MC09g_new0276 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g_new0276
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC09: 12598992 .. 12599519 (-)
RNA-Seq Expression	MC09g_new0276
Synteny	MC09g_new0276

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTTCCGTCAAGTTTTGCTACGGTATGGGAGGCGATAGGAGCTCAATTGACAGGGGAAGATCTGGAAATGGGTTCGGTCGTCTGCCGGTCCATTTGGAAGGATAAAAATCAAATTACTTCAAATCGAGAGCCATGGAGTAAGGAAGCCAGATGCGAATGGATTCGTAATTATTTTGAATCTTACCAAAGAACGATATTTCGAAGGAAGTGCATCTCAACAGAGCGTGACCATCCCACCAGATTGGATTATTATTCAGAGCGATGCTGCGTGCAACGAAGGTTGGGTCTAGGGCCGCACAAAACATTCTGTGCTGAAACCAAATTCCTTGATATCGGCCTTTCCCCTTTCTATGCAGAGTTGCAAGCGATTAAGGAAGCCCTTCAATCGGCATTAAGGATGAACTTCAAACTGATTTTGATTCAATCGAATTGTCTTGCGGTAGTCAATCTTCTACAAGGGGAGTGTGAATACAGAAATGAAACAATGGTTTGGTACTCGGACATAAAGGAGTTGAAGATTTAA

mRNA sequence

ATGGGAGTTCCGTCAAGTTTTGCTACGGTATGGGAGGCGATAGGAGCTCAATTGACAGGGGAAGATCTGGAAATGGGTTCGGTCGTCTGCCGGTCCATTTGGAAGGATAAAAATCAAATTACTTCAAATCGAGAGCCATGGAGTAAGGAAGCCAGATGCGAATGGATTCGTAATTATTTTGAATCTTACCAAAGAACGATATTTCGAAGGAAGTGCATCTCAACAGAGCGTGACCATCCCACCAGATTGGATTATTATTCAGAGCGATGCTGCGTGCAACGAAGGTTGGGTCTAGGGCCGCACAAAACATTCTGTGCTGAAACCAAATTCCTTGATATCGGCCTTTCCCCTTTCTATGCAGAGTTGCAAGCGATTAAGGAAGCCCTTCAATCGGCATTAAGGATGAACTTCAAACTGATTTTGATTCAATCGAATTGTCTTGCGGTAGTCAATCTTCTACAAGGGGAGTGTGAATACAGAAATGAAACAATGGTTTGGTACTCGGACATAAAGGAGTTGAAGATTTAA

Coding sequence (CDS)

ATGGGAGTTCCGTCAAGTTTTGCTACGGTATGGGAGGCGATAGGAGCTCAATTGACAGGGGAAGATCTGGAAATGGGTTCGGTCGTCTGCCGGTCCATTTGGAAGGATAAAAATCAAATTACTTCAAATCGAGAGCCATGGAGTAAGGAAGCCAGATGCGAATGGATTCGTAATTATTTTGAATCTTACCAAAGAACGATATTTCGAAGGAAGTGCATCTCAACAGAGCGTGACCATCCCACCAGATTGGATTATTATTCAGAGCGATGCTGCGTGCAACGAAGGTTGGGTCTAGGGCCGCACAAAACATTCTGTGCTGAAACCAAATTCCTTGATATCGGCCTTTCCCCTTTCTATGCAGAGTTGCAAGCGATTAAGGAAGCCCTTCAATCGGCATTAAGGATGAACTTCAAACTGATTTTGATTCAATCGAATTGTCTTGCGGTAGTCAATCTTCTACAAGGGGAGTGTGAATACAGAAATGAAACAATGGTTTGGTACTCGGACATAAAGGAGTTGAAGATTTAA

Protein sequence

MGVPSSFATVWEAIGAQLTGEDLEMGSVVCRSIWKDKNQITSNREPWSKEARCEWIRNYFESYQRTIFRRKCISTERDHPTRLDYYSERCCVQRRLGLGPHKTFCAETKFLDIGLSPFYAELQAIKEALQSALRMNFKLILIQSNCLAVVNLLQGECEYRNETMVWYSDIKELKI

Homology

[Close]

BLAST of MC09g_new0276 vs. NCBI nr
Match: XP_022131661.1 (uncharacterized protein LOC111004786 [Momordica charantia])

HSP 1 Score: 63.2 bits (152), Expect = 1.72e-08
Identity = 42/183 (22.95%), Postives = 82/183 (44.81%), Query Frame = 0


Query: 6   SFATVWEAIGAQLTGEDLEMGSVVCRSIWKDKNQITSNREPWSKEARCEWIRNYFESYQR 65
           SF  +W  +  +L  +  ++ +    +IW D+N         +   RC WI +YF++Y +
Sbjct: 35  SFMDIWLLLYDKLNPQQRDLAAFTXWAIWCDRNSXAHGSSVSTPALRCNWISSYFQNYSQ 94

Query: 66  TIFRRKCISTERDHP-----------TRLDYYSERCCVQRRLGLG----PH--KTFCAET 125
               ++    +   P           + +   S+  C     GLG     H      A++
Sbjct: 95  AQENKRISPQQSSVPPPSCRWLPPRDSAMKVNSDAACRSTSTGLGLIIRDHFGVLLVAKS 154

Query: 126 KFLDIGLSPFYAELQAIKEALQSALRMNFKLILIQSNCLAVVNLLQGECEYRNETMV--W 169
            FL + L+P +AE++ I EAL+ A   ++  ++++S+C   + L+QG+     E ++  W
Sbjct: 155 MFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFSMGEELIGLW 214

[Close]

BLAST of MC09g_new0276 vs. ExPASy TrEMBL
Match: A0A6J1BQ49 (uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004786 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.34e-09
Identity = 42/183 (22.95%), Postives = 82/183 (44.81%), Query Frame = 0


Query: 6   SFATVWEAIGAQLTGEDLEMGSVVCRSIWKDKNQITSNREPWSKEARCEWIRNYFESYQR 65
           SF  +W  +  +L  +  ++ +    +IW D+N         +   RC WI +YF++Y +
Sbjct: 35  SFMDIWLLLYDKLNPQQRDLAAFTXWAIWCDRNSXAHGSSVSTPALRCNWISSYFQNYSQ 94

Query: 66  TIFRRKCISTERDHP-----------TRLDYYSERCCVQRRLGLG----PH--KTFCAET 125
               ++    +   P           + +   S+  C     GLG     H      A++
Sbjct: 95  AQENKRISPQQSSVPPPSCRWLPPRDSAMKVNSDAACRSTSTGLGLIIRDHFGVLLVAKS 154

Query: 126 KFLDIGLSPFYAELQAIKEALQSALRMNFKLILIQSNCLAVVNLLQGECEYRNETMV--W 169
            FL + L+P +AE++ I EAL+ A   ++  ++++S+C   + L+QG+     E ++  W
Sbjct: 155 MFLPMPLNPLFAEIRGILEALKLAASRSYTRLVVESDCQEAIRLVQGDLFSMGEELIGLW 214

The following BLAST results are available for this feature:

BLAST of MC09g_new0276 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g_new0276 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131661.1	1.72e-08	22.95	uncharacterized protein LOC111004786 [Momordica charantia]	[more]

BLAST of MC09g_new0276 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BQ49	8.34e-09	22.95	uncharacterized protein LOC111004786 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]

BLAST of MC09g_new0276 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 104..173 e-value: 1.5E-7 score: 31.3
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 98..174 e-value: 4.9E-5 score: 25.4
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 116..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g_new0276.1	MC09g_new0276.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity