MC09g1492 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g1492
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein
Location	MC09: 20801981 .. 20802412 (+)
RNA-Seq Expression	MC09g1492
Synteny	MC09g1492

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGCTCCGCCTTATGTGCAGCTACGGCGGCCATATTGTCCCTCGCCCCCATGATAAGACTCTGTGCTATGTGTGCGGTGAGACTCGGATCGTTGTTGTGGACCGCCATACGTCTTTATCTGACCTCACTGCCCGTTTGTCGAAGACGCTTCTCAATGGGCGTCCGTTTACCCTCAAATATCAACTTCCGAACGAGGACTTGGATTCTCTCATTTCTGTCACCACCGATGAGGATTTGGAGAATATGATTGACGAGTATGATCGGACGGCGAGTAATTCGTCTAATCCCACGGCAAAACCCTCGCGACTTCGTTTGTTCCTGTTCCCAATTAAGCCGGATGTTTCTCAGTCGATCGGGCCAATTCTCGAGAGCTCGAATAGTTCGGAGGACTGGTTTCTGAATGCTTTGAATGGTGCGGGTTTGCTCAACAGA

mRNA sequence

CGGCTCCGCCTTATGTGCAGCTACGGCGGCCATATTGTCCCTCGCCCCCATGATAAGACTCTGTGCTATGTGTGCGGTGAGACTCGGATCGTTGTTGTGGACCGCCATACGTCTTTATCTGACCTCACTGCCCGTTTGTCGAAGACGCTTCTCAATGGGCGTCCGTTTACCCTCAAATATCAACTTCCGAACGAGGACTTGGATTCTCTCATTTCTGTCACCACCGATGAGGATTTGGAGAATATGATTGACGAGTATGATCGGACGGCGAGTAATTCGTCTAATCCCACGGCAAAACCCTCGCGACTTCGTTTGTTCCTGTTCCCAATTAAGCCGGATGTTTCTCAGTCGATCGGGCCAATTCTCGAGAGCTCGAATAGTTCGGAGGACTGGTTTCTGAATGCTTTGAATGGTGCGGGTTTGCTCAACAGA

Coding sequence (CDS)

CGGCTCCGCCTTATGTGCAGCTACGGCGGCCATATTGTCCCTCGCCCCCATGATAAGACTCTGTGCTATGTGTGCGGTGAGACTCGGATCGTTGTTGTGGACCGCCATACGTCTTTATCTGACCTCACTGCCCGTTTGTCGAAGACGCTTCTCAATGGGCGTCCGTTTACCCTCAAATATCAACTTCCGAACGAGGACTTGGATTCTCTCATTTCTGTCACCACCGATGAGGATTTGGAGAATATGATTGACGAGTATGATCGGACGGCGAGTAATTCGTCTAATCCCACGGCAAAACCCTCGCGACTTCGTTTGTTCCTGTTCCCAATTAAGCCGGATGTTTCTCAGTCGATCGGGCCAATTCTCGAGAGCTCGAATAGTTCGGAGGACTGGTTTCTGAATGCTTTGAATGGTGCGGGTTTGCTCAACAGA

Protein sequence

RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKPSRLRLFLFPIKPDVSQSIGPILESSNSSEDWFLNALNGAGLLNR

Homology

[Close]

BLAST of MC09g1492 vs. NCBI nr
Match: XP_038892018.1 (putative mediator of RNA polymerase II transcription subunit 12 [Benincasa hispida])

HSP 1 Score: 286 bits (733), Expect = 2.75e-90
Identity = 142/144 (98.61%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY 60
           RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY
Sbjct: 51  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY 110

Query: 61  QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKPSRLRLFLFPIKPDVSQSIGP 120
           QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKPSRLRLFLFPIKPDVSQSIGP
Sbjct: 111 QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGP 170

Query: 121 ILESSNSSEDWFLNALNGAGLLNR 144
           ILESS SSEDWFLNALNGAGLLNR
Sbjct: 171 ILESSTSSEDWFLNALNGAGLLNR 194

[Close]

BLAST of MC09g1492 vs. NCBI nr
Match: XP_008446641.1 (PREDICTED: RNA polymerase II degradation factor 1 [Cucumis melo] >KAA0034588.1 RNA polymerase II degradation factor 1 [Cucumis melo var. makuwa] >TYK09140.1 RNA polymerase II degradation factor 1 [Cucumis melo var. makuwa])

HSP 1 Score: 286 bits (731), Expect = 4.89e-90
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY 60
           RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY
Sbjct: 51  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY 110

Query: 61  QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKPSRLRLFLFPIKPDVSQSIGP 120
           QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP+AKPSRLRLFLFPIKPDVSQSIGP
Sbjct: 111 QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPSAKPSRLRLFLFPIKPDVSQSIGP 170

Query: 121 ILESSNSSEDWFLNALNGAGLLNR 144
           ILESS SS+DWFLNALNGAGLLNR
Sbjct: 171 ILESSTSSDDWFLNALNGAGLLNR 194

[Close]

BLAST of MC09g1492 vs. NCBI nr
Match: XP_004135079.1 (RNA polymerase II degradation factor 1 [Cucumis sativus] >KGN52111.1 hypothetical protein Csa_009068 [Cucumis sativus])

HSP 1 Score: 285 bits (730), Expect = 7.18e-90
Identity = 141/144 (97.92%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY 60
           RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY
Sbjct: 51  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY 110

Query: 61  QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKPSRLRLFLFPIKPDVSQSIGP 120
           QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKPSRLRLFLFPIKPDVSQSIGP
Sbjct: 111 QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGP 170

Query: 121 ILESSNSSEDWFLNALNGAGLLNR 144
           ILESS SS+DWFLNALNGAGLLNR
Sbjct: 171 ILESSTSSDDWFLNALNGAGLLNR 194

[Close]

BLAST of MC09g1492 vs. NCBI nr
Match: KAG7032060.1 (hypothetical protein SDJN02_06103, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 283 bits (724), Expect = 1.63e-88
Identity = 140/144 (97.22%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY 60
           RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY
Sbjct: 51  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY 110

Query: 61  QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKPSRLRLFLFPIKPDVSQSIGP 120
           QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKPSRLRLFLFP KPDVSQSIGP
Sbjct: 111 QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPAAKPSRLRLFLFPTKPDVSQSIGP 170

Query: 121 ILESSNSSEDWFLNALNGAGLLNR 144
           ILESS SSEDWFLNALNGAG LNR
Sbjct: 171 ILESSTSSEDWFLNALNGAGFLNR 194

[Close]

BLAST of MC09g1492 vs. NCBI nr
Match: XP_022956700.1 (putative uncharacterized protein DDB_G0268364 isoform X2 [Cucurbita moschata])

HSP 1 Score: 280 bits (716), Expect = 1.10e-87
Identity = 139/144 (96.53%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 1   RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY 60
           RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGR FTLKY
Sbjct: 51  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRSFTLKY 110

Query: 61  QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKPSRLRLFLFPIKPDVSQSIGP 120
           QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKPSRLRLFLFP KPDVSQSIGP
Sbjct: 111 QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPAAKPSRLRLFLFPTKPDVSQSIGP 170

Query: 121 ILESSNSSEDWFLNALNGAGLLNR 144
           ILESS SSEDWFLNALNGAG LNR
Sbjct: 171 ILESSTSSEDWFLNALNGAGFLNR 194

[Close]

BLAST of MC09g1492 vs. ExPASy TrEMBL
Match: A0A5A7SVC4 (RNA polymerase II degradation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001310 PE=4 SV=1)

HSP 1 Score: 286 bits (731), Expect = 2.37e-90
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY 60
           RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY
Sbjct: 51  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY 110

Query: 61  QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKPSRLRLFLFPIKPDVSQSIGP 120
           QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP+AKPSRLRLFLFPIKPDVSQSIGP
Sbjct: 111 QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPSAKPSRLRLFLFPIKPDVSQSIGP 170

Query: 121 ILESSNSSEDWFLNALNGAGLLNR 144
           ILESS SS+DWFLNALNGAGLLNR
Sbjct: 171 ILESSTSSDDWFLNALNGAGLLNR 194

[Close]

BLAST of MC09g1492 vs. ExPASy TrEMBL
Match: A0A1S3BF26 (RNA polymerase II degradation factor 1 OS=Cucumis melo OX=3656 GN=LOC103489312 PE=4 SV=1)

HSP 1 Score: 286 bits (731), Expect = 2.37e-90
Identity = 141/144 (97.92%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY 60
           RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY
Sbjct: 51  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY 110

Query: 61  QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKPSRLRLFLFPIKPDVSQSIGP 120
           QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP+AKPSRLRLFLFPIKPDVSQSIGP
Sbjct: 111 QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPSAKPSRLRLFLFPIKPDVSQSIGP 170

Query: 121 ILESSNSSEDWFLNALNGAGLLNR 144
           ILESS SS+DWFLNALNGAGLLNR
Sbjct: 171 ILESSTSSDDWFLNALNGAGLLNR 194

[Close]

BLAST of MC09g1492 vs. ExPASy TrEMBL
Match: A0A0A0KWH3 (PB1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610450 PE=4 SV=1)

HSP 1 Score: 285 bits (730), Expect = 3.48e-90
Identity = 141/144 (97.92%), Postives = 142/144 (98.61%), Query Frame = 0


Query: 1   RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY 60
           RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY
Sbjct: 51  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY 110

Query: 61  QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKPSRLRLFLFPIKPDVSQSIGP 120
           QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKPSRLRLFLFPIKPDVSQSIGP
Sbjct: 111 QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPAAKPSRLRLFLFPIKPDVSQSIGP 170

Query: 121 ILESSNSSEDWFLNALNGAGLLNR 144
           ILESS SS+DWFLNALNGAGLLNR
Sbjct: 171 ILESSTSSDDWFLNALNGAGLLNR 194

[Close]

BLAST of MC09g1492 vs. ExPASy TrEMBL
Match: A0A6J1GYH7 (PB1 domain-containing protein OS=Cucurbita moschata OX=3662 GN=LOC111458340 PE=4 SV=1)

HSP 1 Score: 280 bits (716), Expect = 5.32e-88
Identity = 139/144 (96.53%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 1   RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY 60
           RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGR FTLKY
Sbjct: 51  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRSFTLKY 110

Query: 61  QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKPSRLRLFLFPIKPDVSQSIGP 120
           QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKPSRLRLFLFP KPDVSQSIGP
Sbjct: 111 QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPAAKPSRLRLFLFPTKPDVSQSIGP 170

Query: 121 ILESSNSSEDWFLNALNGAGLLNR 144
           ILESS SSEDWFLNALNGAG LNR
Sbjct: 171 ILESSTSSEDWFLNALNGAGFLNR 194

[Close]

BLAST of MC09g1492 vs. ExPASy TrEMBL
Match: A0A6J1HQW4 (RNA polymerase II degradation factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC111465567 PE=4 SV=1)

HSP 1 Score: 280 bits (716), Expect = 7.87e-88
Identity = 139/144 (96.53%), Postives = 139/144 (96.53%), Query Frame = 0


Query: 1   RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY 60
           RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGR FTLKY
Sbjct: 51  RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRSFTLKY 110

Query: 61  QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKPSRLRLFLFPIKPDVSQSIGP 120
           QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNP AKPSRLRLFLFP KPDVSQSIGP
Sbjct: 111 QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPAAKPSRLRLFLFPTKPDVSQSIGP 170

Query: 121 ILESSNSSEDWFLNALNGAGLLNR 144
           ILESS SSEDWFLNALNGAG LNR
Sbjct: 171 ILESSTSSEDWFLNALNGAGFLNR 194

[Close]

BLAST of MC09g1492 vs. TAIR 10
Match: AT2G01190.1 (Octicosapeptide/Phox/Bem1p family protein )

HSP 1 Score: 216.5 bits (550), Expect = 1.4e-56
Identity = 108/144 (75.00%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 1   RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY 60
           +LR MCSYGGHI+PRPHDK+LCY+ G+TRIVVVDR++SL  L ARLS TLL+GR FTLKY
Sbjct: 74  KLRFMCSYGGHILPRPHDKSLCYMGGDTRIVVVDRNSSLPSLIARLSNTLLDGRSFTLKY 133

Query: 61  QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKPSRLRLFLFPIKPDVSQSIGP 120
           QLP+EDLDSLISVTTDEDL+NMI+EYDRT S S+  + KPSRLRLFLF  KP+ +QS+G 
Sbjct: 134 QLPSEDLDSLISVTTDEDLDNMIEEYDRTISASN--STKPSRLRLFLFTSKPEATQSMGQ 193

Query: 121 ILESSNSSEDWFLNALNGAGLLNR 145
           ILESS  S+DWFLNALN AGLLNR
Sbjct: 194 ILESSAKSDDWFLNALNSAGLLNR 215

[Close]

BLAST of MC09g1492 vs. TAIR 10
Match: AT3G18230.1 (Octicosapeptide/Phox/Bem1p family protein )

HSP 1 Score: 177.2 bits (448), Expect = 9.6e-45
Identity = 90/144 (62.50%), Postives = 114/144 (79.17%), Query Frame = 0


Query: 1   RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRPFTLKY 60
           +LRLMCS+GGHI+PRPHDK+L Y  GETRIVVVDR  SLS L +RLS  LLNGR FTLKY
Sbjct: 63  KLRLMCSFGGHIMPRPHDKSLTYSGGETRIVVVDRRASLSSLRSRLSSMLLNGRSFTLKY 122

Query: 61  QLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKPSRLRLFLFPIKPDVSQSIGP 120
           QLP+EDLDSL+++TTDEDLENMI+EYDR AS+++       RLRLFLF  K + + ++G 
Sbjct: 123 QLPSEDLDSLVTITTDEDLENMIEEYDRAASSAT--ATATQRLRLFLFANKLETAATMGS 182

Query: 121 ILESSNSSEDWFLNALNGAGLLNR 145
           +L+ +  S+ WF++ALN +GLL R
Sbjct: 183 LLDGT-KSDTWFVDALNQSGLLPR 203

[Close]

BLAST of MC09g1492 vs. TAIR 10
Match: AT4G05150.1 (Octicosapeptide/Phox/Bem1p family protein )

HSP 1 Score: 140.2 bits (352), Expect = 1.3e-33
Identity = 78/145 (53.79%), Postives = 102/145 (70.34%), Query Frame = 0


Query: 1   RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLLNGRP-FTLK 60
           R+R MC++GG I+PRP D  LCYV G+ R+V V RHT+ + L ++L+K  L+G+   ++K
Sbjct: 58  RVRFMCTFGGRILPRPPDNQLCYVGGDNRMVAVHRHTTFASLLSKLAK--LSGKSNISVK 117

Query: 61  YQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKPSRLRLFLF-------PIKP 120
           YQLPNEDLD+LISV+TDED+ENM+DEYDR A N  NP A  SRLRLFLF           
Sbjct: 118 YQLPNEDLDALISVSTDEDVENMMDEYDRVAQN-QNPRA--SRLRLFLFTKNVAGEEDND 177

Query: 121 DVSQSIGPILESSNSSEDWFLNALN 138
             + SI  +L+SS + E WFL+ALN
Sbjct: 178 SRASSISSLLDSSVNREQWFLDALN 197

[Close]

BLAST of MC09g1492 vs. TAIR 10
Match: AT5G64430.1 (Octicosapeptide/Phox/Bem1p family protein )

HSP 1 Score: 115.9 bits (289), Expect = 2.6e-26
Identity = 70/141 (49.65%), Postives = 85/141 (60.28%), Query Frame = 0


Query: 1   RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTL----LNGRPF 60
           +++ MCSYGG I PRPHD  L YV GET+I+ VDR      L ++LS         G   
Sbjct: 44  KVKFMCSYGGKIQPRPHDNQLTYVNGETKILSVDRGIRFPVLASKLSTVCGGGDGGGGEV 103

Query: 61  TLKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKPSRLRLFLFPIKPDVSQ 120
           T KYQLP EDLD+LISVT D+DLE+M+ EYDR    SS    KP+R+RLFLFP     S 
Sbjct: 104 TFKYQLPGEDLDALISVTNDDDLEHMMHEYDRLLRLSS----KPARMRLFLFP----ASS 163

Query: 121 SIGPILESSNSSEDWFLNALN 138
             G    S+ S  D F+ ALN
Sbjct: 164 GFGS-QSSTQSDRDRFVEALN 175

[Close]

BLAST of MC09g1492 vs. TAIR 10
Match: AT5G09620.1 (Octicosapeptide/Phox/Bem1p family protein )

HSP 1 Score: 115.5 bits (288), Expect = 3.4e-26
Identity = 68/139 (48.92%), Postives = 87/139 (62.59%), Query Frame = 0


Query: 1   RLRLMCSYGGHIVPRPHDKTLCYVCGETRIVVVDRHTSLSDLTARLSKTLL---NGRPFT 60
           +++LMCSYGG I PRPHD  L YV G+T+I+ VDR      L ++LS       +G   +
Sbjct: 39  KVKLMCSYGGKIQPRPHDNQLTYVNGDTKIMSVDRGIRFPALVSKLSAVCSGGGDGGEIS 98

Query: 61  LKYQLPNEDLDSLISVTTDEDLENMIDEYDRTASNSSNPTAKPSRLRLFLFPIKPDVSQS 120
            KYQLP EDLD+LISVT DEDLE+M+ EYDR    S+    KP+R+RLFLFP  P +S  
Sbjct: 99  FKYQLPGEDLDALISVTNDEDLEHMMHEYDRLLRLST----KPARMRLFLFPSSP-ISGG 158

Query: 121 IGPILESSNSSEDWFLNAL 137
            G   E S  S+   LN +
Sbjct: 159 FGS--EGSTKSDRDTLNPI 170

The following BLAST results are available for this feature:

BLAST of MC09g1492 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g1492 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038892018.1	2.75e-90	98.61	putative mediator of RNA polymerase II transcription subunit 12 [Benincasa hispi...	[more]
XP_008446641.1	4.89e-90	97.92	PREDICTED: RNA polymerase II degradation factor 1 [Cucumis melo] >KAA0034588.1 R...	[more]
XP_004135079.1	7.18e-90	97.92	RNA polymerase II degradation factor 1 [Cucumis sativus] >KGN52111.1 hypothetica...	[more]
KAG7032060.1	1.63e-88	97.22	hypothetical protein SDJN02_06103, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022956700.1	1.10e-87	96.53	putative uncharacterized protein DDB_G0268364 isoform X2 [Cucurbita moschata]	[more]

BLAST of MC09g1492 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVC4	2.37e-90	97.92	RNA polymerase II degradation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BF26	2.37e-90	97.92	RNA polymerase II degradation factor 1 OS=Cucumis melo OX=3656 GN=LOC103489312 P...	[more]
A0A0A0KWH3	3.48e-90	97.92	PB1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G610450 PE=4 SV...	[more]
A0A6J1GYH7	5.32e-88	96.53	PB1 domain-containing protein OS=Cucurbita moschata OX=3662 GN=LOC111458340 PE=4...	[more]
A0A6J1HQW4	7.87e-88	96.53	RNA polymerase II degradation factor 1-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of MC09g1492 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01190.1	1.4e-56	75.00	Octicosapeptide/Phox/Bem1p family protein	[more]
AT3G18230.1	9.6e-45	62.50	Octicosapeptide/Phox/Bem1p family protein	[more]
AT4G05150.1	1.3e-33	53.79	Octicosapeptide/Phox/Bem1p family protein	[more]
AT5G64430.1	2.6e-26	49.65	Octicosapeptide/Phox/Bem1p family protein	[more]
AT5G09620.1	3.4e-26	48.92	Octicosapeptide/Phox/Bem1p family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000270	PB1 domain	SMART	SM00666	PB1_new	coord: 16..110 e-value: 3.7E-30 score: 116.2
IPR000270	PB1 domain	PFAM	PF00564	PB1	coord: 18..109 e-value: 1.8E-18 score: 66.2
IPR000270	PB1 domain	PROSITE	PS51745	PB1	coord: 1..110 score: 13.286085
None	No IPR available	GENE3D	3.10.20.90		coord: 19..108 e-value: 5.4E-12 score: 47.7
None	No IPR available	PANTHER	PTHR31066:SF68	OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN	coord: 1..144
None	No IPR available	PANTHER	PTHR31066	OS05G0427100 PROTEIN-RELATED	coord: 1..144
None	No IPR available	CDD	cd06410	PB1_UP2	coord: 5..108 e-value: 9.19093E-51 score: 155.071
None	No IPR available	SUPERFAMILY	54277	CAD & PB1 domains	coord: 17..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g1492.1	MC09g1492.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003746	translation elongation factor activity