MC09g1516 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g1516
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	CLAVATA3/ESR (CLE)-related protein 43
Location	MC09: 20978950 .. 20979225 (+)
RNA-Seq Expression	MC09g1516
Synteny	MC09g1516

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTACCAGAAGAATCGCCGCCGTCTCCTCCTCCGCCTCTTCTTTCGCCATTCTAATCTTGATCCTCTGGGTGTCGCAGATTTGGGTCTGCTGCCACTGCCAAGCTAGAGCTTCTCGGATTCTCCCGCCGCCGCTCACCGGCGACGCAAAACACGATGCCAGCGGCAAAAATGAACTTGTCCAGAAATATTTGAGAGGAAGAGCTTCCGATCGCCACGAAGGATTCGAAGACAGCAAACGGAGAGTACCCAGTTGTCCAGATCCTCTCCACAAT

mRNA sequence

ATGTGTACCAGAAGAATCGCCGCCGTCTCCTCCTCCGCCTCTTCTTTCGCCATTCTAATCTTGATCCTCTGGGTGTCGCAGATTTGGGTCTGCTGCCACTGCCAAGCTAGAGCTTCTCGGATTCTCCCGCCGCCGCTCACCGGCGACGCAAAACACGATGCCAGCGGCAAAAATGAACTTGTCCAGAAATATTTGAGAGGAAGAGCTTCCGATCGCCACGAAGGATTCGAAGACAGCAAACGGAGAGTACCCAGTTGTCCAGATCCTCTCCACAAT

Coding sequence (CDS)

ATGTGTACCAGAAGAATCGCCGCCGTCTCCTCCTCCGCCTCTTCTTTCGCCATTCTAATCTTGATCCTCTGGGTGTCGCAGATTTGGGTCTGCTGCCACTGCCAAGCTAGAGCTTCTCGGATTCTCCCGCCGCCGCTCACCGGCGACGCAAAACACGATGCCAGCGGCAAAAATGAACTTGTCCAGAAATATTTGAGAGGAAGAGCTTCCGATCGCCACGAAGGATTCGAAGACAGCAAACGGAGAGTACCCAGTTGTCCAGATCCTCTCCACAAT

Protein sequence

MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPPLTGDAKHDASGKNELVQKYLRGRASDRHEGFEDSKRRVPSCPDPLHN

Homology

[Close]

BLAST of MC09g1516 vs. NCBI nr
Match: XP_022150497.1 (uncharacterized protein LOC111018633 [Momordica charantia])

HSP 1 Score: 178 bits (451), Expect = 1.87e-53
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPPLTGDAKHDASGKNEL 60
          MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPPLTGDAKHDASGKNEL
Sbjct: 1  MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPPLTGDAKHDASGKNEL 60

Query: 61 VQKYLRGRASDRHEGFEDSKRRVPSCPD 88
          VQKYLRGRASDRHEGFEDSKRRVPSC D
Sbjct: 61 VQKYLRGRASDRHEGFEDSKRRVPSCSD 88

[Close]

BLAST of MC09g1516 vs. NCBI nr
Match: KAG7032076.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132 bits (333), Expect = 5.54e-38
Identity = 70/105 (66.67%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 1   MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPP--------LTGDAKH 60
           MCTRRIA  +SS+SSFA+LI ILWVSQIWVC HCQARASRI PPP        LTGD K+
Sbjct: 1   MCTRRIA--TSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKY 60

Query: 61  DASG--KNELVQKYLRGRASDRH---EGFEDSKRRVPSCPDPLHN 92
           +A+   + EL++KY +G+A DRH   EGFEDSKRR+PSCPDPLHN
Sbjct: 61  NANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 103

[Close]

BLAST of MC09g1516 vs. NCBI nr
Match: KAG6601288.1 (CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132 bits (333), Expect = 7.72e-38
Identity = 70/105 (66.67%), Postives = 82/105 (78.10%), Query Frame = 0


Query: 1   MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPP--------LTGDAKH 60
           MCTRRIA  +SS+SSFA+LI ILWVSQIWVC HCQARASRI PPP        LTGD K+
Sbjct: 12  MCTRRIA--TSSSSSFALLIFILWVSQIWVCSHCQARASRIFPPPPPHTADTTLTGDQKY 71

Query: 61  DASG--KNELVQKYLRGRASDRH---EGFEDSKRRVPSCPDPLHN 92
           +A+   + EL++KY +G+A DRH   EGFEDSKRR+PSCPDPLHN
Sbjct: 72  NANANAERELLRKYFKGKAFDRHRRDEGFEDSKRRIPSCPDPLHN 114

[Close]

BLAST of MC09g1516 vs. NCBI nr
Match: KGN52083.1 (hypothetical protein Csa_008231 [Cucumis sativus])

HSP 1 Score: 127 bits (320), Expect = 5.98e-36
Identity = 70/109 (64.22%), Postives = 80/109 (73.39%), Query Frame = 0


Query: 1   MCTRRI--AAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPP------------L 60
           M  RRI  ++ SSS S+FAILILILWVSQIWVCCHCQARASRI PPP            L
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 61  TGDAKHDASGKNELVQKYLRGRASDRH---EGFEDSKRRVPSCPDPLHN 92
           +G+ K +A  KN+L+QKY  GRA DRH   EGFEDSKR++PSCPDPLHN
Sbjct: 61  SGEEKDNA--KNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of MC09g1516 vs. NCBI nr
Match: KAG6573960.1 (CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109 bits (273), Expect = 6.99e-29
Identity = 64/104 (61.54%), Postives = 71/104 (68.27%), Query Frame = 0


Query: 1   MCTRRIAAVSSSASSFAILILILWVSQIWV-CCHCQARASRILPPPL-------TGDAKH 60
           MCTRRIAA    +SSFAILILILWVSQIWV CC  QARASRI PPP        T D   
Sbjct: 1   MCTRRIAA----SSSFAILILILWVSQIWVFCCFSQARASRIFPPPPPPPPPPHTTDKTD 60

Query: 61  DASGKNELVQKYLRGRA----SDRHEGFEDSKRRVPSCPDPLHN 92
            A+ + EL+QKY + RA       HEGF DSKR++PSCPDPLHN
Sbjct: 61  HANRRYELLQKYFKDRAFLDPHRHHEGFVDSKRKIPSCPDPLHN 100

[Close]

BLAST of MC09g1516 vs. ExPASy TrEMBL
Match: A0A6J1DAV9 (uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018633 PE=3 SV=1)

HSP 1 Score: 178 bits (451), Expect = 9.04e-54
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 0


Query: 1  MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPPLTGDAKHDASGKNEL 60
          MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPPLTGDAKHDASGKNEL
Sbjct: 1  MCTRRIAAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPPLTGDAKHDASGKNEL 60

Query: 61 VQKYLRGRASDRHEGFEDSKRRVPSCPD 88
          VQKYLRGRASDRHEGFEDSKRRVPSC D
Sbjct: 61 VQKYLRGRASDRHEGFEDSKRRVPSCSD 88

[Close]

BLAST of MC09g1516 vs. ExPASy TrEMBL
Match: A0A0A0KR66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1)

HSP 1 Score: 127 bits (320), Expect = 2.89e-36
Identity = 70/109 (64.22%), Postives = 80/109 (73.39%), Query Frame = 0


Query: 1   MCTRRI--AAVSSSASSFAILILILWVSQIWVCCHCQARASRILPPP------------L 60
           M  RRI  ++ SSS S+FAILILILWVSQIWVCCHCQARASRI PPP            L
Sbjct: 1   MFNRRITTSSSSSSTSAFAILILILWVSQIWVCCHCQARASRIFPPPPPPPPPHPADKSL 60

Query: 61  TGDAKHDASGKNELVQKYLRGRASDRH---EGFEDSKRRVPSCPDPLHN 92
           +G+ K +A  KN+L+QKY  GRA DRH   EGFEDSKR++PSCPDPLHN
Sbjct: 61  SGEEKDNA--KNDLLQKYFNGRAFDRHRHDEGFEDSKRKIPSCPDPLHN 107

[Close]

BLAST of MC09g1516 vs. ExPASy TrEMBL
Match: A0A061E6F8 (Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.37e-17
Identity = 42/86 (48.84%), Postives = 52/86 (60.47%), Query Frame = 0


Query: 15 SFAILILILWVSQIWVCCHCQARASRILP-----PPLTGDAKHDASGKNELVQKYLRGRA 74
          S  +++LI++  QIWVCC C+A A RILP              D  GK +L QKY  GR+
Sbjct: 14 SSVVVLLIIFFLQIWVCCDCRAGAIRILPGNGMRKMTESQGMKDNKGKGDLFQKYFNGRS 73

Query: 75 ---SDRHEGFEDSKRRVPSCPDPLHN 92
             +    GFE+SKRRVPSCPDPLHN
Sbjct: 74 FSFNKTDRGFEESKRRVPSCPDPLHN 99

[Close]

BLAST of MC09g1516 vs. ExPASy TrEMBL
Match: A0A2C9VNI0 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.90e-14
Identity = 39/92 (42.39%), Postives = 59/92 (64.13%), Query Frame = 0


Query: 12  SASSFAILILILWVSQIWVCCHCQARASRILPPP-LTGDAKH-------DASGKNELVQK 71
           S+S  A+++ ++++ QIWVC  C+A A RI P   +    KH       + + K +L++K
Sbjct: 13  SSSLVALVVFLIFMLQIWVCSDCKAGAIRIFPDNGMPSKLKHRNITTTDNKATKQDLLRK 72

Query: 72  YLRGRASDRH---EGFEDSKRRVPSCPDPLHN 92
           +  GRAS  +   +GFE++KRRVPSCPDPLHN
Sbjct: 73  FFNGRASSFNSSKKGFEENKRRVPSCPDPLHN 104

[Close]

BLAST of MC09g1516 vs. ExPASy TrEMBL
Match: A0A6A1W705 (CLAVATA3/ESR (CLE)-related protein 43 OS=Morella rubra OX=262757 GN=CJ030_MR3G018956 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.01e-14
Identity = 45/92 (48.91%), Postives = 54/92 (58.70%), Query Frame = 0


Query: 15 SFAILILILWVSQIWVCCH--CQARASRILPPPLTGDAKH---------DASGKNELVQK 74
          S  +++LI+ V QIWVCC   CQA A RI P    G+AK          D   K EL++K
Sbjct: 3  STLVVLLIIPVLQIWVCCEYSCQAGAIRIHPG--NGEAKVTKEGSRGSLDKKNKEELLRK 62

Query: 75 YLRGRA---SDRHEGFEDSKRRVPSCPDPLHN 92
          Y  GR    +    GFE+SKRRVPSCPDPLHN
Sbjct: 63 YFNGRTFGFNRTANGFEESKRRVPSCPDPLHN 92

[Close]

BLAST of MC09g1516 vs. TAIR 10
Match: AT1G25425.1 (CLAVATA3/ESR-RELATED 43 )

HSP 1 Score: 41.6 bits (96), Expect = 4.0e-04
Identity = 28/93 (30.11%), Postives = 46/93 (49.46%), Query Frame = 0


Query: 15 SFAILILILWVSQIWVCCHCQARASRILP------------PPLTGDAKHDASGKNELVQ 74
          +F++ +L++ + QIW+      R  R +P              +T   K+       L Q
Sbjct: 9  TFSVALLLISLFQIWL-----FREGRQVPELSDDQLGKDRNTLMTSKNKNKNEDVQRLFQ 68

Query: 75 KYLRGRA---SDRHEGFEDSKRRVPSCPDPLHN 93
          +Y +GR+   ++ +  FEDS RR+PS PD LHN
Sbjct: 69 RYFKGRSFGLNNTNSRFEDSNRRIPSSPDRLHN 96

The following BLAST results are available for this feature:

BLAST of MC09g1516 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g1516 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150497.1	1.87e-53	98.86	uncharacterized protein LOC111018633 [Momordica charantia]	[more]
KAG7032076.1	5.54e-38	66.67	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6601288.1	7.72e-38	66.67	CLAVATA3/ESR (CLE)-related protein 43, partial [Cucurbita argyrosperma subsp. so...	[more]
KGN52083.1	5.98e-36	64.22	hypothetical protein Csa_008231 [Cucumis sativus]	[more]
KAG6573960.1	6.99e-29	61.54	CLAVATA3/ESR (CLE)-related protein 27, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of MC09g1516 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DAV9	9.04e-54	98.86	uncharacterized protein LOC111018633 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A0A0KR66	2.89e-36	64.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G609690 PE=4 SV=1	[more]
A0A061E6F8	2.37e-17	48.84	Clavata3/esr-related 43, putative OS=Theobroma cacao OX=3641 GN=TCM_009879 PE=4 ...	[more]
A0A2C9VNI0	2.90e-14	42.39	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_06G068400 PE=4 SV=...	[more]
A0A6A1W705	3.01e-14	48.91	CLAVATA3/ESR (CLE)-related protein 43 OS=Morella rubra OX=262757 GN=CJ030_MR3G01...	[more]

BLAST of MC09g1516 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G25425.1	4.0e-04	30.11	CLAVATA3/ESR-RELATED 43	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..92
None	No IPR available	PANTHER	PTHR37184:SF2	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 5..92
IPR040274	CLAVATA3/ESR (CLE)-related protein 27/43	PANTHER	PTHR37184	CLAVATA3/ESR (CLE)-RELATED PROTEIN 27	coord: 5..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g1516.1	MC09g1516.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane