MC09g1000 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC09g1000
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Descriptionubiquitin-conjugating enzyme 11
LocationMC09: 15528580 .. 15528657 (+)
RNA-Seq ExpressionMC09g1000
SyntenyMC09g1000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAATGAAGCCGCCAAAAGTTAGCTTCAAAACTAAAATTTACCATCGCAACATCAATAGTAAAGGTAATATTTGTGTT

mRNA sequence

CCAATGAAGCCGCCAAAAGTTAGCTTCAAAACTAAAATTTACCATCGCAACATCAATAGTAAAGGTAATATTTGTGTT

Coding sequence (CDS)

CCAATGAAGCCGCCAAAAGTTAGCTTCAAAACTAAAATTTACCATCGCAACATCAATAGTAAAGGTAATATTTGTGTT

Protein sequence

PMKPPKVSFKTKIYHRNINSKGNICV
Homology
[Close]
BLAST of MC09g1000 vs. ExPASy Swiss-Prot
Match: P35134 (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana OX=3702 GN=UBC11 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 7.7e-06
Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 27
          P KPPKVSFKTK+YH NINS G+IC+
Sbjct: 61 PFKPPKVSFKTKVYHPNINSNGSICL 86

[Close]
BLAST of MC09g1000 vs. ExPASy Swiss-Prot
Match: Q9C9Y7 (Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana OX=3702 GN=UBC12 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.7e-05
Identity = 19/26 (73.08%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 27
          P KPPKV+FKTK+YH NI+SKG+IC+
Sbjct: 62 PFKPPKVNFKTKVYHPNIDSKGSICL 87

[Close]
BLAST of MC09g1000 vs. ExPASy Swiss-Prot
Match: P15732 (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UBC5 PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.7e-05
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 27
          P KPPKV+F TKIYH NINS GNIC+
Sbjct: 62 PFKPPKVNFTTKIYHPNINSSGNICL 87

[Close]
BLAST of MC09g1000 vs. ExPASy Swiss-Prot
Match: P15731 (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UBC4 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.2e-05
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 27
          P KPPK+SF TKIYH NIN+ GNIC+
Sbjct: 62 PFKPPKISFTTKIYHPNINANGNICL 87

[Close]
BLAST of MC09g1000 vs. ExPASy Swiss-Prot
Match: Q9FKT3 (Ubiquitin-conjugating enzyme E2 30 OS=Arabidopsis thaliana OX=3702 GN=UBC30 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.8e-05
Identity = 18/26 (69.23%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 27
          P KPPKV+F+TK+YH NINS G+IC+
Sbjct: 61 PFKPPKVAFRTKVYHPNINSNGSICL 86

[Close]
BLAST of MC09g1000 vs. NCBI nr
Match: XP_022157782.1 (ubiquitin-conjugating enzyme E2 11-like [Momordica charantia])

HSP 1 Score: 54.7 bits (130), Expect = 6.75e-08
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 26
          PMKPPKV+FKTKIYH NINSKGNIC+
Sbjct: 68 PMKPPKVTFKTKIYHPNINSKGNICL 93

[Close]
BLAST of MC09g1000 vs. NCBI nr
Match: KAG8483662.1 (hypothetical protein CXB51_022511 [Gossypium anomalum])

HSP 1 Score: 50.1 bits (118), Expect = 1.99e-06
Identity = 21/26 (80.77%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 26
          P KPPKVSFKTKIYH NINS G+IC+
Sbjct: 32 PFKPPKVSFKTKIYHPNINSNGSICL 57

[Close]
BLAST of MC09g1000 vs. NCBI nr
Match: AAA32896.1 (ubiquitin conjugating enzyme, partial [Arabidopsis thaliana] >CAA78716.1 ubiquitin conjugating enzyme, partial [Arabidopsis thaliana])

HSP 1 Score: 49.7 bits (117), Expect = 3.10e-06
Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 26
          P KPPKVSFKTK+YH NINS G+IC+
Sbjct: 31 PFKPPKVSFKTKVYHPNINSNGSICL 56

[Close]
BLAST of MC09g1000 vs. NCBI nr
Match: OAP03470.1 (hypothetical protein AXX17_AT3G08260 [Arabidopsis thaliana])

HSP 1 Score: 49.7 bits (117), Expect = 3.16e-06
Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 26
          P KPPKVSFKTK+YH NINS G+IC+
Sbjct: 32 PFKPPKVSFKTKVYHPNINSNGSICL 57

[Close]
BLAST of MC09g1000 vs. NCBI nr
Match: KAF7146329.1 (hypothetical protein RHSIM_Rhsim04G0008100 [Rhododendron simsii])

HSP 1 Score: 49.7 bits (117), Expect = 3.16e-06
Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 26
          P KPPKVSFKTK+YH NINS G+IC+
Sbjct: 32 PFKPPKVSFKTKVYHPNINSNGSICL 57

[Close]
BLAST of MC09g1000 vs. ExPASy TrEMBL
Match: A0A6J1DVE6 (ubiquitin-conjugating enzyme E2 11-like OS=Momordica charantia OX=3673 GN=LOC111024403 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.27e-08
Identity = 23/26 (88.46%), Postives = 25/26 (96.15%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 26
          PMKPPKV+FKTKIYH NINSKGNIC+
Sbjct: 68 PMKPPKVTFKTKIYHPNINSKGNICL 93

[Close]
BLAST of MC09g1000 vs. ExPASy TrEMBL
Match: A0A178VAX4 (UBC core domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=At3g08690 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.53e-06
Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 26
          P KPPKVSFKTK+YH NINS G+IC+
Sbjct: 32 PFKPPKVSFKTKVYHPNINSNGSICL 57

[Close]
BLAST of MC09g1000 vs. ExPASy TrEMBL
Match: W1QHP1 (Ubiquitin-conjugating enzyme E2 4 OS=Ogataea parapolymorpha (strain ATCC 26012 / BCRC 20466 / JCM 22074 / NRRL Y-7560 / DL-1) OX=871575 GN=HPODL_04598 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.75e-06
Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 26
          P KPPK+SF+TKIYH NINS GNIC+
Sbjct: 61 PFKPPKISFQTKIYHPNINSNGNICL 86

[Close]
BLAST of MC09g1000 vs. ExPASy TrEMBL
Match: A0A1B7SDI1 (Ubiquitin-conjugating enzyme E2 4 OS=Ogataea polymorpha OX=460523 GN=OGAPODRAFT_51083 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.75e-06
Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 26
          P KPPK+SF+TKIYH NINS GNIC+
Sbjct: 61 PFKPPKISFQTKIYHPNINSNGNICL 86

[Close]
BLAST of MC09g1000 vs. ExPASy TrEMBL
Match: A0A1E4T7T1 (UBC core domain-containing protein OS=[Candida] arabinofermentans NRRL YB-2248 OX=983967 GN=CANARDRAFT_5128 PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.75e-06
Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 26
          P KPPK+SF+TKIYH NINS GNIC+
Sbjct: 61 PFKPPKISFQTKIYHPNINSNGNICL 86

[Close]
BLAST of MC09g1000 vs. TAIR 10
Match: AT3G08690.1 (ubiquitin-conjugating enzyme 11 )

HSP 1 Score: 49.3 bits (116), Expect = 5.5e-07
Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 27
          P KPPKVSFKTK+YH NINS G+IC+
Sbjct: 61 PFKPPKVSFKTKVYHPNINSNGSICL 86

[Close]
BLAST of MC09g1000 vs. TAIR 10
Match: AT3G08690.2 (ubiquitin-conjugating enzyme 11 )

HSP 1 Score: 49.3 bits (116), Expect = 5.5e-07
Identity = 20/26 (76.92%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 27
          P KPPKVSFKTK+YH NINS G+IC+
Sbjct: 61 PFKPPKVSFKTKVYHPNINSNGSICL 86

[Close]
BLAST of MC09g1000 vs. TAIR 10
Match: AT3G08700.1 (ubiquitin-conjugating enzyme 12 )

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-06
Identity = 19/26 (73.08%), Postives = 24/26 (92.31%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 27
          P KPPKV+FKTK+YH NI+SKG+IC+
Sbjct: 62 PFKPPKVNFKTKVYHPNIDSKGSICL 87

[Close]
BLAST of MC09g1000 vs. TAIR 10
Match: AT5G56150.1 (ubiquitin-conjugating enzyme 30 )

HSP 1 Score: 47.0 bits (110), Expect = 2.7e-06
Identity = 18/26 (69.23%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 27
          P KPPKV+F+TK+YH NINS G+IC+
Sbjct: 61 PFKPPKVAFRTKVYHPNINSNGSICL 86

[Close]
BLAST of MC09g1000 vs. TAIR 10
Match: AT5G56150.2 (ubiquitin-conjugating enzyme 30 )

HSP 1 Score: 47.0 bits (110), Expect = 2.7e-06
Identity = 18/26 (69.23%), Postives = 23/26 (88.46%), Query Frame = 0 

Query: 1  PMKPPKVSFKTKIYHRNINSKGNICV 27
          P KPPKV+F+TK+YH NINS G+IC+
Sbjct: 61 PFKPPKVAFRTKVYHPNINSNGSICL 86

The following BLAST results are available for this feature:
BLAST of MC09g1000 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P351347.7e-0676.92Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana OX=3702 GN=UBC11 PE=1... [more]
Q9C9Y71.7e-0573.08Probable ubiquitin-conjugating enzyme E2 12 OS=Arabidopsis thaliana OX=3702 GN=U... [more]
P157321.7e-0576.92Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae (strain ATCC ... [more]
P157312.2e-0573.08Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae (strain ATCC 20450... [more]
Q9FKT33.8e-0569.23Ubiquitin-conjugating enzyme E2 30 OS=Arabidopsis thaliana OX=3702 GN=UBC30 PE=1... [more]
BLAST of MC09g1000 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022157782.16.75e-0888.46ubiquitin-conjugating enzyme E2 11-like [Momordica charantia][more]
KAG8483662.11.99e-0680.77hypothetical protein CXB51_022511 [Gossypium anomalum][more]
AAA32896.13.10e-0676.92ubiquitin conjugating enzyme, partial [Arabidopsis thaliana] >CAA78716.1 ubiquit... [more]
OAP03470.13.16e-0676.92hypothetical protein AXX17_AT3G08260 [Arabidopsis thaliana][more]
KAF7146329.13.16e-0676.92hypothetical protein RHSIM_Rhsim04G0008100 [Rhododendron simsii][more]
BLAST of MC09g1000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DVE63.27e-0888.46ubiquitin-conjugating enzyme E2 11-like OS=Momordica charantia OX=3673 GN=LOC111... [more]
A0A178VAX41.53e-0676.92UBC core domain-containing protein OS=Arabidopsis thaliana OX=3702 GN=At3g08690 ... [more]
W1QHP11.75e-0676.92Ubiquitin-conjugating enzyme E2 4 OS=Ogataea parapolymorpha (strain ATCC 26012 /... [more]
A0A1B7SDI11.75e-0676.92Ubiquitin-conjugating enzyme E2 4 OS=Ogataea polymorpha OX=460523 GN=OGAPODRAFT_... [more]
A0A1E4T7T11.75e-0676.92UBC core domain-containing protein OS=[Candida] arabinofermentans NRRL YB-2248 O... [more]
BLAST of MC09g1000 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G08690.15.5e-0776.92ubiquitin-conjugating enzyme 11 [more]
AT3G08690.25.5e-0776.92ubiquitin-conjugating enzyme 11 [more]
AT3G08700.11.2e-0673.08ubiquitin-conjugating enzyme 12 [more]
AT5G56150.12.7e-0669.23ubiquitin-conjugating enzyme 30 [more]
AT5G56150.22.7e-0669.23ubiquitin-conjugating enzyme 30 [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10Ubiquitin Conjugating Enzymecoord: 1..26
e-value: 5.1E-9
score: 37.9
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 1..26
IPR000608Ubiquitin-conjugating enzyme E2PFAMPF00179UQ_concoord: 1..26
e-value: 6.5E-9
score: 35.6
IPR000608Ubiquitin-conjugating enzyme E2PROSITEPS50127UBC_2coord: 1..26
score: 14.457142

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC09g1000.1MC09g1000.1mRNA