MC10g0935 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC10g0935
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	RING-type domain-containing protein
Location	MC10: 8102620 .. 8102751 (+)
RNA-Seq Expression	MC10g0935
Synteny	MC10g0935

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATGCGCGATTTGTTTGGAGGAATTTGGGGATAGGGCTTCGTGCAGAGTTTTCCCCAATTGCAAACATATGTTTCACACCAATTGCATAATCAGCTGGTTAGGGCTTAATCGAACTTGTCCGATATGTCGG

mRNA sequence

GAATGCGCGATTTGTTTGGAGGAATTTGGGGATAGGGCTTCGTGCAGAGTTTTCCCCAATTGCAAACATATGTTTCACACCAATTGCATAATCAGCTGGTTAGGGCTTAATCGAACTTGTCCGATATGTCGG

Coding sequence (CDS)

GAATGCGCGATTTGTTTGGAGGAATTTGGGGATAGGGCTTCGTGCAGAGTTTTCCCCAATTGCAAACATATGTTTCACACCAATTGCATAATCAGCTGGTTAGGGCTTAATCGAACTTGTCCGATATGTCGG

Protein sequence

ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR

Homology

[Close]

BLAST of MC10g0935 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-10
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 1   ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR 45
           EC++CL EF D    R+ PNC H+FH +CI  WL  N  CP+CR
Sbjct: 137 ECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCR 180

[Close]

BLAST of MC10g0935 vs. ExPASy Swiss-Prot
Match: Q8LF65 (RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 1.8e-10
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 1   ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR 45
           EC++CL EF D  S RV PNCKH FH +CI  W   + +CP+CR
Sbjct: 75  ECSVCLSEFKDNESGRVMPNCKHTFHVHCIDMWFHSHSSCPLCR 118

[Close]

BLAST of MC10g0935 vs. ExPASy Swiss-Prot
Match: Q6NKR1 (RING-H2 finger protein ATL28 OS=Arabidopsis thaliana OX=3702 GN=ATL28 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-10
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 1   ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR 45
           ECAICL EF D  + R+   C+H FH+NCI  W  L++TCP+CR
Sbjct: 102 ECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCR 145

[Close]

BLAST of MC10g0935 vs. ExPASy Swiss-Prot
Match: Q9LUL6 (Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana OX=3702 GN=ATL61 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.3e-10
Identity = 25/44 (56.82%), Postives = 27/44 (61.36%), Query Frame = 0


Query: 1   ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR 45
           EC +CL E  D    RV P+C H FH  CI SWL  N TCPICR
Sbjct: 87  ECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICR 130

[Close]

BLAST of MC10g0935 vs. ExPASy Swiss-Prot
Match: Q8RXX9 (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 3.9e-10
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 1   ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR 45
           ECAICL EF D  + R+ P C H+FH +CI +WL  + TCP+CR
Sbjct: 127 ECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCR 170

[Close]

BLAST of MC10g0935 vs. NCBI nr
Match: KAG6600728.1 (putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 92.4 bits (228), Expect = 2.30e-22
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1   ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR 44
           ECAICLE FG+R SCRVFPNCKHMFHT+CII WLG+N TCPICR
Sbjct: 99  ECAICLEAFGNRVSCRVFPNCKHMFHTHCIIKWLGINLTCPICR 142

[Close]

BLAST of MC10g0935 vs. NCBI nr
Match: XP_023545744.1 (RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.4 bits (228), Expect = 3.56e-22
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1   ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR 44
           ECAICLE FG+R SCRVFPNCKHMFHT+CII WLG+N TCPICR
Sbjct: 116 ECAICLEAFGNRVSCRVFPNCKHMFHTHCIIKWLGINLTCPICR 159

[Close]

BLAST of MC10g0935 vs. NCBI nr
Match: KAG7031368.1 (RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 92.4 bits (228), Expect = 6.07e-21
Identity = 37/44 (84.09%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1   ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR 44
           ECAICLE FG+R SCRVFPNCKHMFHT+CII WLG+N TCPICR
Sbjct: 260 ECAICLEAFGNRVSCRVFPNCKHMFHTHCIIKWLGINLTCPICR 303

[Close]

BLAST of MC10g0935 vs. NCBI nr
Match: KAG6577374.1 (RING-H2 finger protein ATL8, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 85.1 bits (209), Expect = 1.64e-19
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 0


Query: 1   ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR 44
           +CAICLEEF +   CRVFPNCKHMFHT+CI+ WLG+N+TCP+CR
Sbjct: 97  QCAICLEEFENTDLCRVFPNCKHMFHTHCIVRWLGINQTCPVCR 140

[Close]

BLAST of MC10g0935 vs. NCBI nr
Match: XP_011652743.1 (uncharacterized protein LOC105435076 [Cucumis sativus] >KGN56259.2 hypothetical protein Csa_011552 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 3.87e-19
Identity = 33/44 (75.00%), Postives = 40/44 (90.91%), Query Frame = 0


Query: 1   ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR 44
           EC ICLE+ G+R SCRVFPNCKH+FHT+CII+WL +N+TCPICR
Sbjct: 222 ECTICLEDLGERVSCRVFPNCKHIFHTHCIINWLEINQTCPICR 265

[Close]

BLAST of MC10g0935 vs. ExPASy TrEMBL
Match: A0A0A0L7Y8 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104940 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.85e-19
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 0


Query: 1  ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPI 42
          EC ICLE+ G+R SCRVFPNCKH+FHT+CII+WL +N+TCPI
Sbjct: 40 ECTICLEDLGERVSCRVFPNCKHIFHTHCIINWLEINQTCPI 81

[Close]

BLAST of MC10g0935 vs. ExPASy TrEMBL
Match: A0A445BYM1 (RING-type domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g040254 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.32e-15
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 1   ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR 44
           ECAICLE+F D   C+VFP CKHM+H+NCI +WL  N TCPICR
Sbjct: 95  ECAICLEDFEDGQCCQVFPVCKHMYHSNCIDTWLQKNVTCPICR 138

[Close]

BLAST of MC10g0935 vs. ExPASy TrEMBL
Match: A0A444Y4F4 (RING-type domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g092657 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.50e-15
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 1   ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR 44
           ECAIC+E+F D   C+VFP CKHM+H+NCI +WL  N TCPICR
Sbjct: 116 ECAICMEDFEDGQYCQVFPKCKHMYHSNCIDTWLQKNPTCPICR 159

[Close]

BLAST of MC10g0935 vs. ExPASy TrEMBL
Match: A0A6P4BX25 (E3 ubiquitin-protein ligase RING1-like OS=Arachis duranensis OX=130453 GN=LOC107462572 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.50e-15
Identity = 29/44 (65.91%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 1   ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR 44
           ECAIC+E+F D   C+VFP CKHM+H+NCI +WL  N TCPICR
Sbjct: 116 ECAICMEDFEDGQYCQVFPKCKHMYHSNCIDTWLQKNPTCPICR 159

[Close]

BLAST of MC10g0935 vs. ExPASy TrEMBL
Match: A0A444Y4D6 (RING-type domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g092645 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.17e-15
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 1   ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR 44
           ECAICLE+F D   C+VFP CKHM+H+NCI +WL  N TCPICR
Sbjct: 117 ECAICLEDFEDGQCCQVFPVCKHMYHSNCIDNWLQKNVTCPICR 160

[Close]

BLAST of MC10g0935 vs. TAIR 10
Match: AT4G15975.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-11
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 1   ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR 45
           EC++CL EF D  S RV PNCKH FH +CI  W   + +CP+CR
Sbjct: 75  ECSVCLSEFKDNESGRVMPNCKHTFHVDCIDMWFHSHSSCPLCR 118

[Close]

BLAST of MC10g0935 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 1.2e-11
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 0


Query: 1   ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR 45
           EC++CL EF D    R+ PNC H+FH +CI  WL  N  CP+CR
Sbjct: 137 ECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCR 180

[Close]

BLAST of MC10g0935 vs. TAIR 10
Match: AT2G35420.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-11
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 1   ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR 45
           ECAICL EF D  + R+   C+H FH+NCI  W  L++TCP+CR
Sbjct: 102 ECAICLSEFSDEDTVRLITVCRHPFHSNCIDLWFELHKTCPVCR 145

[Close]

BLAST of MC10g0935 vs. TAIR 10
Match: AT3G14320.1 (Zinc finger, C3HC4 type (RING finger) family protein )

HSP 1 Score: 65.1 bits (157), Expect = 1.6e-11
Identity = 25/44 (56.82%), Postives = 27/44 (61.36%), Query Frame = 0


Query: 1   ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR 45
           EC +CL E  D    RV P+C H FH  CI SWL  N TCPICR
Sbjct: 87  ECVVCLSELADGDKARVLPSCDHWFHVECIDSWLQSNSTCPICR 130

[Close]

BLAST of MC10g0935 vs. TAIR 10
Match: AT3G05200.1 (RING/U-box superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 2.8e-11
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 1   ECAICLEEFGDRASCRVFPNCKHMFHTNCIISWLGLNRTCPICR 45
           ECAICL EF D  + R+ P C H+FH +CI +WL  + TCP+CR
Sbjct: 127 ECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTCPVCR 170

The following BLAST results are available for this feature:

BLAST of MC10g0935 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSW9	1.8e-10	52.27	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
Q8LF65	1.8e-10	54.55	RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2	[more]
Q6NKR1	2.3e-10	54.55	RING-H2 finger protein ATL28 OS=Arabidopsis thaliana OX=3702 GN=ATL28 PE=2 SV=1	[more]
Q9LUL6	2.3e-10	56.82	Putative RING-H2 finger protein ATL61 OS=Arabidopsis thaliana OX=3702 GN=ATL61 P...	[more]
Q8RXX9	3.9e-10	54.55	E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV...	[more]

BLAST of MC10g0935 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600728.1	2.30e-22	84.09	putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_023545744.1	3.56e-22	84.09	RING-H2 finger protein ATL52-like [Cucurbita pepo subsp. pepo]	[more]
KAG7031368.1	6.07e-21	84.09	RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperm...	[more]
KAG6577374.1	1.64e-19	72.73	RING-H2 finger protein ATL8, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_011652743.1	3.87e-19	75.00	uncharacterized protein LOC105435076 [Cucumis sativus] >KGN56259.2 hypothetical ...	[more]

BLAST of MC10g0935 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L7Y8	5.85e-19	73.81	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G104940 P...	[more]
A0A445BYM1	1.32e-15	68.18	RING-type domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A08g04025...	[more]
A0A444Y4F4	1.50e-15	65.91	RING-type domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g09265...	[more]
A0A6P4BX25	1.50e-15	65.91	E3 ubiquitin-protein ligase RING1-like OS=Arachis duranensis OX=130453 GN=LOC107...	[more]
A0A444Y4D6	2.17e-15	68.18	RING-type domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B08g09264...	[more]

BLAST of MC10g0935 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15975.1	1.2e-11	54.55	RING/U-box superfamily protein	[more]
AT5G43420.1	1.2e-11	52.27	RING/U-box superfamily protein	[more]
AT2G35420.1	1.6e-11	54.55	RING/U-box superfamily protein	[more]
AT3G14320.1	1.6e-11	56.82	Zinc finger, C3HC4 type (RING finger) family protein	[more]
AT3G05200.1	2.8e-11	54.55	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 2..43 e-value: 3.0E-7 score: 40.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 1..44 e-value: 7.5E-14 score: 51.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 2..44 score: 12.813844
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 1..44 e-value: 3.3E-17 score: 63.8
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 1..44
None	No IPR available	PANTHER	PTHR45798:SF62	RING-H2 FINGER PROTEIN ATL3-LIKE	coord: 1..44
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 1..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC10g0935.1	MC10g0935.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane