MC09g0229 (gene) Bitter gourd (Dali-11) v1

Overview
NameMC09g0229
Typegene
OrganismMomordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description60S ribosomal protein L28-2 isoform B
LocationMC09: 2032441 .. 2032689 (+)
RNA-Seq ExpressionMC09g0229
SyntenyMC09g0229
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTGAAGAAGTCTCTCTCTCTGACAAAAGCTGAGGACGCGAAGCGCCACAGAAGGCATGAAGCTGCCAGAAAGCGCAGAAGATCTTTCGATCTCTGTTTTTCATCCCCAGAACTACCAATGGAACGTGGGAAGTCTTTGAAAGAGATGGATTCAGAGAAGTTGAAGACTGGGATCAGGAAATGGGCTAAAGCCGTGGTGGCTTATGCTCGCCAAGTAAGCGACCGCCTTGGAAGCTGGCGTCGC

mRNA sequence

ATGTCTGTGAAGAAGTCTCTCTCTCTGACAAAAGCTGAGGACGCGAAGCGCCACAGAAGGCATGAAGCTGCCAGAAAGCGCAGAAGATCTTTCGATCTCTGTTTTTCATCCCCAGAACTACCAATGGAACGTGGGAAGTCTTTGAAAGAGATGGATTCAGAGAAGTTGAAGACTGGGATCAGGAAATGGGCTAAAGCCGTGGTGGCTTATGCTCGCCAAGTAAGCGACCGCCTTGGAAGCTGGCGTCGC

Coding sequence (CDS)

ATGTCTGTGAAGAAGTCTCTCTCTCTGACAAAAGCTGAGGACGCGAAGCGCCACAGAAGGCATGAAGCTGCCAGAAAGCGCAGAAGATCTTTCGATCTCTGTTTTTCATCCCCAGAACTACCAATGGAACGTGGGAAGTCTTTGAAAGAGATGGATTCAGAGAAGTTGAAGACTGGGATCAGGAAATGGGCTAAAGCCGTGGTGGCTTATGCTCGCCAAGTAAGCGACCGCCTTGGAAGCTGGCGTCGC

Protein sequence

MSVKKSLSLTKAEDAKRHRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRKWAKAVVAYARQVSDRLGSWRR
Homology
BLAST of MC09g0229 vs. NCBI nr
Match: KAG6593505.1 (hypothetical protein SDJN03_12981, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 143 bits (360), Expect = 1.61e-42
Identity = 74/83 (89.16%), Postives = 79/83 (95.18%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEDAKRHRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGI 60
          MSVKKSLSLTKAE+AKR  RH+AARKRRRSFDLCFSSP+L MERGKSLKEMDSEKLK+GI
Sbjct: 1  MSVKKSLSLTKAEEAKRSARHDAARKRRRSFDLCFSSPKLQMERGKSLKEMDSEKLKSGI 60

Query: 61 RKWAKAVVAYARQVSDRLGSWRR 83
          RKWAK+VVAYARQVSDR GSWRR
Sbjct: 61 RKWAKSVVAYARQVSDRFGSWRR 83

BLAST of MC09g0229 vs. NCBI nr
Match: KAA0059447.1 (hypothetical protein E6C27_scaffold242G001750 [Cucumis melo var. makuwa] >TYK03877.1 hypothetical protein E5676_scaffold347G00720 [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (346), Expect = 2.20e-40
Identity = 74/83 (89.16%), Postives = 77/83 (92.77%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEDAKRHRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGI 60
          MSVKKSLSLTKAE+AKR  RHEAARKRRRSFDLCFS PELPMERGKSLKEM+SEKLKTGI
Sbjct: 1  MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSYPELPMERGKSLKEMNSEKLKTGI 60

Query: 61 RKWAKAVVAYARQVSDRLGSWRR 83
          +KWAKAVVAYAR VSDR GS RR
Sbjct: 61 KKWAKAVVAYARTVSDRFGSRRR 83

BLAST of MC09g0229 vs. NCBI nr
Match: KGN45542.1 (hypothetical protein Csa_016865 [Cucumis sativus])

HSP 1 Score: 137 bits (344), Expect = 4.45e-40
Identity = 73/83 (87.95%), Postives = 77/83 (92.77%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEDAKRHRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGI 60
          MSVKKSLSLTKAE+AKR  RHEAARKRRRSFDLCFS PE+PMERGKSLKEM+SEKLKTGI
Sbjct: 1  MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSYPEIPMERGKSLKEMNSEKLKTGI 60

Query: 61 RKWAKAVVAYARQVSDRLGSWRR 83
          +KWAKAVVAYAR VSDR GS RR
Sbjct: 61 KKWAKAVVAYARTVSDRFGSRRR 83

BLAST of MC09g0229 vs. NCBI nr
Match: KAG6575488.1 (hypothetical protein SDJN03_26127, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 129 bits (324), Expect = 5.00e-37
Identity = 70/82 (85.37%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEDAKRHRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGI 60
          MSVKKS SLTKAE+AKR  RH+AARKRRRSFDLCFSSPELPME GKSLKEMDSEKLK  I
Sbjct: 1  MSVKKSFSLTKAEEAKRPGRHDAARKRRRSFDLCFSSPELPMEYGKSLKEMDSEKLKDAI 60

Query: 61 RKWAKAVVAYARQVSDRLGSWR 82
          RKWAKAVVAYAR VS+R GS R
Sbjct: 61 RKWAKAVVAYARTVSNRFGSRR 82

BLAST of MC09g0229 vs. NCBI nr
Match: PON96105.1 (hypothetical protein TorRG33x02_080350 [Trema orientale])

HSP 1 Score: 86.7 bits (213), Expect = 3.70e-20
Identity = 51/82 (62.20%), Postives = 58/82 (70.73%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEDAKRHRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGI 60
          MSVKK+LSL + E AK H+       RR  +  CFS  ELPMERGK+LKEMDS KLK  I
Sbjct: 1  MSVKKTLSLNRGEAAKGHQ----ISVRRGKYGRCFSFVELPMERGKTLKEMDSNKLKFEI 60

Query: 61 RKWAKAVVAYARQVSDRLGSWR 82
          ++WAKAVVAYARQVS R G  R
Sbjct: 61 KRWAKAVVAYARQVSGRFGGTR 78

BLAST of MC09g0229 vs. ExPASy TrEMBL
Match: A0A5A7UXU0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00720 PE=4 SV=1)

HSP 1 Score: 137 bits (346), Expect = 1.07e-40
Identity = 74/83 (89.16%), Postives = 77/83 (92.77%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEDAKRHRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGI 60
          MSVKKSLSLTKAE+AKR  RHEAARKRRRSFDLCFS PELPMERGKSLKEM+SEKLKTGI
Sbjct: 1  MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSYPELPMERGKSLKEMNSEKLKTGI 60

Query: 61 RKWAKAVVAYARQVSDRLGSWRR 83
          +KWAKAVVAYAR VSDR GS RR
Sbjct: 61 KKWAKAVVAYARTVSDRFGSRRR 83

BLAST of MC09g0229 vs. ExPASy TrEMBL
Match: A0A0A0KB03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451980 PE=4 SV=1)

HSP 1 Score: 137 bits (344), Expect = 2.15e-40
Identity = 73/83 (87.95%), Postives = 77/83 (92.77%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEDAKRHRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGI 60
          MSVKKSLSLTKAE+AKR  RHEAARKRRRSFDLCFS PE+PMERGKSLKEM+SEKLKTGI
Sbjct: 1  MSVKKSLSLTKAEEAKRLTRHEAARKRRRSFDLCFSYPEIPMERGKSLKEMNSEKLKTGI 60

Query: 61 RKWAKAVVAYARQVSDRLGSWRR 83
          +KWAKAVVAYAR VSDR GS RR
Sbjct: 61 KKWAKAVVAYARTVSDRFGSRRR 83

BLAST of MC09g0229 vs. ExPASy TrEMBL
Match: A0A2P5FE88 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_080350 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.79e-20
Identity = 51/82 (62.20%), Postives = 58/82 (70.73%), Query Frame = 0

Query: 1  MSVKKSLSLTKAEDAKRHRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGI 60
          MSVKK+LSL + E AK H+       RR  +  CFS  ELPMERGK+LKEMDS KLK  I
Sbjct: 1  MSVKKTLSLNRGEAAKGHQ----ISVRRGKYGRCFSFVELPMERGKTLKEMDSNKLKFEI 60

Query: 61 RKWAKAVVAYARQVSDRLGSWR 82
          ++WAKAVVAYARQVS R G  R
Sbjct: 61 KRWAKAVVAYARQVSGRFGGTR 78

BLAST of MC09g0229 vs. ExPASy TrEMBL
Match: A0A498IZM5 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_000327 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.00e-18
Identity = 49/80 (61.25%), Postives = 57/80 (71.25%), Query Frame = 0

Query: 3   VKKSLSLTKAEDAKRHRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRK 62
            +K+LSL   E  K      AA++ R  FD CFS  E+  E GKSLKEMDSEKLK+GI++
Sbjct: 24  TRKTLSLNNGEAGKSSGDVVAAKRTR--FDRCFSFMEVSTEPGKSLKEMDSEKLKSGIKR 83

Query: 63  WAKAVVAYARQVSDRLGSWR 82
           WAKAVVAYARQVSDR GS R
Sbjct: 84  WAKAVVAYARQVSDRFGSSR 101

BLAST of MC09g0229 vs. ExPASy TrEMBL
Match: A0A540KWP0 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_036021 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.00e-18
Identity = 49/80 (61.25%), Postives = 57/80 (71.25%), Query Frame = 0

Query: 3   VKKSLSLTKAEDAKRHRRHEAARKRRRSFDLCFSSPELPMERGKSLKEMDSEKLKTGIRK 62
            +K+LSL   E  K      AA++ R  FD CFS  E+  E GKSLKEMDSEKLK+GI++
Sbjct: 24  TRKTLSLNNGEAGKSSGDVVAAKRTR--FDRCFSFMEVSTEPGKSLKEMDSEKLKSGIKR 83

Query: 63  WAKAVVAYARQVSDRLGSWR 82
           WAKAVVAYARQVSDR GS R
Sbjct: 84  WAKAVVAYARQVSDRFGSSR 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6593505.11.61e-4289.16hypothetical protein SDJN03_12981, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0059447.12.20e-4089.16hypothetical protein E6C27_scaffold242G001750 [Cucumis melo var. makuwa] >TYK038... [more]
KGN45542.14.45e-4087.95hypothetical protein Csa_016865 [Cucumis sativus][more]
KAG6575488.15.00e-3785.37hypothetical protein SDJN03_26127, partial [Cucurbita argyrosperma subsp. sorori... [more]
PON96105.13.70e-2062.20hypothetical protein TorRG33x02_080350 [Trema orientale][more]
Match NameE-valueIdentityDescription
A0A5A7UXU01.07e-4089.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KB032.15e-4087.95Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G451980 PE=4 SV=1[more]
A0A2P5FE881.79e-2062.20Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_080350 PE=4 SV... [more]
A0A498IZM52.00e-1861.25Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_000327 PE=4 SV=1[more]
A0A540KWP02.00e-1861.25Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_036021 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availablePANTHERPTHR36484:SF2OS01G0558700 PROTEINcoord: 1..83
NoneNo IPR availablePANTHERPTHR36484OS01G0558700 PROTEINcoord: 1..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MC09g0229.1MC09g0229.1mRNA