGTAAATTGGAGAACAGCCACCATCTCGCAAGCAGCAGCAGCAGCAAAAATGGCAGCCATGGCTGCGCTTCAGAGCTCCATGACCTCTCTTTCGCTCTCTTCCAATTCCTTCCTCGGCCAACGTCTTCCGCTCCCCACCATTTACGCGGCGCCTGTACGGTTTTCTTCTCTAACTTTCCATTCAATTGTTATCTCATTCCGCTTCATTTTACGCGCTTTTCTCTTCTCTTTGCCTCCCAATTCGGTTCTTATGAGAAATTAGGGCTGGTTCCTTGGTTGGGTCAACTTTAGAATGAAATTTAGCCAATACAAAATACTTCTGGAATCTGTTAATTTGCTTTCCCCTGTGATCTAATTTCATTTTTGCTCAGTAAATTGTTCGTTCAACTCGCAATCTGAGCAGCATCCGTCAATTTTCCCCAACGTCGAGAGAGTATTATTTCTACTTGTACATTTTCCTTTTAATTATTTTCACTCTCGTCTTGGAAGTGATGATGATTTGGTTGAAATTAGAACTTAACAAATTTTATCAGGCAGCCATTATCTTAGCTTCTCATTCATCCAAACTTTTCTCTTCTTTTCCCCTTGTTTTGATTTTCTTACAAATATTTTGCATTGTTGATATTGTTTGATATACTACCTGTAAATAGCCCAATTCAAATGCAAGTATAGAACAGTTTCACAGCATTCCAAAAATGGATGTTGCTCTAAGTATATGGATGATGTTACAGCAACCAGTGAGCAAAANCCAACCCTCGAAATCAAGCTGATAAATTGCATCAGTTATTGTTTATATTTGAGCTTATTTTGCGTCATATTGTATTCAAGTAAGTTTTCAGAGTATTTTATATCTAAGTATCTCTTGTTTAACATGCAGGTAACGTCAAAAGAGAAGCCATGTCTCATAGTAATGAGGGTTGGTATTTTTTGTCTTTTCATGATTTCATCATCCTTCAACTTGTTATTTAAGGGAAGATCAATTATTTACTACAAAGAGTATATGTGGGAAAAAAGAAAAGAGGTGAAACAGGAATAAGCTTGATGGTTGAGTTGCTGAGAAAATAAGATACTTGTTGCTACTTTTGCTTCTGATATTGATAATGTATTGTGATCCTTCCATATTTACAAGTGACAAATCGTTTTTGATGATCATCATTCAATGCAACTGTAAGCAATTTTCCTTTTAAGATGTTAATTAAGAAGATATTCAATGCAATTGAAGCAATATCGATTGCTTGTTTGAAAAGTTCTTCAAAGTGCATTCAACTTTTTCTGAAAAGTGCTTCTATATTGTAGCCGGACATAAACCTTTGAGATAGGAAGTATTTTTCACCATTTAAAAGCACTTTTTCAGAGTTAAAAACACTCCCATACATTTCTTAAATAGTATTCTTTTTTCTAGAAATCTTAATAGAGAAATTGTTTCACTTAAAACTACTGCTTCTAAAAGTCACTTCAAACCAATTGAAGTATCAATGGTAAAGCTTTATAGTGTTCTTATAATTGTTCTTAATGCAAGTTGTTCTTTCCAGTAATGTTCATCAGAATCTTTTCTCTTCCAAATTAACTCTGCCACAGAACTAAAAGTTTATAATGAATCAATGATATATTCGGTGTTTCTGTTCTTTGATTTCGCTTTGGCTTGAGATCTAATTTGTAATGGTAATATTGGAAATTATACACTTTTTCCGATTTATTTACTTCTCTTTTCATTTGTTTTCACCTTATTGGCAGCTAAAAAGATGGGAACGGAAGGAATGCAAGCCAAACAGCCTTCCGGTATTACACAAAATGCATGTCAAGGTTGGAGACACGGTGAAAGTTATTGCTGGCCGTGATAAGGGAAAAATTGGAGAAATCACAAAAATTTTTAAACATAATAGCAAAGTGATAGTGAAAGAAATAAATTTGAAGACAAAGCATGTAAAGAGCAGAGAAGAGGAAGAAAAAGGACAGATTATCAAGGTTTGTTTTTCTTCTTTGTAATCAATACAATATTACAAATCATCAACTGATGTCTATACAAAAAGAAAATTTAGCAATGGTAAGTTTAGTCTTCAACCAGAAAACTGCCCACATTTATGTGTCAAGAAGTGACTCTCATTTGTATGAACTGGATTGATTCTTTATTTGATTACTTCTTCATAGTCTCATGTTCAACAGATTAGTTTCACCTCATGGTCTAATTTCATTTCGGTTCTGACATTTCAGATTGAGGCGCCCATCCATAGCTCGAACGTGATGCTTTACTCAAAAGAACAAAATGTAGCGAGCCGGGTCGGTCACAAAACCCTTGAAAGTGGACAACGAGTACGCTATCTCATTAAAACTGGCGAAATAATTGACAGTGCGGAAAATTGGAAGAAACTGAAGGAAGAGAAGAGCAAAACTGAAGTGGCTGCAACTGCTTAAGAATCCTTTGTAAGAATAGACTTACCATCACTGTAGTTATGAAGCTCAAAGGGCACTTTCAGCTGCCCATTTCTCCTTTTTAGCAAACATTTTTGTTGCTGTCTGTTTGTTCATGGAGCATAGTGAAGTGATATTGATTCGATTGTTCATTGTTTATTTATATGAAAAGCTGGAACAGTTTTTTCTTTCCTCTAATTATTTTCAAG

mRNA sequence

ACCGAAAGTGATTTGGAATGGAATTAAGGATGAATACGTCACCGTTTAAAGCTCAACCCTCCAGCGAGCCAACACCTAGAATCCGGTTTGCTATTTTTGCAGTTTGCATTATCCATTTGTAGCCTGTAAATTGGAGAACAGCCACCATCTCGCAAGCAGCAGCAGCAGCAAAAATGGCAGCCATGGCTGCGCTTCAGAGCTCCATGACCTCTCTTTCGCTCTCTTCCAATTCCTTCCTCGGCCAACGTCTTCCGCTCCCCACCATTTACGCGGCGCCTGTAACGTCAAAAGAGAAGCCATGTCTCATAGTAATGAGGCTAAAAAGATGGGAACGGAAGGAATGCAAGCCAAACAGCCTTCCGGTATTACACAAAATGCATGTCAAGGTTGGAGACACGGTGAAAGTTATTGCTGGCCGTGATAAGGGAAAAATTGGAGAAATCACAAAAATTTTTAAACATAATAGCAAAGTGATAGTGAAAGAAATAAATTTGAAGACAAAGCATGTAAAGAGCAGAGAAGAGGAAGAAAAAGGACAGATTATCAAGATTGAGGCGCCCATCCATAGCTCGAACGTGATGCTTTACTCAAAAGAACAAAATGTAGCGAGCCGGGTCGGTCACAAAACCCTTGAAAGTGGACAACGAGTACGCTATCTCATTAAAACTGGCGAAATAATTGACAGTGCGGAAAATTGGAAGAAACTGAAGGAAGAGAAGAGCAAAACTGAAGTGGCTGCAACTGCTTAAGAATCCTTTGTAAGAATAGACTTACCATCACTGTAGTTATGAAGCTCAAAGGGCACTTTCAGCTGCCCATTTCTCCTTTTTAGCAAACATTTTTGTTGCTGTCTGTTTGTTCATGGAGCATAGTGAAGTGATATTGATTCGATTGTTCATTGTTTATTTATATGAAAAGCTGGAACAGTTTTTTCTTTCCTCTAATTATTTTCAAG

Coding sequence (CDS)

ATGGCAGCCATGGCTGCGCTTCAGAGCTCCATGACCTCTCTTTCGCTCTCTTCCAATTCCTTCCTCGGCCAACGTCTTCCGCTCCCCACCATTTACGCGGCGCCTGTAACGTCAAAAGAGAAGCCATGTCTCATAGTAATGAGGCTAAAAAGATGGGAACGGAAGGAATGCAAGCCAAACAGCCTTCCGGTATTACACAAAATGCATGTCAAGGTTGGAGACACGGTGAAAGTTATTGCTGGCCGTGATAAGGGAAAAATTGGAGAAATCACAAAAATTTTTAAACATAATAGCAAAGTGATAGTGAAAGAAATAAATTTGAAGACAAAGCATGTAAAGAGCAGAGAAGAGGAAGAAAAAGGACAGATTATCAAGATTGAGGCGCCCATCCATAGCTCGAACGTGATGCTTTACTCAAAAGAACAAAATGTAGCGAGCCGGGTCGGTCACAAAACCCTTGAAAGTGGACAACGAGTACGCTATCTCATTAAAACTGGCGAAATAATTGACAGTGCGGAAAATTGGAAGAAACTGAAGGAAGAGAAGAGCAAAACTGAAGTGGCTGCAACTGCTTAA

Protein sequence

MAAMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEKGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKSKTEVAATA

Homology

[Close]

BLAST of MC10g0978 vs. ExPASy Swiss-Prot
Match: P11893 (50S ribosomal protein L24, chloroplastic OS=Pisum sativum OX=3888 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.1e-72
Identity = 150/192 (78.12%), Postives = 165/192 (85.94%), Query Frame = 0


Query: 3   AMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTS---KEKPCLIVMRLKRWERKECKP 62
           AMA+LQSSM+SLSLSSNSFLGQ  PL  I  +P       EK CLIVM+LKRWERKECKP
Sbjct: 5   AMASLQSSMSSLSLSSNSFLGQ--PLSPITLSPFLQGKPTEKKCLIVMKLKRWERKECKP 64

Query: 63  NSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEE 122
           NSLPVLHK+HVKVGDTVKVI+G +KG+IGEITKIFKHNS VIVK+INLKTKHVKS +E E
Sbjct: 65  NSLPVLHKLHVKVGDTVKVISGHEKGQIGEITKIFKHNSSVIVKDINLKTKHVKSNQEGE 124

Query: 123 KGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLK 182
            GQI K+EAPIHSSNVMLYSKE++V SRVGHK LE+G+RVRYLIKTGEIIDS ENWKKLK
Sbjct: 125 PGQINKVEAPIHSSNVMLYSKEKDVTSRVGHKVLENGKRVRYLIKTGEIIDSEENWKKLK 184

Query: 183 EEKSKT-EVAAT 191
           E   KT EVAAT
Sbjct: 185 EANKKTAEVAAT 194

[Close]

BLAST of MC10g0978 vs. ExPASy Swiss-Prot
Match: P92959 (50S ribosomal protein L24, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL24 PE=2 SV=2)

HSP 1 Score: 270.0 bits (689), Expect = 2.0e-71
Identity = 141/196 (71.94%), Postives = 165/196 (84.18%), Query Frame = 0


Query: 1   MAAMAALQSSMTSLSLS-SNSFLGQRL--PLPTIYAAPVTSKEKPCLIVMRLKRWERKEC 60
           MA M+ALQSS TSLSLS S+SFLGQRL  P+     +PV   E PCL++ +LKRWERKEC
Sbjct: 1   MATMSALQSSFTSLSLSPSSSFLGQRLISPISLSVTSPVKPAENPCLVLAKLKRWERKEC 60

Query: 61  KPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREE 120
           KPNSLP+LHKMHVK GDTVKVI+GRDKGKIGE+TKIF HNS +++K++NLKTKH+KSREE
Sbjct: 61  KPNSLPILHKMHVKFGDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREE 120

Query: 121 EEKGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKK 180
            E GQI+KIEAPIHSSNVMLYSKE++V SRVGHK LE GQ+VRYLIKTGE+ID+ E WK 
Sbjct: 121 GEPGQIVKIEAPIHSSNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKL 180

Query: 181 LKEEKSK--TEVAATA 192
           LKE K K  T+VA T+
Sbjct: 181 LKEAKDKETTQVAVTS 196

[Close]

BLAST of MC10g0978 vs. ExPASy Swiss-Prot
Match: P27683 (50S ribosomal protein L24, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL24 PE=1 SV=2)

HSP 1 Score: 265.8 bits (678), Expect = 3.8e-70
Identity = 144/193 (74.61%), Postives = 164/193 (84.97%), Query Frame = 0


Query: 1   MAAMAALQSSMTSLSLSSNSFLGQRL-PLPTIYAAPVTSKEKPCLIVMRLKRWERKECKP 60
           MAAMAALQSS TSLSLSSNSFLGQRL P PT      T    PCLIVMR+KRWERK+CKP
Sbjct: 1   MAAMAALQSSFTSLSLSSNSFLGQRLFPSPTTLQVK-TEGHSPCLIVMRIKRWERKDCKP 60

Query: 61  NSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEE 120
           NSLP LHKMHVKVGDTVKVI+G +KGKIGEI+KI KHNS VI+K++NLKTKHVKS+EE E
Sbjct: 61  NSLPKLHKMHVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKDLNLKTKHVKSKEEGE 120

Query: 121 KGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLK 180
           +GQIIKIEA IHSSNVMLYSKEQ VASRVGHK LE G++VRYLIKTGEI+D+ + WK+++
Sbjct: 121 QGQIIKIEAAIHSSNVMLYSKEQEVASRVGHKILEDGRKVRYLIKTGEIVDTPDRWKEIQ 180

Query: 181 EEK-SKTEVAATA 192
            +K S+T VA  A
Sbjct: 181 NKKESETAVAVAA 192

[Close]

BLAST of MC10g0978 vs. ExPASy Swiss-Prot
Match: Q02764 (50S ribosomal protein L24, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL24 PE=1 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.8e-70
Identity = 139/188 (73.94%), Postives = 154/188 (81.91%), Query Frame = 0


Query: 4   MAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPNSLP 63
           MAALQSS   L   S SF GQR   P      V S E PCLI  +LKRWERKECKPNSLP
Sbjct: 1   MAALQSSFAGL---STSFFGQRFSPPLSLPPLVKSTEGPCLIQAKLKRWERKECKPNSLP 60

Query: 64  VLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEKGQI 123
           VLHKMHVK+GDTVK+I+G DKGK+GEIT+I KHNSKV+VK++NLKTKHVKSR E+E GQI
Sbjct: 61  VLHKMHVKLGDTVKIISGHDKGKVGEITEIIKHNSKVVVKDVNLKTKHVKSRSEDEPGQI 120

Query: 124 IKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKEEKS 183
           +KIEAPIHSSNVMLYSKEQ VASRVGHKTL++G+RVRYLIKTGEIIDSAENWKK  +EK 
Sbjct: 121 VKIEAPIHSSNVMLYSKEQKVASRVGHKTLDNGKRVRYLIKTGEIIDSAENWKKAVKEKE 180

Query: 184 KTEVAATA 192
           KT  A  A
Sbjct: 181 KTTEAVAA 185

[Close]

BLAST of MC10g0978 vs. ExPASy Swiss-Prot
Match: B1XJS8 (50S ribosomal protein L24 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rplX PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.1e-32
Identity = 67/113 (59.29%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 58  KPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREE 117
           + +S P  HKMHVK GDTV+VI+GRDKGK+GE+ K    +SKV+VK++N++TKHVK ++E
Sbjct: 4   RKSSTPTRHKMHVKTGDTVQVISGRDKGKVGEVIKTLPKSSKVVVKDVNIRTKHVKPQQE 63

Query: 118 EEKGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIID 171
            E GQI   EAPIHSSNVM YS+++ VASR+G++  E G++VR L KTGE+ID
Sbjct: 64  GESGQIQTFEAPIHSSNVMHYSEKEKVASRIGYQLTEDGRKVRVLKKTGEVID 116

[Close]

BLAST of MC10g0978 vs. NCBI nr
Match: XP_022142723.1 (50S ribosomal protein L24, chloroplastic [Momordica charantia])

HSP 1 Score: 357 bits (916), Expect = 7.78e-124
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MAAMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 60
           MAAMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEK 120
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEK
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEK 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKE 180

Query: 181 EKSKTEVAATA 191
           EKSKTEVAATA
Sbjct: 181 EKSKTEVAATA 191

[Close]

BLAST of MC10g0978 vs. NCBI nr
Match: XP_038903308.1 (50S ribosomal protein L24, chloroplastic [Benincasa hispida])

HSP 1 Score: 342 bits (877), Expect = 6.86e-118
Identity = 182/191 (95.29%), Postives = 186/191 (97.38%), Query Frame = 0


Query: 1   MAAMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 60
           MAAMAALQSSMT+LSLSSNSFLGQRLP PTIYAAPVTSKEKPCLIVMRLKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEK 120
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIV EINLKTKHVKSREEEE+
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVNEINLKTKHVKSREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLE+G+RVRYLIKTGEIIDS ENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLENGKRVRYLIKTGEIIDSVENWKKLKE 180

Query: 181 EKSKTEVAATA 191
           E SKTEVA TA
Sbjct: 181 ENSKTEVATTA 191

[Close]

BLAST of MC10g0978 vs. NCBI nr
Match: XP_008452322.1 (PREDICTED: 50S ribosomal protein L24, chloroplastic [Cucumis melo] >KAA0046925.1 50S ribosomal protein L24 [Cucumis melo var. makuwa] >TYK03227.1 50S ribosomal protein L24 [Cucumis melo var. makuwa])

HSP 1 Score: 333 bits (854), Expect = 2.20e-114
Identity = 176/191 (92.15%), Postives = 182/191 (95.29%), Query Frame = 0


Query: 1   MAAMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 60
           MAAMAALQSSMT+LSLSSNSFLGQRLP P IYAAP+TSKEKPCLIVM+LKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEK 120
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV+V EINLKTKHVKSREEEE+
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKEQNV SRVGHK LE G+RVRYLIKTGEIIDS ENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180

Query: 181 EKSKTEVAATA 191
            KSKTEVA TA
Sbjct: 181 AKSKTEVATTA 191

[Close]

BLAST of MC10g0978 vs. NCBI nr
Match: XP_004149305.1 (50S ribosomal protein L24, chloroplastic [Cucumis sativus] >XP_031739317.1 50S ribosomal protein L24, chloroplastic [Cucumis sativus])

HSP 1 Score: 328 bits (842), Expect = 1.48e-112
Identity = 172/191 (90.05%), Postives = 181/191 (94.76%), Query Frame = 0


Query: 1   MAAMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 60
           MAAMAALQSSMT+LSLSSNSFLGQRLP PTIYAAP+TSKEKPCLIVM+LKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEK 120
           SLPV+HKMHVK+GDTVKVIAGRDKGKIGEITKIFKHNSKV+V EINLKTKHVKSREEEE+
Sbjct: 61  SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKEQ+V SRVGHK LE G+RVRYLIKTGEIIDS ENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKE 180

Query: 181 EKSKTEVAATA 191
             SK EVA TA
Sbjct: 181 ANSKAEVATTA 191

[Close]

BLAST of MC10g0978 vs. NCBI nr
Match: KAG7015483.1 (50S ribosomal protein L24, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 326 bits (835), Expect = 1.73e-111
Identity = 172/191 (90.05%), Postives = 185/191 (96.86%), Query Frame = 0


Query: 1   MAAMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 60
           MAAM +LQSSMT+LSLSS+SFLGQRL   TI+AAPVTSKEKPCLIVM+LKRWERKECKPN
Sbjct: 1   MAAMVSLQSSMTALSLSSSSFLGQRLQPSTIFAAPVTSKEKPCLIVMKLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEK 120
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV VKEINLKTKHVKSREEEE+
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVTVKEINLKTKHVKSREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKE 180
           GQIIK+EAPIHSSNVMLYSKE++VASRVGHKTLE+G+RVRYLIKTGEIIDS +NWKKLKE
Sbjct: 121 GQIIKVEAPIHSSNVMLYSKEKDVASRVGHKTLENGKRVRYLIKTGEIIDSTDNWKKLKE 180

Query: 181 EKSKTEVAATA 191
           EKSKTEVA+TA
Sbjct: 181 EKSKTEVASTA 191

[Close]

BLAST of MC10g0978 vs. ExPASy TrEMBL
Match: A0A6J1CNZ8 (50S ribosomal protein L24, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012769 PE=3 SV=1)

HSP 1 Score: 357 bits (916), Expect = 3.76e-124
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MAAMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 60
           MAAMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEK 120
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEK
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEK 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKE 180

Query: 181 EKSKTEVAATA 191
           EKSKTEVAATA
Sbjct: 181 EKSKTEVAATA 191

[Close]

BLAST of MC10g0978 vs. ExPASy TrEMBL
Match: A0A5D3BUT2 (50S ribosomal protein L24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00400 PE=3 SV=1)

HSP 1 Score: 333 bits (854), Expect = 1.06e-114
Identity = 176/191 (92.15%), Postives = 182/191 (95.29%), Query Frame = 0


Query: 1   MAAMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 60
           MAAMAALQSSMT+LSLSSNSFLGQRLP P IYAAP+TSKEKPCLIVM+LKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEK 120
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV+V EINLKTKHVKSREEEE+
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKEQNV SRVGHK LE G+RVRYLIKTGEIIDS ENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180

Query: 181 EKSKTEVAATA 191
            KSKTEVA TA
Sbjct: 181 AKSKTEVATTA 191

[Close]

BLAST of MC10g0978 vs. ExPASy TrEMBL
Match: A0A1S3BTL8 (50S ribosomal protein L24, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493382 PE=3 SV=1)

HSP 1 Score: 333 bits (854), Expect = 1.06e-114
Identity = 176/191 (92.15%), Postives = 182/191 (95.29%), Query Frame = 0


Query: 1   MAAMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 60
           MAAMAALQSSMT+LSLSSNSFLGQRLP P IYAAP+TSKEKPCLIVM+LKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPIIYAAPITSKEKPCLIVMKLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEK 120
           SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKV+V EINLKTKHVKSREEEE+
Sbjct: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKEQNV SRVGHK LE G+RVRYLIKTGEIIDS ENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQNVTSRVGHKILEDGKRVRYLIKTGEIIDSTENWKKLKE 180

Query: 181 EKSKTEVAATA 191
            KSKTEVA TA
Sbjct: 181 AKSKTEVATTA 191

[Close]

BLAST of MC10g0978 vs. ExPASy TrEMBL
Match: A0A0A0L6H1 (KOW domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G098540 PE=3 SV=1)

HSP 1 Score: 328 bits (842), Expect = 7.17e-113
Identity = 172/191 (90.05%), Postives = 181/191 (94.76%), Query Frame = 0


Query: 1   MAAMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 60
           MAAMAALQSSMT+LSLSSNSFLGQRLP PTIYAAP+TSKEKPCLIVM+LKRWERKECKPN
Sbjct: 1   MAAMAALQSSMTALSLSSNSFLGQRLPPPTIYAAPITSKEKPCLIVMKLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEK 120
           SLPV+HKMHVK+GDTVKVIAGRDKGKIGEITKIFKHNSKV+V EINLKTKHVKSREEEE+
Sbjct: 61  SLPVVHKMHVKIGDTVKVIAGRDKGKIGEITKIFKHNSKVVVNEINLKTKHVKSREEEEQ 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKE 180
           GQIIKIEAPIHSSNVMLYSKEQ+V SRVGHK LE G+RVRYLIKTGEIIDS ENWKKLKE
Sbjct: 121 GQIIKIEAPIHSSNVMLYSKEQDVVSRVGHKVLEDGKRVRYLIKTGEIIDSTENWKKLKE 180

Query: 181 EKSKTEVAATA 191
             SK EVA TA
Sbjct: 181 ANSKAEVATTA 191

[Close]

BLAST of MC10g0978 vs. ExPASy TrEMBL
Match: A0A6J1J4F0 (50S ribosomal protein L24, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111483309 PE=3 SV=1)

HSP 1 Score: 326 bits (835), Expect = 8.37e-112
Identity = 172/191 (90.05%), Postives = 184/191 (96.34%), Query Frame = 0


Query: 1   MAAMAALQSSMTSLSLSSNSFLGQRLPLPTIYAAPVTSKEKPCLIVMRLKRWERKECKPN 60
           MAAM +LQSSMT+LSLSS+SFLGQRL   TI+AAPVTSKEKPCLIVM+LKRWERKECKPN
Sbjct: 1   MAAMVSLQSSMTALSLSSSSFLGQRLQPSTIFAAPVTSKEKPCLIVMKLKRWERKECKPN 60

Query: 61  SLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEK 120
           SLPVLHKMHV+VGDTVKVIAGRDKGKIGEITKIFKHNSKV VKEINLKTKHVKSREEEEK
Sbjct: 61  SLPVLHKMHVRVGDTVKVIAGRDKGKIGEITKIFKHNSKVTVKEINLKTKHVKSREEEEK 120

Query: 121 GQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKKLKE 180
           GQIIK+EAPIHSSNVMLYSKE++VASRVGHKTLE+G+RVRYLIKTGEIIDS +NWKKLKE
Sbjct: 121 GQIIKVEAPIHSSNVMLYSKEKDVASRVGHKTLENGKRVRYLIKTGEIIDSTDNWKKLKE 180

Query: 181 EKSKTEVAATA 191
           EKSKTEVA TA
Sbjct: 181 EKSKTEVATTA 191

[Close]

BLAST of MC10g0978 vs. TAIR 10
Match: AT5G54600.1 (Translation protein SH3-like family protein )

HSP 1 Score: 270.0 bits (689), Expect = 1.4e-72
Identity = 141/196 (71.94%), Postives = 165/196 (84.18%), Query Frame = 0


Query: 1   MAAMAALQSSMTSLSLS-SNSFLGQRL--PLPTIYAAPVTSKEKPCLIVMRLKRWERKEC 60
           MA M+ALQSS TSLSLS S+SFLGQRL  P+     +PV   E PCL++ +LKRWERKEC
Sbjct: 1   MATMSALQSSFTSLSLSPSSSFLGQRLISPISLSVTSPVKPAENPCLVLAKLKRWERKEC 60

Query: 61  KPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREE 120
           KPNSLP+LHKMHVK GDTVKVI+GRDKGKIGE+TKIF HNS +++K++NLKTKH+KSREE
Sbjct: 61  KPNSLPILHKMHVKFGDTVKVISGRDKGKIGEVTKIFTHNSTIVIKDVNLKTKHMKSREE 120

Query: 121 EEKGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKK 180
            E GQI+KIEAPIHSSNVMLYSKE++V SRVGHK LE GQ+VRYLIKTGE+ID+ E WK 
Sbjct: 121 GEPGQIVKIEAPIHSSNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKL 180

Query: 181 LKEEKSK--TEVAATA 192
           LKE K K  T+VA T+
Sbjct: 181 LKEAKDKETTQVAVTS 196

[Close]

BLAST of MC10g0978 vs. TAIR 10
Match: AT5G54600.2 (Translation protein SH3-like family protein )

HSP 1 Score: 231.1 bits (588), Expect = 7.5e-61
Identity = 128/196 (65.31%), Postives = 147/196 (75.00%), Query Frame = 0


Query: 1   MAAMAALQSSMTSLSLS-SNSFLGQRL--PLPTIYAAPVTSKEKPCLIVMRLKRWERKEC 60
           MA M+ALQSS TSLSLS S+SFLGQRL  P+     +PV   E PCL++ +LKRWERKEC
Sbjct: 1   MATMSALQSSFTSLSLSPSSSFLGQRLISPISLSVTSPVKPAENPCLVLAKLKRWERKEC 60

Query: 61  KPNSLPVLHKMHVKVGDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREE 120
           KPNSLP+LHKMHVK GDTVKVI+GRDKGKIGE+TKIF HNS +                 
Sbjct: 61  KPNSLPILHKMHVKFGDTVKVISGRDKGKIGEVTKIFTHNSTI----------------- 120

Query: 121 EEKGQIIKIEAPIHSSNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTGEIIDSAENWKK 180
              GQI+KIEAPIHSSNVMLYSKE++V SRVGHK LE GQ+VRYLIKTGE+ID+ E WK 
Sbjct: 121 --PGQIVKIEAPIHSSNVMLYSKEKDVVSRVGHKVLEDGQKVRYLIKTGELIDTIEKWKL 177

Query: 181 LKEEKSK--TEVAATA 192
           LKE K K  T+VA T+
Sbjct: 181 LKEAKDKETTQVAVTS 177

[Close]

BLAST of MC10g0978 vs. TAIR 10
Match: AT5G23535.1 (KOW domain-containing protein )

HSP 1 Score: 68.2 bits (165), Expect = 8.4e-12
Identity = 38/94 (40.43%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 73  GDTVKVIAGRDKGKIGEITKIFKHNSKVIVKEINLKTKHVKSREEEEKGQIIKIEAPIHS 132
           GD V +I G+DKG+ G I ++ +  ++VIV+  NL  KH+K   + E G I  +EAP+H+
Sbjct: 18  GDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLIKKHIKGGPDHE-GGIFTVEAPLHA 77

Query: 133 SNVMLYSKEQNVASRVGHKTLESGQRVRYLIKTG 167
           SNV +         +VG K LE G +VR    TG
Sbjct: 78  SNVQVVDPVTGRPCKVGVKYLEDGTKVRVARGTG 110

The following BLAST results are available for this feature:

BLAST of MC10g0978 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P11893	1.1e-72	78.13	50S ribosomal protein L24, chloroplastic OS=Pisum sativum OX=3888 GN=RPL24 PE=2 ...	[more]
P92959	2.0e-71	71.94	50S ribosomal protein L24, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2...	[more]
P27683	3.8e-70	74.61	50S ribosomal protein L24, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL24 P...	[more]
Q02764	3.8e-70	73.94	50S ribosomal protein L24, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL24 P...	[more]
B1XJS8	1.1e-32	59.29	50S ribosomal protein L24 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / P...	[more]

BLAST of MC10g0978 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142723.1	7.78e-124	100.00	50S ribosomal protein L24, chloroplastic [Momordica charantia]	[more]
XP_038903308.1	6.86e-118	95.29	50S ribosomal protein L24, chloroplastic [Benincasa hispida]	[more]
XP_008452322.1	2.20e-114	92.15	PREDICTED: 50S ribosomal protein L24, chloroplastic [Cucumis melo] >KAA0046925.1...	[more]
XP_004149305.1	1.48e-112	90.05	50S ribosomal protein L24, chloroplastic [Cucumis sativus] >XP_031739317.1 50S r...	[more]
KAG7015483.1	1.73e-111	90.05	50S ribosomal protein L24, chloroplastic [Cucurbita argyrosperma subsp. argyrosp...	[more]

BLAST of MC10g0978 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNZ8	3.76e-124	100.00	50S ribosomal protein L24, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A5D3BUT2	1.06e-114	92.15	50S ribosomal protein L24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BTL8	1.06e-114	92.15	50S ribosomal protein L24, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103493382...	[more]
A0A0A0L6H1	7.17e-113	90.05	KOW domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G098540 PE=3 SV...	[more]
A0A6J1J4F0	8.37e-112	90.05	50S ribosomal protein L24, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of MC10g0978 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54600.1	1.4e-72	71.94	Translation protein SH3-like family protein	[more]
AT5G54600.2	7.5e-61	65.31	Translation protein SH3-like family protein	[more]
AT5G23535.1	8.4e-12	40.43	KOW domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005824	KOW	SMART	SM00739	kow_9	coord: 69..96 e-value: 5.7E-7 score: 39.2
IPR005824	KOW	PFAM	PF00467	KOW	coord: 72..103 e-value: 5.3E-9 score: 35.7
IPR003256	Ribosomal protein L24	TIGRFAM	TIGR01079	TIGR01079	coord: 67..169 e-value: 4.3E-34 score: 115.1
IPR003256	Ribosomal protein L24	PFAM	PF17136	ribosomal_L24	coord: 105..169 e-value: 1.0E-20 score: 73.8
IPR003256	Ribosomal protein L24	PANTHER	PTHR12903	MITOCHONDRIAL RIBOSOMAL PROTEIN L24	coord: 4..189
IPR003256	Ribosomal protein L24	HAMAP	MF_01326_B	Ribosomal_L24_B	coord: 68..164 score: 18.83231
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 63..168 e-value: 3.9E-33 score: 115.8
None	No IPR available	PANTHER	PTHR12903:SF11	50S RIBOSOMAL PROTEIN L24, CHLOROPLASTIC	coord: 4..189
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 73..90
IPR041988	Ribosomal protein L26/L24, KOW domain	CDD	cd06089	KOW_RPL26	coord: 73..137 e-value: 3.90595E-26 score: 93.3481
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 66..168

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC10g0978.1	MC10g0978.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0032544	plastid translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding