MC09g0919 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g0919
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	3'-5' exonuclease domain-containing protein
Location	MC09: 13172781 .. 13173033 (-)
RNA-Seq Expression	MC09g0919
Synteny	MC09g0919

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTGCTCTGATCACCAATGCCTCATTTTTCAACTCATTCACGCCTCCAAAATCCCCGTCTGTTCGATTACTTTGACGACGAGTCCTTCCCCTTCATAGGAGTTGGAATCCGCGAGACGTCAACAAGCTCGGCTAGGATTACGGCTTGAAAGTGAGAAAGGCGGTGGATCTAAGGATTTTGGCTGAGAATTTAATGGAAAAAGGAGATCTGACAAATGCAGGATTGAAGGGATTGGGGAAAGAGATTATTGGA

mRNA sequence

CTCTGCTCTGATCACCAATGCCTCATTTTTCAACTCATTCACGCCTCCAAAATCCCCCTGTTCGATTACTTTGACGACGAGTCCTTCCCCTTCATAGGAGTTGGAATCCGCGAGACGTCAACAAGCTCGGCTAGGTACGGCTTGAAAGTGAGAAAGGCGGTGGATCTAAGGATTTTGGCTGAGAATTTAATGGAAAAAGGAGATCTGACAAATGCAGGATTGAAGGGATTGGGGAAAGAGATTATTGGA

Coding sequence (CDS)

CTCTGCTCTGATCACCAATGCCTCATTTTTCAACTCATTCACGCCTCCAAAATCCCCCTGTTCGATTACTTTGACGACGAGTCCTTCCCCTTCATAGGAGTTGGAATCCGCGAGACGTCAACAAGCTCGGCTAGGTACGGCTTGAAAGTGAGAAAGGCGGTGGATCTAAGGATTTTGGCTGAGAATTTAATGGAAAAAGGAGATCTGACAAATGCAGGATTGAAGGGATTGGGGAAAGAGATTATTGGA

Protein sequence

LCSDHQCLIFQLIHASKIPLFDYFDDESFPFIGVGIRETSTSSARYGLKVRKAVDLRILAENLMEKGDLTNAGLKGLGKEIIG

Homology

[Close]

BLAST of MC09g0919 vs. NCBI nr
Match: XP_022147750.1 (Werner Syndrome-like exonuclease [Momordica charantia])

HSP 1 Score: 99.0 bits (245), Expect = 1.86e-23
Identity = 53/86 (61.63%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1   LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRE-TSTSSARYGLKVRKAVDLR 60
           LC D +CLIFQLIHAS+IP  L D+  DESF F+GVGI E        YGL V   VDLR
Sbjct: 78  LCFDRRCLIFQLIHASEIPRSLTDFLTDESFTFVGVGIGEDVEKLLCDYGLNVSNTVDLR 137

Query: 61  ILAENLMEKGDLTNAGLKGLGKEIIG 83
            LAEN M +GDL NAGLKGL KE++G
Sbjct: 138 NLAENAMGRGDLKNAGLKGLAKEVLG 163

[Close]

BLAST of MC09g0919 vs. NCBI nr
Match: XP_008443244.1 (PREDICTED: Werner Syndrome-like exonuclease [Cucumis melo] >ADN33882.1 3'-5' exonuclease [Cucumis melo subsp. melo] >KAA0053896.1 Werner Syndrome-like exonuclease [Cucumis melo var. makuwa] >TYK25510.1 Werner Syndrome-like exonuclease [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 2.40e-19
Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1   LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLR 60
           LC   +CLI QL+H  +IP  LF++ ++ESF F+GVGI E +   +  YGLKV K +DLR
Sbjct: 78  LCIGRRCLILQLLHIPEIPKSLFEFLENESFTFVGVGIDEDAEKLNCDYGLKVGKRMDLR 137

Query: 61  ILAENLMEKGDLTNAGLKGLGKEIIG 83
            LAE++  +G+L NAGLK LGKE++G
Sbjct: 138 DLAESVTGRGELKNAGLKRLGKEVLG 163

[Close]

BLAST of MC09g0919 vs. NCBI nr
Match: XP_011652174.1 (Werner Syndrome-like exonuclease [Cucumis sativus] >KGN59430.1 hypothetical protein Csa_001395 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 2.40e-19
Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1   LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLR 60
           LC   +CLI QL+H  +IP  LF++ ++ESF F+GVGI E +   +  YGLKV K +DLR
Sbjct: 78  LCIGRRCLILQLLHMPEIPKSLFEFLENESFTFVGVGIDEDAEKLNCDYGLKVGKRMDLR 137

Query: 61  ILAENLMEKGDLTNAGLKGLGKEIIG 83
            LAE++  +G+L NAGLK LGKE++G
Sbjct: 138 DLAESVTGRGELKNAGLKRLGKEVLG 163

[Close]

BLAST of MC09g0919 vs. NCBI nr
Match: XP_038903327.1 (Werner Syndrome-like exonuclease isoform X2 [Benincasa hispida])

HSP 1 Score: 87.0 bits (214), Expect = 4.18e-19
Identity = 46/86 (53.49%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1   LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLR 60
           LC   +CLI QLIH  +IP  LF++ ++ES  F+GVGI E +   +  YGLKV K VDLR
Sbjct: 78  LCMGRRCLILQLIHTPEIPKSLFEFLENESLTFVGVGIDEDAEKLNCDYGLKVGKRVDLR 137

Query: 61  ILAENLMEKGDLTNAGLKGLGKEIIG 83
            LAE++  + DL NAGLK LGKE++G
Sbjct: 138 NLAESVTGRRDLKNAGLKRLGKEVLG 163

[Close]

BLAST of MC09g0919 vs. NCBI nr
Match: XP_038906336.1 (Werner Syndrome-like exonuclease [Benincasa hispida])

HSP 1 Score: 87.0 bits (214), Expect = 6.85e-19
Identity = 46/86 (53.49%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 1   LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGI-RETSTSSARYGLKVRKAVDLR 60
           LC   +CLIFQLIH S+IP  L D+ +D++F F+GVGI ++       Y LKV   VDLR
Sbjct: 82  LCVGRRCLIFQLIHTSEIPESLIDFLEDDTFTFVGVGIDQDVQQLYNDYDLKVANTVDLR 141

Query: 61  ILAENLMEKGDLTNAGLKGLGKEIIG 83
            LA N ME+ DL NAGLK LG+E++G
Sbjct: 142 ELAANEMERDDLKNAGLKILGREVLG 167

[Close]

BLAST of MC09g0919 vs. ExPASy TrEMBL
Match: A0A6J1D107 (Werner Syndrome-like exonuclease OS=Momordica charantia OX=3673 GN=LOC111016613 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 9.02e-24
Identity = 53/86 (61.63%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1   LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRE-TSTSSARYGLKVRKAVDLR 60
           LC D +CLIFQLIHAS+IP  L D+  DESF F+GVGI E        YGL V   VDLR
Sbjct: 78  LCFDRRCLIFQLIHASEIPRSLTDFLTDESFTFVGVGIGEDVEKLLCDYGLNVSNTVDLR 137

Query: 61  ILAENLMEKGDLTNAGLKGLGKEIIG 83
            LAEN M +GDL NAGLKGL KE++G
Sbjct: 138 NLAENAMGRGDLKNAGLKGLAKEVLG 163

[Close]

BLAST of MC09g0919 vs. ExPASy TrEMBL
Match: A0A5A7UI20 (Werner Syndrome-like exonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006600 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.16e-19
Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1   LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLR 60
           LC   +CLI QL+H  +IP  LF++ ++ESF F+GVGI E +   +  YGLKV K +DLR
Sbjct: 78  LCIGRRCLILQLLHIPEIPKSLFEFLENESFTFVGVGIDEDAEKLNCDYGLKVGKRMDLR 137

Query: 61  ILAENLMEKGDLTNAGLKGLGKEIIG 83
            LAE++  +G+L NAGLK LGKE++G
Sbjct: 138 DLAESVTGRGELKNAGLKRLGKEVLG 163

[Close]

BLAST of MC09g0919 vs. ExPASy TrEMBL
Match: E5GBP0 (3'-5' exonuclease OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.16e-19
Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1   LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLR 60
           LC   +CLI QL+H  +IP  LF++ ++ESF F+GVGI E +   +  YGLKV K +DLR
Sbjct: 78  LCIGRRCLILQLLHIPEIPKSLFEFLENESFTFVGVGIDEDAEKLNCDYGLKVGKRMDLR 137

Query: 61  ILAENLMEKGDLTNAGLKGLGKEIIG 83
            LAE++  +G+L NAGLK LGKE++G
Sbjct: 138 DLAESVTGRGELKNAGLKRLGKEVLG 163

[Close]

BLAST of MC09g0919 vs. ExPASy TrEMBL
Match: A0A0A0LBN3 (3'-5' exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G819870 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.16e-19
Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1   LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLR 60
           LC   +CLI QL+H  +IP  LF++ ++ESF F+GVGI E +   +  YGLKV K +DLR
Sbjct: 78  LCIGRRCLILQLLHMPEIPKSLFEFLENESFTFVGVGIDEDAEKLNCDYGLKVGKRMDLR 137

Query: 61  ILAENLMEKGDLTNAGLKGLGKEIIG 83
            LAE++  +G+L NAGLK LGKE++G
Sbjct: 138 DLAESVTGRGELKNAGLKRLGKEVLG 163

[Close]

BLAST of MC09g0919 vs. ExPASy TrEMBL
Match: A0A1S3B738 (Werner Syndrome-like exonuclease OS=Cucumis melo OX=3656 GN=LOC103486879 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.16e-19
Identity = 45/86 (52.33%), Postives = 62/86 (72.09%), Query Frame = 0


Query: 1   LCSDHQCLIFQLIHASKIP--LFDYFDDESFPFIGVGIRETSTS-SARYGLKVRKAVDLR 60
           LC   +CLI QL+H  +IP  LF++ ++ESF F+GVGI E +   +  YGLKV K +DLR
Sbjct: 78  LCIGRRCLILQLLHIPEIPKSLFEFLENESFTFVGVGIDEDAEKLNCDYGLKVGKRMDLR 137

Query: 61  ILAENLMEKGDLTNAGLKGLGKEIIG 83
            LAE++  +G+L NAGLK LGKE++G
Sbjct: 138 DLAESVTGRGELKNAGLKRLGKEVLG 163

The following BLAST results are available for this feature:

BLAST of MC09g0919 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g0919 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147750.1	1.86e-23	61.63	Werner Syndrome-like exonuclease [Momordica charantia]	[more]
XP_008443244.1	2.40e-19	52.33	PREDICTED: Werner Syndrome-like exonuclease [Cucumis melo] >ADN33882.1 3'-5' exo...	[more]
XP_011652174.1	2.40e-19	52.33	Werner Syndrome-like exonuclease [Cucumis sativus] >KGN59430.1 hypothetical prot...	[more]
XP_038903327.1	4.18e-19	53.49	Werner Syndrome-like exonuclease isoform X2 [Benincasa hispida]	[more]
XP_038906336.1	6.85e-19	53.49	Werner Syndrome-like exonuclease [Benincasa hispida]	[more]

BLAST of MC09g0919 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D107	9.02e-24	61.63	Werner Syndrome-like exonuclease OS=Momordica charantia OX=3673 GN=LOC111016613 ...	[more]
A0A5A7UI20	1.16e-19	52.33	Werner Syndrome-like exonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
E5GBP0	1.16e-19	52.33	3'-5' exonuclease OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A0A0LBN3	1.16e-19	52.33	3'-5' exonuclease domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G...	[more]
A0A1S3B738	1.16e-19	52.33	Werner Syndrome-like exonuclease OS=Cucumis melo OX=3656 GN=LOC103486879 PE=4 SV...	[more]

BLAST of MC09g0919 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..83 e-value: 1.2E-12 score: 49.6
None	No IPR available	PANTHER	PTHR13620:SF65	OS01G0660800 PROTEIN	coord: 1..82
None	No IPR available	PANTHER	PTHR13620	3-5 EXONUCLEASE	coord: 1..82
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g0919.1	MC09g0919.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006139	nucleobase-containing compound metabolic process
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008408	3'-5' exonuclease activity
molecular_function	GO:0003676	nucleic acid binding