MC09g_new0484 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g_new0484
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	lysM domain receptor-like kinase 3
Location	MC09: 23015903 .. 23017021 (-)
RNA-Seq Expression	MC09g_new0484
Synteny	MC09g_new0484

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGACTCTGAGGCTGCTCTGGAAGCTGTCGTGGATGGAAATCTGCAAGCCGGCTATCCGATGGACGATGTTTACAAGGTAAATTCAACTTATAACTTTTTCGTCGGTGCTCGTGGCAAAAGCATTTTCAGTGAGGTAAGAAACATTATCCAAACGTAGAATGAAGTGAGTTTGGTCATTTAGGATACTTTAAAAAGTCTATAAGATTATGTCTCCAGTCTTTGAAGTTTAAAACTACCTTAACCTTACAATTTCGTGTATATAACCAAGTTTCTATCATATATACACAATAAACTTATGAGCCTTATGTCTTATAATTAGAAAATCATAATATTTTAACAAAATTTATGTAGGTTCTTAAATTTCATTAAACTTGGAATATGATACGAATTTATTAAACCTTTTTGAAAATGCGATCAAAGTCTTACATTGGTTAAATAAGGGAATATCATGAGTATATAGATGAGGACAATTATCATGAAAAATAAAGTCGTATGTCTAAAACGGACAATATCATGCTATTGTAGATATTTAGAGTACAAGGGATAAAATTGAAAGTTAGCATATGTGTTAGAAACATTTTTTTTATAATTGAGTGACTTGTAATTTGAGCCATTGAATACTTCTTGAATAAAAAATAGTTTTAAGTGGGTGATTAGGAAGTGTCAAGAATCCAACATTAAAAAGAGAAGAGACCTAACAATGTCTACTTCTTTCGTACTGATTTTGAGATGAAATCCATAAATATTAATAATGAGATTTTGAACGCACGGGTGGTTGCAGATGGGGGAGATAGCAGCATGGTGCTTGAACGAGAATCCGGTGGGGAGACCGGAGATGGGGGAGATTGTTGCTTTGCTGTCGCAGCTCGTGACTTCGGCCGTCGAGTGGGAGGCTTCGCTGGGCGGGAGCAGCCAGGTTTTCAGCGGCCTCTTCAGTGGAAGATGATCAACCATTAATAACTAACTGAACCTCACATTCCATACTTTTTTTTTATTACTATTATTTTTATTTTTTTTCATTTTGTATTGTTTTGTGGGACGAAGGATGATTGTAAATTCATTAAATTTATCTGCTGCAACCTGGCAATTTACAGCGTCAAAGAAGAAGCACGCGTGGAT

mRNA sequence

ATGGACGATGTTTACAAGATGGGGGAGATAGCAGCATGGTGCTTGAACGAGAATCCGGTGGGGAGACCGGAGATGGGGGAGATTGTTGCTTTGCTGTCGCAGCTCGTGACTTCGGCCGTCGAGTGGGAGGCTTCGCTGGGCGGGAGCAGCCAGGTTTTCAGCGGCCTCTTCAGTGGAAGATGA

Coding sequence (CDS)

ATGGACGATGTTTACAAGATGGGGGAGATAGCAGCATGGTGCTTGAACGAGAATCCGGTGGGGAGACCGGAGATGGGGGAGATTGTTGCTTTGCTGTCGCAGCTCGTGACTTCGGCCGTCGAGTGGGAGGCTTCGCTGGGCGGGAGCAGCCAGGTTTTCAGCGGCCTCTTCAGTGGAAGATGA

Protein sequence

MDDVYKMGEIAAWCLNENPVGRPEMGEIVALLSQLVTSAVEWEASLGGSSQVFSGLFSGR

Homology

[Close]

BLAST of MC09g_new0484 vs. ExPASy Swiss-Prot
Match: F4IB81 (LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana OX=3702 GN=LYK3 PE=2 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-10
Identity = 28/59 (47.46%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 2   DDVYKMGEIAAWCLNENPVGRPEMGEIVALLSQLVTSAVEWEASLGGSSQVFSGLFSGR 61
           D ++K+  +A  C++++P+ RP M ++V  LSQ++ S++EWEA+L G+SQVFSGL  GR
Sbjct: 593 DCLFKIATLAKQCVDDDPILRPNMKQVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR 651

[Close]

BLAST of MC09g_new0484 vs. NCBI nr
Match: KAE8648712.1 (hypothetical protein Csa_009355 [Cucumis sativus])

HSP 1 Score: 113 bits (283), Expect = 1.74e-30
Identity = 54/60 (90.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MDDVYKMGEIAAWCLNENPVGRPEMGEIVALLSQLVTSAVEWEASLGGSSQVFSGLFSGR 60
           ++DVYKMGEIAAWCLNENPVGRPEM EIVALLSQL+TSAVEWEASLGG+SQVFSGLF+GR
Sbjct: 80  IEDVYKMGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 139

[Close]

BLAST of MC09g_new0484 vs. NCBI nr
Match: XP_022151770.1 (lysM domain receptor-like kinase 3 [Momordica charantia])

HSP 1 Score: 120 bits (300), Expect = 4.75e-30
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MDDVYKMGEIAAWCLNENPVGRPEMGEIVALLSQLVTSAVEWEASLGGSSQVFSGLFSGR 60
           MDDVYKMGEIAAWCLNENPVGRPEM EIVALLSQLVTSAVEWEASLGGSSQVFSGLFSGR
Sbjct: 446 MDDVYKMGEIAAWCLNENPVGRPEMREIVALLSQLVTSAVEWEASLGGSSQVFSGLFSGR 505

[Close]

BLAST of MC09g_new0484 vs. NCBI nr
Match: XP_038893263.1 (lysM domain receptor-like kinase 3 [Benincasa hispida])

HSP 1 Score: 113 bits (282), Expect = 1.78e-28
Identity = 54/60 (90.00%), Postives = 58/60 (96.67%), Query Frame = 0


Query: 1   MDDVYKMGEIAAWCLNENPVGRPEMGEIVALLSQLVTSAVEWEASLGGSSQVFSGLFSGR 60
           M+DVYKMGEIAAWCLNENPVGRPEM EIV LLSQL+TSAVEWEASLGG+SQVFSGLF+GR
Sbjct: 260 MEDVYKMGEIAAWCLNENPVGRPEMREIVPLLSQLMTSAVEWEASLGGNSQVFSGLFTGR 319

[Close]

BLAST of MC09g_new0484 vs. NCBI nr
Match: KAG6601525.1 (LysM domain receptor-like kinase 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114 bits (285), Expect = 1.01e-27
Identity = 54/60 (90.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MDDVYKMGEIAAWCLNENPVGRPEMGEIVALLSQLVTSAVEWEASLGGSSQVFSGLFSGR 60
           MDD+YKMGEIAAWCLNE+PVGRPEM EIVALLSQL+TSAVEWEASLGG+SQVFSGLF+GR
Sbjct: 564 MDDIYKMGEIAAWCLNEDPVGRPEMHEIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 623

[Close]

BLAST of MC09g_new0484 vs. NCBI nr
Match: XP_022957303.1 (lysM domain receptor-like kinase 3 [Cucurbita moschata])

HSP 1 Score: 114 bits (285), Expect = 1.01e-27
Identity = 54/60 (90.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MDDVYKMGEIAAWCLNENPVGRPEMGEIVALLSQLVTSAVEWEASLGGSSQVFSGLFSGR 60
           MDD+YKMGEIAAWCLNE+PVGRPEM EIVALLSQL+TSAVEWEASLGG+SQVFSGLF+GR
Sbjct: 564 MDDIYKMGEIAAWCLNEDPVGRPEMHEIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 623

[Close]

BLAST of MC09g_new0484 vs. ExPASy TrEMBL
Match: A0A6J1DC46 (lysM domain receptor-like kinase 3 OS=Momordica charantia OX=3673 GN=LOC111019674 PE=4 SV=1)

HSP 1 Score: 120 bits (300), Expect = 2.30e-30
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MDDVYKMGEIAAWCLNENPVGRPEMGEIVALLSQLVTSAVEWEASLGGSSQVFSGLFSGR 60
           MDDVYKMGEIAAWCLNENPVGRPEM EIVALLSQLVTSAVEWEASLGGSSQVFSGLFSGR
Sbjct: 446 MDDVYKMGEIAAWCLNENPVGRPEMREIVALLSQLVTSAVEWEASLGGSSQVFSGLFSGR 505

[Close]

BLAST of MC09g_new0484 vs. ExPASy TrEMBL
Match: A0A6J1GZU2 (lysM domain receptor-like kinase 3 OS=Cucurbita moschata OX=3662 GN=LOC111458742 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 4.88e-28
Identity = 54/60 (90.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MDDVYKMGEIAAWCLNENPVGRPEMGEIVALLSQLVTSAVEWEASLGGSSQVFSGLFSGR 60
           MDD+YKMGEIAAWCLNE+PVGRPEM EIVALLSQL+TSAVEWEASLGG+SQVFSGLF+GR
Sbjct: 564 MDDIYKMGEIAAWCLNEDPVGRPEMHEIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 623

[Close]

BLAST of MC09g_new0484 vs. ExPASy TrEMBL
Match: A0A0A0KVJ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598790 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 4.99e-28
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 0


Query: 7  MGEIAAWCLNENPVGRPEMGEIVALLSQLVTSAVEWEASLGGSSQVFSGLFSGR 60
          MGEIAAWCLNENPVGRPEM EIVALLSQL+TSAVEWEASLGG+SQVFSGLF+GR
Sbjct: 1  MGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 54

[Close]

BLAST of MC09g_new0484 vs. ExPASy TrEMBL
Match: A0A1S3BH07 (lysM domain receptor-like kinase 3 OS=Cucumis melo OX=3656 GN=LOC103489554 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 8.55e-28
Identity = 54/60 (90.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MDDVYKMGEIAAWCLNENPVGRPEMGEIVALLSQLVTSAVEWEASLGGSSQVFSGLFSGR 60
           ++DVYKMGEIAAWCLNENPVGRPEM EIVALLSQL+TSAVEWEASLGG+SQVFSGLF+GR
Sbjct: 534 IEDVYKMGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 593

[Close]

BLAST of MC09g_new0484 vs. ExPASy TrEMBL
Match: A0A5D3CUR4 (LysM domain receptor-like kinase 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35G001300 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 9.19e-28
Identity = 54/60 (90.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 1   MDDVYKMGEIAAWCLNENPVGRPEMGEIVALLSQLVTSAVEWEASLGGSSQVFSGLFSGR 60
           ++DVYKMGEIAAWCLNENPVGRPEM EIVALLSQL+TSAVEWEASLGG+SQVFSGLF+GR
Sbjct: 565 IEDVYKMGEIAAWCLNENPVGRPEMREIVALLSQLMTSAVEWEASLGGNSQVFSGLFTGR 624

[Close]

BLAST of MC09g_new0484 vs. TAIR 10
Match: AT1G51940.1 (protein kinase family protein / peptidoglycan-binding LysM domain-containing protein )

HSP 1 Score: 66.6 bits (161), Expect = 7.6e-12
Identity = 28/59 (47.46%), Postives = 45/59 (76.27%), Query Frame = 0


Query: 2   DDVYKMGEIAAWCLNENPVGRPEMGEIVALLSQLVTSAVEWEASLGGSSQVFSGLFSGR 61
           D ++K+  +A  C++++P+ RP M ++V  LSQ++ S++EWEA+L G+SQVFSGL  GR
Sbjct: 593 DCLFKIATLAKQCVDDDPILRPNMKQVVISLSQILLSSIEWEATLAGNSQVFSGLVQGR 651

[Close]

BLAST of MC09g_new0484 vs. TAIR 10
Match: AT3G57120.1 (Protein kinase superfamily protein )

HSP 1 Score: 41.6 bits (96), Expect = 2.6e-04
Identity = 16/43 (37.21%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 4   VYKMGEIAAWCLNENPVGRPEMGEIVALLSQLVTSAVEWEASL 47
           V K+  +A  C+ ++PV RPEMG +   +SQL   + +W A++
Sbjct: 401 VEKLTRLALDCVQDDPVNRPEMGRVAGKISQLYLESEKWSANM 443

[Close]

BLAST of MC09g_new0484 vs. TAIR 10
Match: AT3G21630.1 (chitin elicitor receptor kinase 1 )

HSP 1 Score: 40.8 bits (94), Expect = 4.5e-04
Identity = 24/59 (40.68%), Postives = 29/59 (49.15%), Query Frame = 0


Query: 2   DDVYKMGEIAAWCLNENPVGRPEMGEIVALLSQLVTSAVEWEASLGGSSQVFSGLFSGR 61
           D VYKM E+   C  EN   RP M  IV  LS L +S   W+     +  + S L SGR
Sbjct: 560 DSVYKMAELGKACTQENAQLRPSMRYIVVALSTLFSSTGNWDVGNFQNEDLVS-LMSGR 617

The following BLAST results are available for this feature:

BLAST of MC09g_new0484 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IB81	1.1e-10	47.46	LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana OX=3702 GN=LYK3 PE=2 ...	[more]

BLAST of MC09g_new0484 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648712.1	1.74e-30	90.00	hypothetical protein Csa_009355 [Cucumis sativus]	[more]
XP_022151770.1	4.75e-30	98.33	lysM domain receptor-like kinase 3 [Momordica charantia]	[more]
XP_038893263.1	1.78e-28	90.00	lysM domain receptor-like kinase 3 [Benincasa hispida]	[more]
KAG6601525.1	1.01e-27	90.00	LysM domain receptor-like kinase 3, partial [Cucurbita argyrosperma subsp. soror...	[more]
XP_022957303.1	1.01e-27	90.00	lysM domain receptor-like kinase 3 [Cucurbita moschata]	[more]

BLAST of MC09g_new0484 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DC46	2.30e-30	98.33	lysM domain receptor-like kinase 3 OS=Momordica charantia OX=3673 GN=LOC11101967...	[more]
A0A6J1GZU2	4.88e-28	90.00	lysM domain receptor-like kinase 3 OS=Cucurbita moschata OX=3662 GN=LOC111458742...	[more]
A0A0A0KVJ0	4.99e-28	92.59	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G598790 PE=4 SV=1	[more]
A0A1S3BH07	8.55e-28	90.00	lysM domain receptor-like kinase 3 OS=Cucumis melo OX=3656 GN=LOC103489554 PE=4 ...	[more]
A0A5D3CUR4	9.19e-28	90.00	LysM domain receptor-like kinase 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]

BLAST of MC09g_new0484 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51940.1	7.6e-12	47.46	protein kinase family protein / peptidoglycan-binding LysM domain-containing pro...	[more]
AT3G57120.1	2.6e-04	37.21	Protein kinase superfamily protein	[more]
AT3G21630.1	4.5e-04	40.68	chitin elicitor receptor kinase 1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044812	LysM domain receptor kinase CERK1/LYK3-like	PANTHER	PTHR46204	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	coord: 1..60
None	No IPR available	PANTHER	PTHR46204:SF8	LYSM-DOMAIN PROTEIN KINASE FAMILY PROTEIN-RELATED	coord: 1..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g_new0484.1	MC09g_new0484.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045087	innate immune response
biological_process	GO:0006468	protein phosphorylation
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0019199	transmembrane receptor protein kinase activity