MC09g_new0256 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC09g_new0256
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
DescriptionFormin-like protein
LocationMC09: 12151138 .. 12154351 (-)
RNA-Seq ExpressionMC09g_new0256
SyntenyMC09g_new0256
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGACCAGGGCTTATCCCCGACCCATGCTCGGTGTCGAGCAGGGCTCAGCCAAATGGCCAGGAAATTCCTTCCTTCTTCTCCAGTCAAGTGAAGTGGCCTAGTCCAAGGACCTCCATGACTCCACAACTCCATCAACGGTAGGTTAGACAAGTCCAACACGAGAGATCTCCAAGAAGATCCTAATGGAGAAACTCCTATAAATAGAACAACATGCTAAACCCTAGAGGTATGCCAAAACCATCTCCCGTACTTTGCATACGACTTCTCCATTTCTAACTTAACCATCGAAACTCGTGTGACAGGAGTCACACCAGTTTAGTGTTGTTCGGTTTTGCAGGGTTATCAGTCTCATGATTATCAAAATTTGATGCGAATTTGGTGAGAACCTAGGAGGCCAAATTTCTGCATCAACATAAAATATCACCTGTTATTGGTAAAAATTTGAAGCTCCACATGGCATACTCCCATTTAGACACATGTACTTGGGCCTAAGCTCGAGTACCCGAAGGCGAGGTGGATGGGAGAGTGGAAGAGCACCAAGCACTTGACTTGACTTTCACCTGAATATGATATATGTTAGCGCATTATATGCTGACATTCAGCAGAAAGACGATTGATTAAGTGTTTGAAATCTTCCGTTATGTCATCGTGCCCTATATATAATGACAGGTACAAAGTACAAAATGTCAGAATCTCACACTCATATCACACGCTTCTCCAATGTATGCAAACTCTTGCAAACAACCCTTGCTCGACATACTCATTACTCCCTCATTTAACTTACGTATTGAAGAGCATTTAGCTAACCCCCACACACCGATCCATATACATTTTAAAAGTATAGAGACAAAAACGTACATTTCGAAAGTATAGAGACTAAAATAAATAAAAGTTAAAAGTATATAGACCAAAATGAATGTTTTGAAAGTACGTAAACCAAAATGAACCAAATCAAAAAATATGACATTGATCAAAATAGTATTTAAACGTATTAATTACATAATTATGTTTTTATTAAATGAAAGATTAATATGTTAATATTAATAATATTAATTATGCTTATATTGAATAAAGGATTTATTATACCTATTAATCTTATCTATATAGAAACATTTTAGTATAACTAAGGTTTAAGCTTTATCTAAGTTTACCTTTTTGAATTAAAATTTAATCTTTAAATTGTGCTTATCATAATTAAATTAATTATAACAACAATTAGAACATCTTAATGTTATTTAAAGGTAATTTTTTTAATATTCATAATAAAATATTTTTTACAATTATTTAACCATATTCTTTTGAAAAAAAAAACTTCAAAAACTTTATGAGTTAGTCGTAGTTATTTTTTATAATAAAAAAGCTGATAGAACATTACAAACATACCATTAAAAAATTTCAACCAAATTTAATGAAAAGGTTATTCAATTTAATGATGGAGGGTTATGTAAAAGTCTCTCCGAAAATTAAAATATTTGTCAACAATTTGATTCATATCTCTATTGATATATCAATGTCAAGGAAAAAAAAATCTCTATTACTATTATCCATTAAATTGAAGAATTCAAAATTGATATTAAGATTCAGTCAATATTTTAGTATAGTGTAATTGCCAAATATTTTAGTATAGTGTAAATTGCCAAACACATACATATATATATTAACAAAAAATCACCCCTACTAATATAATAAATACTAAAATTGTTTAAAAATATTCGTCAACGGAGGTGGGATCAAACTCATGACCTCTTAGTCAAAGATTTGTCTTAACCACTTGAACTATGTTCGATTTAACTAGTTAAATCAGATTTAACTGTAGAAATATATTTAATACCTTGATTTGAGGTGCTATCAGACAAAAATAGAAACCTTTTCCCTTTGGTCATCACGTGACTTGGAAAGTTTGAAACATTACCATTATGGGTCCCACTCCCCTGCAATGCCTTTTTTTTTTTGCAGGTCTAATAAACTTACTGCTAATTTCAGAAAAATAAATAAAATAAACTTAATGCCAAATATATAATATACCACGTCATTGTCACGCTATAATTCAGAATTGGTCTCAATGATTGACACAGTTCCCTCGTTTTCAGACACGTGGTGTCCATAGTTTCATATTTTTTTACATATTAAAATGTCCTATTTTTGTCTTAGGCTAACCATATTATTTCATTTTTAATGTAAGTACACATTTTGAATTGTGTCTTTACAGAATTCTCAATTTCAACTATAATGTACTTTTTTTTTTTTTTTGAAAAAAAATAAAGTTCTACATAGGTCAAAATTTGTTTGCATGATTAGGACTTCTACCTTGTAGAGATGAGATTTTTTAATCTTAAGACTCGCTCACGTAGATAAATTTGAGATCATATAGCAAGTCATCATATCTCTTCCCATCTTAGTATTGGTTGAATGTTAGAGCGTATCATATGGCCCTCTAAATATGCATGTATGTGCCTCAAGTACTTCTTCCGACTCTTTCTAAACAGAGTTGGGAGTTGTAATATCTAAAAAAAATATAAAAAGAATATTACCAACGCTATTTTAGAATGATCGGGAATATTAATATCTCTCGAATATTTTAGAAATAGTCGGGATTTGTAATATTTGAAAAAAAATTAAAAACAATATAGCCCAATAATTTATTAAAATATTGGTGTAAACTGTGAAGTCCATTTATCCCAACTTTTTTTATACAAATAGTCGGGAGTGGCAATTCTTAAAAAAAAAAAATTAAGAATAATATTGCCTTACTATATATTAAAATAGTCGAGAATATAAACATCTCCCGACTATTTTGAAAACTGTTGGGACTGGTAATATATAAAAACAAAATTTTACCCGACTATTATGCAAAAACGTCGGTAAGAGTAACTTCGCCCGACTATTCTTAAAAATAGTCAAGAGCATATTATTTTAAAAAGGATGAAAGAACAATATAGCCTGAAAGTTTATAAAAAGAGTCAGGAGATGTATTCCTTTCCCGACTATTTTAGCCAATAGTCGGCCAAAGTCCCGACTATTATTCTTTAGTCGGGAAAAAGATGTTTGTCCGACGACTTTCTTAGTGTCGGGAATAAAATCGTAGGAAAAAATTCATAATTCTTGTAGTGAGGAGTTGGTCAAATTTCTCTTGCCCCAAGGCAGGAACCTAGCTCTAAGTCGACTTGGGGACGCTGATATTGCTGGTAGAAGATCTGGTGGTCACTAG

mRNA sequence

ATGGGTCGACCAGGGCTTATCCCCGACCCATGCTCGGTGTCGAGCAGGGCTCAGCCAAATGGCCAGGAAATTCCTTCCTTCTTCTCCAGTCAAGTGAAGTGGCCTAGTCCAAGGACCTCCATGACTCCACAACTCCATCAACGGAACCTAGCTCTAAGTCGACTTGGGGACGCTGATATTGCTGGTAGAAGATCTGGTGGTCACTAG

Coding sequence (CDS)

ATGGGTCGACCAGGGCTTATCCCCGACCCATGCTCGGTGTCGAGCAGGGCTCAGCCAAATGGCCAGGAAATTCCTTCCTTCTTCTCCAGTCAAGTGAAGTGGCCTAGTCCAAGGACCTCCATGACTCCACAACTCCATCAACGGAACCTAGCTCTAAGTCGACTTGGGGACGCTGATATTGCTGGTAGAAGATCTGGTGGTCACTAG

Protein sequence

MGRPGLIPDPCSVSSRAQPNGQEIPSFFSSQVKWPSPRTSMTPQLHQRNLALSRLGDADIAGRRSGGH
Homology
[Close]
BLAST of MC09g_new0256 vs. NCBI nr
Match: XP_022157081.1 (formin-like protein 1 [Momordica charantia])

HSP 1 Score: 106 bits (264), Expect = 1.07e-24
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1  MGRPGLIPDPCSVSSRAQPNGQEIPSFFSSQVKWPSPRTSMTPQLHQRNLAL 52
          MGRPGLIPDPCSVSSRAQPNGQEIPSFFSSQVKWPSPRTSMTPQLHQR  +L
Sbjct: 1  MGRPGLIPDPCSVSSRAQPNGQEIPSFFSSQVKWPSPRTSMTPQLHQRPTSL 52

[Close]
BLAST of MC09g_new0256 vs. ExPASy TrEMBL
Match: A0A6J1DWX0 (Formin-like protein OS=Momordica charantia OX=3673 GN=LOC111023891 PE=3 SV=1)

HSP 1 Score: 106 bits (264), Expect = 5.17e-25
Identity = 49/52 (94.23%), Postives = 50/52 (96.15%), Query Frame = 0 

Query: 1  MGRPGLIPDPCSVSSRAQPNGQEIPSFFSSQVKWPSPRTSMTPQLHQRNLAL 52
          MGRPGLIPDPCSVSSRAQPNGQEIPSFFSSQVKWPSPRTSMTPQLHQR  +L
Sbjct: 1  MGRPGLIPDPCSVSSRAQPNGQEIPSFFSSQVKWPSPRTSMTPQLHQRPTSL 52

The following BLAST results are available for this feature:
BLAST of MC09g_new0256 vs.
Match NameE-valueIdentityDescription
BLAST of MC09g_new0256 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022157081.11.07e-2494.23formin-like protein 1 [Momordica charantia][more]
BLAST of MC09g_new0256 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DWX05.17e-2594.23Formin-like protein OS=Momordica charantia OX=3673 GN=LOC111023891 PE=3 SV=1[more]
BLAST of MC09g_new0256 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC09g_new0256.1MC09g_new0256.1mRNA