MC09g_new0273 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g_new0273
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC09: 12554462 .. 12554931 (+)
RNA-Seq Expression	MC09g_new0273
Synteny	MC09g_new0273

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCTGTCGGGCTTGTTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTATGGGCCAAGAGGAAGTGACTCGGGAGGAGAAGAAGGAGCGTAGGGATTCTAGTTGCCCCTCATCCCATGATGAAGTGCGGAGATCATTTCTTTGTCGGACGAAAGGGCTTCAAAATACATCGTAAGCTAAACCCGTGTTGACGAATAACCAACCTGCAATGAATAGAAAAAGTATAGTAATGCTATCCCCAATGGAAGCATCGCTTTTTTCTTTTCTAATCAATTTAGGGGGGAAGGAGGAGAGGCACGGGGAAGTCTTGGTTGCTACGGTCTAGGGAGCCGAGTCAGACCATCCCCAAAACCCACCACCTACTGCCAAGTACTCCCCTTAGGAGGAGCCAATTTATCTCATATTAGGGAGAAGCACCCTCGATCAAACTCTGAATTTCATAAGAGAAGAAAGATCGTAGCGTAG

mRNA sequence

ATGGCGGCTGTCGGGCTTGTTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTATGGGCCAAGAGGAAGTGACTCGGGAGGAGAAGAAGGAGCGTAGGGATTCTAGTTGCCCCTCATCCCATGATGAAGTGCGGAGATCATTTCTTTGTCGGACGAAAGGGCTTCAAAATACATCGGGGGAAGGAGGAGAGGCACGGGGAAGTCTTGGTTGCTACGGTCTAGGGAGCCGAGTCAGACCATCCCCAAAACCCACCACCTACTGCCAAGTACTCCCCTTAGGAGGAGCCAATTTATCTCATATTAGGGAGAAGCACCCTCGATCAAACTCTGAATTTCATAAGAGAAGAAAGATCGTAGCGTAG

Coding sequence (CDS)

ATGGCGGCTGTCGGGCTTGTTTCTATTGGACCTGGGGTTGGTCAAGGTACTGCTATGGGCCAAGAGGAAGTGACTCGGGAGGAGAAGAAGGAGCGTAGGGATTCTAGTTGCCCCTCATCCCATGATGAAGTGCGGAGATCATTTCTTTGTCGGACGAAAGGGCTTCAAAATACATCGGGGGAAGGAGGAGAGGCACGGGGAAGTCTTGGTTGCTACGGTCTAGGGAGCCGAGTCAGACCATCCCCAAAACCCACCACCTACTGCCAAGTACTCCCCTTAGGAGGAGCCAATTTATCTCATATTAGGGAGAAGCACCCTCGATCAAACTCTGAATTTCATAAGAGAAGAAAGATCGTAGCGTAG

Protein sequence

MAAVGLVSIGPGVGQGTAMGQEEVTREEKKERRDSSCPSSHDEVRRSFLCRTKGLQNTSGEGGEARGSLGCYGLGSRVRPSPKPTTYCQVLPLGGANLSHIREKHPRSNSEFHKRRKIVA

Homology

[Close]

BLAST of MC09g_new0273 vs. NCBI nr
Match: KAF4349936.1 (hypothetical protein G4B88_002358 [Cannabis sativa])

HSP 1 Score: 59.3 bits (142), Expect = 2.38e-07
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 26 REEKKERRDSSCPSSHDEVRRSFLCRTKGLQ 56
          REEK+ERRDSSCPSSHDEVRRSFLCRTK ++
Sbjct: 36 REEKEERRDSSCPSSHDEVRRSFLCRTKSIR 66

[Close]

BLAST of MC09g_new0273 vs. ExPASy TrEMBL
Match: A0A7J6DV88 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_002358 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 1.15e-07
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 26 REEKKERRDSSCPSSHDEVRRSFLCRTKGLQ 56
          REEK+ERRDSSCPSSHDEVRRSFLCRTK ++
Sbjct: 36 REEKEERRDSSCPSSHDEVRRSFLCRTKSIR 66

The following BLAST results are available for this feature:

BLAST of MC09g_new0273 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g_new0273 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4349936.1	2.38e-07	87.10	hypothetical protein G4B88_002358 [Cannabis sativa]	[more]

BLAST of MC09g_new0273 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6DV88	1.15e-07	87.10	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_002358 PE=4 SV=1	[more]

BLAST of MC09g_new0273 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g_new0273.1	MC09g_new0273.1	mRNA