MC09g0689 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g0689
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Leucine-rich repeat (LRR) family protein
Location	MC09: 6348978 .. 6349544 (+)
RNA-Seq Expression	MC09g0689
Synteny	MC09g0689

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAACTGCCGGAAAAAGGGCACATCTTCAATCCGTCGAGAAGACGACCGCCGCCGCCGCCGCCGCCGTTGATTCCGGCCAACCAAGCAATCCTTCCGGCAATGCCACCGACGAGTCCTGTAACAATACTGGCCGGTCCCAGAATGGCAATTCCGGCTCCGGACATTTTTCCGACCGCGGTGGCCGGTACGGCCAGATTCACATCAACGAGGCGGCCGCCGTCAAGCCGCCGCCCCGCAACTGGCCGTTTATGCGGCCGCCGTTGCAATTTGGAGGTGTGGGTTTTGGTGGGAGCCGTGGTCTCCGGCCTTTGCTGCCGCCGCCAATGGTACCGATGCCACCGCCGGTGCCGCCACCATACGGATACTATCGGTGGTCAGAGCTGCCGCCCCATGGATACAATCAACCGGAGCCACCGCCAGAGGTGCCGCCGGCGTACGGGTATTGTTGGTTGCCGGAGCCACCACCTGAGGCGCCGTCGTGTTGGCAGCAGCATCCGCCACCGATAGTAAATGCGCCGGAGCACTACCTTTTCAGCGATGAGAATATTGAAGGATGTACAGTTGTT

mRNA sequence

GCAACTGCCGGAAAAAGGGCACATCTTCAATCCGTCGAGAAGACGACCGCCGCCGCCGCCGCCGCCGTTGATTCCGGCCAACCAAGCAATCCTTCCGGCAATGCCACCGACGAGTCCTGTAACAATACTGGCCGGTCCCAGAATGGCAATTCCGGCTCCGGACATTTTTCCGACCGCGGTGGCCGGTACGGCCAGATTCACATCAACGAGGCGGCCGCCGTCAAGCCGCCGCCCCGCAACTGGCCGTTTATGCGGCCGCCGTTGCAATTTGGAGGTGTGGGTTTTGGTGGGAGCCGTGGTCTCCGGCCTTTGCTGCCGCCGCCAATGGTACCGATGCCACCGCCGGTGCCGCCACCATACGGATACTATCGGTGGTCAGAGCTGCCGCCCCATGGATACAATCAACCGGAGCCACCGCCAGAGGTGCCGCCGGCGTACGGGTATTGTTGGTTGCCGGAGCCACCACCTGAGGCGCCGTCGTGTTGGCAGCAGCATCCGCCACCGATAGTAAATGCGCCGGAGCACTACCTTTTCAGCGATGAGAATATTGAAGGATGTACAGTTGTT

Coding sequence (CDS)

GCAACTGCCGGAAAAAGGGCACATCTTCAATCCGTCGAGAAGACGACCGCCGCCGCCGCCGCCGCCGTTGATTCCGGCCAACCAAGCAATCCTTCCGGCAATGCCACCGACGAGTCCTGTAACAATACTGGCCGGTCCCAGAATGGCAATTCCGGCTCCGGACATTTTTCCGACCGCGGTGGCCGGTACGGCCAGATTCACATCAACGAGGCGGCCGCCGTCAAGCCGCCGCCCCGCAACTGGCCGTTTATGCGGCCGCCGTTGCAATTTGGAGGTGTGGGTTTTGGTGGGAGCCGTGGTCTCCGGCCTTTGCTGCCGCCGCCAATGGTACCGATGCCACCGCCGGTGCCGCCACCATACGGATACTATCGGTGGTCAGAGCTGCCGCCCCATGGATACAATCAACCGGAGCCACCGCCAGAGGTGCCGCCGGCGTACGGGTATTGTTGGTTGCCGGAGCCACCACCTGAGGCGCCGTCGTGTTGGCAGCAGCATCCGCCACCGATAGTAAATGCGCCGGAGCACTACCTTTTCAGCGATGAGAATATTGAAGGATGTACAGTTGTT

Protein sequence

ATAGKRAHLQSVEKTTAAAAAAVDSGQPSNPSGNATDESCNNTGRSQNGNSGSGHFSDRGGRYGQIHINEAAAVKPPPRNWPFMRPPLQFGGVGFGGSRGLRPLLPPPMVPMPPPVPPPYGYYRWSELPPHGYNQPEPPPEVPPAYGYCWLPEPPPEAPSCWQQHPPPIVNAPEHYLFSDENIEGCTVV

Homology

[Close]

BLAST of MC09g0689 vs. NCBI nr
Match: TYK20998.1 (hypothetical protein E5676_scaffold328G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 1.23e-18
Identity = 61/169 (36.09%), Postives = 80/169 (47.34%), Query Frame = 0


Query: 34  NATDESCNNTGRSQNGNSGSGHFSDRGGRYGQIHINEAAAVKPP-------------PRN 93
           N+ +  C +   +  GNS +G+FSD   R  ++HINEAAAV PP             P +
Sbjct: 24  NSNNHCCKSERTTHYGNSDAGNFSDHRSRSDKVHINEAAAVNPPVPLPLPNRMFMRPPMS 83

Query: 94  WPFMRPPLQFGGVGFGGSRGLRPLLPPPMVPMPPPVPPPYGYYRWSELPPHGYNQPEPPP 153
            P + PP Q+G + F GS G  P +  P     PP PP       +  PPH Y       
Sbjct: 84  SPRLPPPPQYGDMSFRGSHGFWPGMSEPWSSASPPPPP-----MTAMAPPHSY------- 143

Query: 154 EVPPAYGYCWLPEPPPEAPSCWQQHPPPIVNAPEHYLFSDENIEGCTVV 189
                  Y W PEP    P   Q+  PP+ N P HYLF+DEN EGC ++
Sbjct: 144 -------YRW-PEP---VPYYLQEQQPPVGNTPSHYLFNDENTEGCVII 169

[Close]

BLAST of MC09g0689 vs. NCBI nr
Match: KAG6593135.1 (hypothetical protein SDJN03_12611, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.7 bits (221), Expect = 1.95e-18
Identity = 78/205 (38.05%), Postives = 96/205 (46.83%), Query Frame = 0


Query: 4   GKRAHLQSV---EKTTAAAAAAVDSGQPSNPSGNATDESCNNTGRSQNGNSGSGHFSDRG 63
           GK A LQ +       AA+AA  DS  P+ PS  A+D  CN    +QN   GS       
Sbjct: 40  GKLARLQPMGYAAPAPAASAAVRDSVHPNIPSA-ASDPHCNKIDWTQNCVPGSS------ 99

Query: 64  GRYGQIHINEAAAVKPPP----RNWPFMRPPLQFGGVGFGGSRGL-RPL-------LPPP 123
               ++H NEAA   PP     R+   +RP  QFGGVG   SRG  RP+       LPP 
Sbjct: 100 ----KVHFNEAAGAVPPVDVPYRHRLSLRPGSQFGGVGHDASRGFGRPMMEPLPQPLPPA 159

Query: 124 MVP-MPPPVPPPYGYYRWSELPPHGYNQPEPPPEVPPAYGYCWLPEPPPEAPSCWQQHPP 183
           M P MPP +PP  GYYRWSE PP+                              WQQ PP
Sbjct: 160 MPPAMPPAMPPGDGYYRWSEPPPY-----------------------------YWQQQPP 204

Query: 184 P---IVNAPEHYLFSDENIEGCTVV 189
           P   +  AP HYLF+DEN++ C ++
Sbjct: 220 PAPAVAAAPGHYLFNDENVDACKII 204

[Close]

BLAST of MC09g0689 vs. NCBI nr
Match: KAA0057596.1 (hypothetical protein E6C27_scaffold497G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 5.87e-18
Identity = 61/169 (36.09%), Postives = 80/169 (47.34%), Query Frame = 0


Query: 34  NATDESCNNTGRSQNGNSGSGHFSDRGGRYGQIHINEAAAVKPP-------------PRN 93
           N+ +  C +   +  GNS +G+FSD   R  ++HINEAAAV PP             P +
Sbjct: 97  NSNNHCCKSERTTHYGNSDAGNFSDHRSRSDKVHINEAAAVNPPVPLPLPNRMFMRPPMS 156

Query: 94  WPFMRPPLQFGGVGFGGSRGLRPLLPPPMVPMPPPVPPPYGYYRWSELPPHGYNQPEPPP 153
            P + PP Q+G + F GS G  P +  P     PP PP       +  PPH Y       
Sbjct: 157 SPRLPPPPQYGDMSFRGSHGFWPGMSEPWSSASPPPPP-----MTAMAPPHSY------- 216

Query: 154 EVPPAYGYCWLPEPPPEAPSCWQQHPPPIVNAPEHYLFSDENIEGCTVV 189
                  Y W PEP    P   Q+  PP+ N P HYLF+DEN EGC ++
Sbjct: 217 -------YRW-PEP---VPYYLQEQQPPVGNTPSHYLFNDENTEGCVII 242

[Close]

BLAST of MC09g0689 vs. NCBI nr
Match: KGN45423.2 (hypothetical protein Csa_015802, partial [Cucumis sativus])

HSP 1 Score: 72.0 bits (175), Expect = 6.41e-12
Identity = 55/151 (36.42%), Postives = 69/151 (45.70%), Query Frame = 0


Query: 49  GNSGSGHFSDRGGRYGQIHINEAAAVKPPP----RNWPFMRPPL---------QFGG-VG 108
           GNS +G+FSD      ++HINEAA+V PP      N   MRPP+         Q+G  +G
Sbjct: 60  GNSDAGNFSDHRSWPDKVHINEAASVNPPVALPLHNRMLMRPPMPSLRPPPPPQYGDHMG 119

Query: 109 FGGSRGLRPLLPPPMVPMPPPVPPPYGYYRWSELPPHGYNQPEPPPEVPPAYGYCWLPEP 168
           F GS G  P +  P    P   PPP+ YYRW          PEP                
Sbjct: 120 FRGSHGFWPGMSEPWS-SPSHPPPPHSYYRW----------PEP---------------- 179

Query: 169 PPEAPSCWQQHPPPIVNAPEHYLFSDENIEG 185
               P   Q+  PP+ N P HY+F+DEN EG
Sbjct: 180 ---VPYYLQEQQPPVGNTPNHYVFNDENTEG 180

[Close]

BLAST of MC09g0689 vs. NCBI nr
Match: KAB1214007.1 (hypothetical protein CJ030_MR5G017270 [Morella rubra])

HSP 1 Score: 52.8 bits (125), Expect = 1.84e-04
Identity = 41/104 (39.42%), Postives = 44/104 (42.31%), Query Frame = 0


Query: 76  PPPRNWPFMRPPLQFGGVGFGGSRGLRPLLPPPMVPM-----------PPPVPPPYGYYR 135
           PPP + P+  PP    G       G  P  PPP  P            PPP PP YGY  
Sbjct: 171 PPPYDGPYPLPPAPPPG-------GRYPYAPPPPPPPYQPYAYGYEYPPPPPPPGYGYPP 230

Query: 136 WSELPPHGYNQPEPPPEVPPAYGYCWLPEPPPEAPSCWQQHPPP 168
               PP GY  P PPP  P  YGY   P PPP  P  +   PPP
Sbjct: 231 PPPPPPGGYGYPPPPPPPPGGYGY---PPPPPPPPGGYGYPPPP 264

[Close]

BLAST of MC09g0689 vs. ExPASy TrEMBL
Match: A0A5D3DBX5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold328G00250 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.94e-19
Identity = 61/169 (36.09%), Postives = 80/169 (47.34%), Query Frame = 0


Query: 34  NATDESCNNTGRSQNGNSGSGHFSDRGGRYGQIHINEAAAVKPP-------------PRN 93
           N+ +  C +   +  GNS +G+FSD   R  ++HINEAAAV PP             P +
Sbjct: 24  NSNNHCCKSERTTHYGNSDAGNFSDHRSRSDKVHINEAAAVNPPVPLPLPNRMFMRPPMS 83

Query: 94  WPFMRPPLQFGGVGFGGSRGLRPLLPPPMVPMPPPVPPPYGYYRWSELPPHGYNQPEPPP 153
            P + PP Q+G + F GS G  P +  P     PP PP       +  PPH Y       
Sbjct: 84  SPRLPPPPQYGDMSFRGSHGFWPGMSEPWSSASPPPPP-----MTAMAPPHSY------- 143

Query: 154 EVPPAYGYCWLPEPPPEAPSCWQQHPPPIVNAPEHYLFSDENIEGCTVV 189
                  Y W PEP    P   Q+  PP+ N P HYLF+DEN EGC ++
Sbjct: 144 -------YRW-PEP---VPYYLQEQQPPVGNTPSHYLFNDENTEGCVII 169

[Close]

BLAST of MC09g0689 vs. ExPASy TrEMBL
Match: A0A5A7UTY4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00730 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.84e-18
Identity = 61/169 (36.09%), Postives = 80/169 (47.34%), Query Frame = 0


Query: 34  NATDESCNNTGRSQNGNSGSGHFSDRGGRYGQIHINEAAAVKPP-------------PRN 93
           N+ +  C +   +  GNS +G+FSD   R  ++HINEAAAV PP             P +
Sbjct: 97  NSNNHCCKSERTTHYGNSDAGNFSDHRSRSDKVHINEAAAVNPPVPLPLPNRMFMRPPMS 156

Query: 94  WPFMRPPLQFGGVGFGGSRGLRPLLPPPMVPMPPPVPPPYGYYRWSELPPHGYNQPEPPP 153
            P + PP Q+G + F GS G  P +  P     PP PP       +  PPH Y       
Sbjct: 157 SPRLPPPPQYGDMSFRGSHGFWPGMSEPWSSASPPPPP-----MTAMAPPHSY------- 216

Query: 154 EVPPAYGYCWLPEPPPEAPSCWQQHPPPIVNAPEHYLFSDENIEGCTVV 189
                  Y W PEP    P   Q+  PP+ N P HYLF+DEN EGC ++
Sbjct: 217 -------YRW-PEP---VPYYLQEQQPPVGNTPSHYLFNDENTEGCVII 242

[Close]

BLAST of MC09g0689 vs. ExPASy TrEMBL
Match: A0A0A0K5U2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392360 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.25e-14
Identity = 57/155 (36.77%), Postives = 72/155 (46.45%), Query Frame = 0


Query: 49  GNSGSGHFSDRGGRYGQIHINEAAAVKPPP----RNWPFMRPPL---------QFGG-VG 108
           GNS +G+FSD      ++HINEAA+V PP      N   MRPP+         Q+G  +G
Sbjct: 107 GNSDAGNFSDHRSWPDKVHINEAASVNPPVALPLHNRMLMRPPMPSLRPPPPPQYGDHMG 166

Query: 109 FGGSRGLRPLLPPPMVPMPPPVPPPYGYYRWSELPPHGYNQPEPPPEVPPAYGYCWLPEP 168
           F GS G  P +  P    P   PPP+ YYRW          PEP                
Sbjct: 167 FRGSHGFWPGMSEPWS-SPSHPPPPHSYYRW----------PEP---------------- 226

Query: 169 PPEAPSCWQQHPPPIVNAPEHYLFSDENIEGCTVV 189
               P   Q+  PP+ N P HY+F+DEN EGC +V
Sbjct: 227 ---VPYYLQEQQPPVGNTPNHYVFNDENTEGCIIV 231

[Close]

BLAST of MC09g0689 vs. ExPASy TrEMBL
Match: A0A7S2MP23 (Hypothetical protein OS=Helicotheca tamesis OX=374047 GN=HTAM1171_LOCUS6311 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.02e-06
Identity = 36/83 (43.37%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 86  PPLQFGGVGFGGSRGLRPLLPPPMVPMPPPVPPPYGYYRWSELPPHGYNQPEPPPEVPPA 145
           PP      G+GGS   +P  PPP +P PP +PPP   +R    PP  + QP PPP  PP 
Sbjct: 53  PPAAAAQAGWGGSN--KP--PPPRLPPPPSMPPPPQGFRPPPGPPPSFGQPPPPPGPPPG 112

Query: 146 YGYCWLPEPPPEAPSCWQQHPPP 168
           YG     +PPP +   +QQ PPP
Sbjct: 113 YGN----QPPPPSSYSYQQPPPP 127

[Close]

BLAST of MC09g0689 vs. ExPASy TrEMBL
Match: A0A3P6ED49 (LRRNT_2 domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC5T29860H PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 1.91e-04
Identity = 36/75 (48.00%), Postives = 41/75 (54.67%), Query Frame = 0


Query: 103 PLLPPPMVPMPPPVPPPYGYYRWSELPPHGYNQPEPPPEV----PPAYGYCWLPEPPPEA 162
           PL PPP  P PPP PPP   Y     PP+ Y+ P PPP V    PP Y Y   P PPP +
Sbjct: 470 PLPPPPPPPPPPPPPPPPYVYSSPPPPPYVYSSPPPPPYVYSSPPPPYVYSSPPPPPPPS 529

Query: 163 PS--CWQQ-HPPPIV 170
           P   C +  HPPP+V
Sbjct: 530 PPPPCPESSHPPPVV 544

[Close]

BLAST of MC09g0689 vs. TAIR 10
Match: AT3G22800.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 43.1 bits (100), Expect = 2.8e-04
Identity = 35/88 (39.77%), Postives = 41/88 (46.59%), Query Frame = 0


Query: 95  FGGSRGLRPLLPPPMVPMPPPVPPPYGYYRWSELPPHGYNQPEPPPEVPPAYGYCWLPE- 154
           FG S    P  PPP  P PPP PPP         PP+ Y  P PPP  PP Y Y   P  
Sbjct: 372 FGCSPPSPPPPPPPPPPPPPPPPPPPPPPPPPPPPPYVYPSPPPPPPSPPPYVYPPPPPP 431

Query: 155 ---PPPEAPSCWQQHPPPIVNAPEHYLF 179
              PPP +P      PPP   +P+ Y++
Sbjct: 432 YVYPPPPSPPYVYPPPPP---SPQPYMY 456

The following BLAST results are available for this feature:

BLAST of MC09g0689 vs.


Match Name	E-value	Identity	Description

BLAST of MC09g0689 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK20998.1	1.23e-18	36.09	hypothetical protein E5676_scaffold328G00250 [Cucumis melo var. makuwa]	[more]
KAG6593135.1	1.95e-18	38.05	hypothetical protein SDJN03_12611, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0057596.1	5.87e-18	36.09	hypothetical protein E6C27_scaffold497G00730 [Cucumis melo var. makuwa]	[more]
KGN45423.2	6.41e-12	36.42	hypothetical protein Csa_015802, partial [Cucumis sativus]	[more]
KAB1214007.1	1.84e-04	39.42	hypothetical protein CJ030_MR5G017270 [Morella rubra]	[more]

BLAST of MC09g0689 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DBX5	5.94e-19	36.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UTY4	2.84e-18	36.09	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0K5U2	5.25e-14	36.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G392360 PE=4 SV=1	[more]
A0A7S2MP23	9.02e-06	43.37	Hypothetical protein OS=Helicotheca tamesis OX=374047 GN=HTAM1171_LOCUS6311 PE=4...	[more]
A0A3P6ED49	1.91e-04	48.00	LRRNT_2 domain-containing protein OS=Brassica oleracea OX=3712 GN=BOLC5T29860H P...	[more]

BLAST of MC09g0689 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22800.1	2.8e-04	39.77	Leucine-rich repeat (LRR) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g0689.1	MC09g0689.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity