MC09g0219 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC09g0219
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	RNA-binding (RRM/RBD/RNP motifs) family protein
Location	MC09: 1942152 .. 1947826 (+)
RNA-Seq Expression	MC09g0219
Synteny	MC09g0219

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5CDSpolypeptideutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCGATTCAAATAGTTCATAAAAGTTTGATTCCTACAATTAAAAAAGAATTAAATTGATTTGTACCCAACATTTTGTTCTAATTCTAGTTCATACCCAATAAAGTCAGAGGACCAATTCTAGGTTTCAACTACTCACCGACAATTCTTTTATCCGTCGTCACAAAGTTCCACGACCTTCCTCCTCCGTCCTCCGTCGTCGTCCCCAATCTCATCTCCGGAATCTCCGCCACTCCGATGACCACCTACGGCACGATCCCGGCCTCCGCCGCACCCGGAGCCTCCACCGACCTCGAGTTCTTCTCCCGCGCCAAACAGCGAGTTAAAGCCGGTCTCGCCACTCGCGCTCCATGGAGGCTCATGTTCGATTTCCACTCCTTCACCCTCCCGTTCAACTTCCGCGACACTTTCTCTCGGATCAAGACCAACATCGCCTACTTCCGCATGAATTATGTCATAATCGTCCTCGTAATCCTCTTTCTAAGCCTCATATGGCATCCGATTTCCCTCATAGTCTTCTCAATCATGATTGCCGTTTGGCTGTTCCTGTATTTCCTTCGCGACGAGCCTCTGGTTCTCTTCCGCCGTCTGATTGACGATCGAGTGGTGTTGGCAGTGCTGTCGGTGCTCACGCTTGCGTTCTTGTTTCTGACCGACGCGACGCTCAATATTCTGTTGTCGCTTCTGATCGGCGCCGTGGTGGTGCTGATCCACGCCGCCGTGAGGAGGACGGATGACCTGTTCTTGGACGAAGAAGCTACCGCCGTCTTCACCGTCAGTGCGAGCGCTCCTGGATCTTCGATTTCGTTTTGATGGATCGTAATGTTTAATGTCGTTTAATCGTTTCGAATGAAGAAGGTAATCGCATCTTTAATCATCAATTTTCTAGCATTAATTTCGTTTCAAGCATTTATTACGGAATCCATTAACCAACAGAGGAATCGATCAATAAAATCAACATAGGAGTCGAAAATAATCAGAATCTTCTCATTCAAGCATAATATGCTGATCTAAGAACCACCAAATCGATACTCTCGAATTTCTCATTTTAGGGTTTTTGTGGATGGACCTGAATTAGAAATAACACGGAAACAATTTTGGGGGAAATTCCAATTTTTACTTTGAATAATTCAGTGAATTGAATCCTAGACTCAATACTTTTCTAATATAATAAAGACAAAAGAAGAAGAAAAACTAATTTTTTTCAACCGAATTAATTTGACTGGTGCACAAAATAAACTATAATTAATTTCATCAAAACCAACAAACTTAAAAAGGAAAAATTGTTATAGTGTCATTTTTACTAAAAATATATGATTTATTATTCATATAAAAGGGTGAGATTTGACCTAAAAGAAAAATATTAACCCTTTGTGGCACCTTCTTCCTAGTTACTTTAAAATAACTCTACTATTAATATACCAATACCAATGATTGGTTCTTTAGTAGTAACATCAATTGAAAAAATATACATATTTTCCTTATCACGATAATCTTGTACGAACCAACTCGACAATATCCAATGGGATATAAACTTTTAAAATTTAACATCATTCGTCATAGTTTGAAGAGATAAAACATTTTAATATCGTCTCAAAAGTTAATGGTTCGATCTCTCAAATCTCTTACTATCATGGTAGTAACTAACATGTACTACTTCCAACCTCTCATTGTTGACATAAATAAAGTACATAATTTGTAATTATAAAATAAGACACGATCAATTGAGATTAAATAGAAACACAATTAATTATGTTAAATCAAAGATTAAATTGAAACAAAATTCAAACGATATTAATTTGACAATTAAACCAAATAAAAATGTAATATTTTTGCACTATTTTTAAATTAGTAAAATAGAAAATAATGCTAATATTTCCCGCTCGAGTAAGAACGAAGCACGCAGACAGGCAGTAGAAGAGATCTTTTACCCGACTAACAAACCCAGCCGGGACCTTTCAGACTCCGCCGTGTTCGGAGTTAATTCCGGCCGATTTCCATCGATTTCCGCCGTCAATTTCACCGGGAATTCGCCGATGGCACACCAGCCCTACGATCCTTACTATCTCTACCATCAACCAGATCCGAACTACAGTGACCGGAGCAATATCAACACGCTCTTCATCTCCGGTCTCCCAGACGACGTCAAGGCGCGCGAGATACACAACCTTTTCCGCCGCCGGCCTGGATTCGACTCTTGCCAGCTCAAGTACACTGGACGCGGCAACCAGGTTTTCTCATTCTATTTTGGCTGTAGAATGCTATTTGTTGACGAGGAATAAGAAAAGAAAAATATAGATGTGCAAAAGGAGGGCATAATTTCTAGCTTTGCGTTTAATTAAGTGTTATTTGAAAGTATATGAGAGGATGTTGTTGTGGATAGGTTTTAATTTGTAATTCTGCCAGTTTTTAATTGTCTCCAATTTGGATACTGAAGAAACAAAGAATATGTGGGGATTTTGAGCTTCTCTGAGTTTACTTATCTGAAGAGGAATGCTAATTTTCCTCAATCTACAAGGAGAATGTTTACTACTGCCCTTCTTTTTAGTTTTAACATATGAAAGAAAAACTTGGTTGCCGTTTTCAAATAGGTCCTTTTGTTTTCACAGGTTGTGGCATTTGCCACCTTTTACAATCACCAATCAGCTGTGACAGCGCTTCATGCATTAAATGTAAGATTATGGATTGCAAACAGTTCTATGTTTGCGTCTGATTTCTCATTCGTTGTAGAGCTTTGTTGGTTCTTGTTTATTTTTCTTTTGCATGTTGCGCTCTATTTCTATGGCAGGTTCTGATATTAGAAAATTTTCAGTATTGTCAATTTTTAATGTTGAGATGTAATCGTGGTGCTGTACCAGGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTCGCCAGGTCAAATTCTAGGAGAAAACATAAACCAGGTGAGAGCTTAACAATATGGATTTCCTGCTGATGTTAAGTTACTATGCTAAGATGATGTTTTTATTGTGATCGGATTCAATGTTGCTCTGTACAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAGTCAGATATCAATGCCCAAGAAACATCAAGTGATGATGGTGAAATGTTTTTTTTTTATCTCTAATATGAACATTTGTTTCTAATATCATATTCTTCTCCTACGTGTTTGAAATGTAATTTTCATCTTCACACCTGTCTTTTTACTTACCTATATTCAGTATGTAGATTTGAACTATCTTCTTGCCTGCAACTTGTTTTCTCAATATTGCATGTGTAATCTACATTTAACTTGAGTCGCTGCTACCCAATCATAATTTTGGGGCTCACGTGGATATTTGATGTTCCGTTGTATATATTCAGGTGGCAGTGAACCTGATGAACCATCAAAGAAGACCGAACGAAGGTTGAGAAAGCATTAAGTAAAAGTTCAAATTTTCTCAAGTATAATATTAGAAAATATAGTAGGTCTGGGATGGGATATAAAACTGAAATGTTATTAATTTCTTGCATTTTTGCCTTGAGGTTGATTTCATTTATTTCTTGTCTAAATGCTGCAGCAGCGAGGCTGTGATGACTCCTAGTAATGCTTTATCTGTTCCATATGTAAGTCGGTCTATCTTTATTGTTTGGATTTAGGAACAATGCGTGTCAAAATGCAATCTCATTTTGTATTATAACGTAAGAATGAATATTGCTTCTGTGCAGCTGTTAGTCTTAAATGGTCCGCAGTTGTCTACTTTTTGCCAATTCAGTGTATAGTTTATTCTATTTCAAGTTTTGAAGAGACCAGGTTCAGTAAATTTTATTTCCTAGCTTCAACGTTATATTGTTTGCCCATAATAGAATGAGCTGATAAATATTCTGCAGAAAATTGTTTGGTGCTAATTTCAACGGTGTGATTTTGTAGACATGTTCTGCTTGCCAATGAGTAATAGCTTGTTATTAGGGTTAACCATACGATTCAATATGGTTTGATTTATTTGATGTTTATTGCTGCAGGAGCATCATGAAAAAACTGATGGAGGACACTGCTCCACTTTGTTTATCGCAAATCTGGGTCCAAACTGCAACGAAGATGAATTGGGGGAAGTCTTGTCCAAGTGAGTTACACTCGCTCAGTGGTTCTGTAAGAACCTTTAGTGGGATTTCTGAAATTAAGTGATATCATATTCTCTCCTTTATTGCATCCATGATTCTTGTTTTAGTGTGACGTTGAGACGATCACATTAATTGATTAAGTGTTTTTTTAGTTCACATTAATTGATAAGCTAAAATCTTATTTTAAAATTTATGAACCTTCATTTCTCTAACTCATGATTAGTTTTATATAACGTATCCTACCAACTGCAGAATTAAATTGGTCTGCAAAATCTCATGACAAGAATATTTCTAGAAATTTGTTGGGATTATTGAACCAGCTTGGTCTGTAAAAACTGATGGACAATTTATTATGCCTAAAGACCATAGGTACGTTTATTAGTTCATAAGGCTAAGTAGCAAATTAATCAAAGATACCAAGAAAAATGCTATGCTGATAACTGATAAGGGAGTTTTGCTGAGCTGTTGCAGTACATCATAAAACAATGATAGTGGAGCCAGAAATTATTATTCTTTACGAGAGAAGTTTTACGGTGACACTCTTATGATGCCAGATATCCTGGGTTCAACGTGCTAAAATTGCGTGCTAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGTATGCAAAAATTGCTTCAGGAAATTGTTGAGATTGTATTATGCTCCAATAGTCCCTTACATGTGACCGAACATATTGCAATTTGAATTGAAAGCAATGGTATCGGGACGAGTGAATCTTGGGTTTGCACTCACTGGAATGATTATTCTCGAACTCCAAGTCATGCATTTCTTTAATTCTTCAATTACCTGAGTATTGGTTTATATTATTTAGGATTTGAAATGATTTTTAGTAAATTATCTACTTACCATATTGGAAATATCTTGTTTTCAATATTCTTTTCTTAGTTTATTTTTTCCTTATAGGAATGTCACACTTTCAGATCACAATATTTGATGGAGGAGCCCGTTTGAGAAGAAATCTTCAATATTGGAAATCTTTAATTGATAAATTATGAGCATTCCAAAATATTCAATTCAGAAAGAACATAGTAGTAGTAGTTGCCTCCTGATATCATCAGGACTGATGAGGTCCATCTTTAATATGAATTCATTTACCTCATTTTCTTGTGCCAGGAAGTTGAACAAGCTAGGAAGGTCATGGAGGAACTTCAGGGCAGCATGCTACCATCATCAGACCGTGGCGGCATGCATATAGAGTATTTATATATAAATTACATATCAATTTCTATCCATAGGTTAAGGACACTATGATTGATTGATTGATCTTTCATGTTTTTAACTAGGTATGCACGGTCTAAAATGAGGAAGTCTTAATTGAAAATCATTCATCAGTCTAGTATGACTCAAAAATACTGATCGATTTGCTGCAAGGAATGCTTGCTTGTGGTTATTGGCAGGGACCATTTGCTGCTGCTCTGAAGTTCTGTGGCATTATTCAATCTGGTATCGGTTCAAGTGCTTGCAAACTACACATCACTGCCTAAATTGTGACAACTGATGATGTGAACTGATAAACTCATGCGCATTTTAAGTAAAAATA

mRNA sequence

AGCCGATTCAAATAGTTCATAAAAGTTTGATTCCTACAATTAAAAAAGAATTAAATTGATTTGTACCCAACATTTTGTTCTAATTCTAGTTCATACCCAATAAAGTCAGAGGACCAATTCTAGGTTTCAACTACTCACCGACAATTCTTTTATCCGTCGTCACAAAGTTCCACGACCTTCCTCCTCCGTCCTCCGTCGTCGTCCCCAATCTCATCTCCGGAATCTCCGCCACTCCGATGACCACCTACGGCACGATCCCGGCCTCCGCCGCACCCGGAGCCTCCACCGACCTCGAGTTCTTCTCCCGCGCCAAACAGCGAGTTAAAGCCGGTCTCGCCACTCGCGCTCCATGGAGGCTCATGTTCGATTTCCACTCCTTCACCCTCCCGTTCAACTTCCGCGACACTTTCTCTCGGATCAAGACCAACATCGCCTACTTCCGCATGAATTATGTCATAATCGTCCTCGTAATCCTCTTTCTAAGCCTCATATGGCATCCGATTTCCCTCATAGTCTTCTCAATCATGATTGCCGTTTGGCTGTTCCTGTATTTCCTTCGCGACGAGCCTCTGGTTCTCTTCCGCCGTCTGATTGACGATCGAGTGGTGTTGGCAGTGCTGTCGGTGCTCACGCTTGCGTTCTTGTTTCTGACCGACGCGACGCTCAATATTCTGTTGTCGCTTCTGATCGGCGCCGTGGTGGTGCTGATCCACGCCGCCGTGAGGAGGACGGATGACCTGTTCTTGGACGAAGAAGCTACCGCCGTCTTCACCGTCAGTGCGAGCGCTCCTGGATCTTCGATTTCGTTTTGATGGATCGTAATGTTTAATGTCGTTTAATCGTTTCGAATGAAGAAGAACGAAGCACGCAGACAGGCAGTAGAAGAGATCTTTTACCCGACTAACAAACCCAGCCGGGACCTTTCAGACTCCGCCGTGTTCGGAGTTAATTCCGGCCGATTTCCATCGATTTCCGCCGTCAATTTCACCGGGAATTCGCCGATGGCACACCAGCCCTACGATCCTTACTATCTCTACCATCAACCAGATCCGAACTACAGTGACCGGAGCAATATCAACACGCTCTTCATCTCCGGTCTCCCAGACGACGTCAAGGCGCGCGAGATACACAACCTTTTCCGCCGCCGGCCTGGATTCGACTCTTGCCAGCTCAAGTACACTGGACGCGGCAACCAGGTTGTGGCATTTGCCACCTTTTACAATCACCAATCAGCTGTGACAGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTCGCCAGGTCAAATTCTAGGAGAAAACATAAACCAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAGTCAGATATCAATGCCCAAGAAACATCAAGTGATGATGGTGGCAGTGAACCTGATGAACCATCAAAGAAGACCGAACGAAGCAGCGAGGCTGTGATGACTCCTAGTAATGCTTTATCTGTTCCATATGAGCATCATGAAAAAACTGATGGAGGACACTGCTCCACTTTGTTTATCGCAAATCTGGGTCCAAACTGCAACGAAGATGAATTGGGGGAAGTCTTGTCCAAATATCCTGGGTTCAACGTGCTAAAATTGCGTGCTAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGAAGTTGAACAAGCTAGGAAGGTCATGGAGGAACTTCAGGGCAGCATGCTACCATCATCAGACCGTGGCGGCATGCATATAGAGTATGCACGGTCTAAAATGAGGAAGTCTTAATTGAAAATCATTCATCAGTCTAGTATGACTCAAAAATACTGATCGATTTGCTGCAAGGAATGCTTGCTTGTGGTTATTGGCAGGGACCATTTGCTGCTGCTCTGAAGTTCTGTGGCATTATTCAATCTGGTATCGGTTCAAGTGCTTGCAAACTACACATCACTGCCTAAATTGTGACAACTGATGATGTGAACTGATAAACTCATGCGCATTTTAAGTAAAAATA

Coding sequence (CDS)

ATGAAGAAGAACGAAGCACGCAGACAGGCAGTAGAAGAGATCTTTTACCCGACTAACAAACCCAGCCGGGACCTTTCAGACTCCGCCGTGTTCGGAGTTAATTCCGGCCGATTTCCATCGATTTCCGCCGTCAATTTCACCGGGAATTCGCCGATGGCACACCAGCCCTACGATCCTTACTATCTCTACCATCAACCAGATCCGAACTACAGTGACCGGAGCAATATCAACACGCTCTTCATCTCCGGTCTCCCAGACGACGTCAAGGCGCGCGAGATACACAACCTTTTCCGCCGCCGGCCTGGATTCGACTCTTGCCAGCTCAAGTACACTGGACGCGGCAACCAGGTTGTGGCATTTGCCACCTTTTACAATCACCAATCAGCTGTGACAGCGCTTCATGCATTAAATGGTGTCAAATTTGATCCACAAAGTGGATCAGTTCTGCATATTGAACTCGCCAGGTCAAATTCTAGGAGAAAACATAAACCAGGTGGTGGAGCATATGTTGTGATAGATAAAAGGAAAAAGTCAGATATCAATGCCCAAGAAACATCAAGTGATGATGGTGGCAGTGAACCTGATGAACCATCAAAGAAGACCGAACGAAGCAGCGAGGCTGTGATGACTCCTAGTAATGCTTTATCTGTTCCATATGAGCATCATGAAAAAACTGATGGAGGACACTGCTCCACTTTGTTTATCGCAAATCTGGGTCCAAACTGCAACGAAGATGAATTGGGGGAAGTCTTGTCCAAATATCCTGGGTTCAACGTGCTAAAATTGCGTGCTAAAAGTGGAATGCCGGTTGCATTTGCTGATTTTGAGGAAGTTGAACAAGCTAGGAAGGTCATGGAGGAACTTCAGGGCAGCATGCTACCATCATCAGACCGTGGCGGCATGCATATAGAGTATGCACGGTCTAAAATGAGGAAGTCTTAA

Protein sequence

MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRKS

Homology

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BLAST of MC09g0219 vs. ExPASy Swiss-Prot
Match: Q9YGP5 (RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-13
Identity = 37/91 (40.66%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 69  NYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQS 128
           N +    + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF N   
Sbjct: 12  NNNIEEEVRTLFVSGLPIDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDNRAG 71

Query: 129 AVTALHALNGVKFDPQSGSVLHIELARSNSR 160
           A  A +ALNG++FDP++   L +E A++N++
Sbjct: 72  AEAAKNALNGIRFDPENPQTLRLEFAKANTK 100

[Close]

BLAST of MC09g0219 vs. ExPASy Swiss-Prot
Match: Q6DH13 (RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.1e-13
Identity = 37/95 (38.95%), Postives = 59/95 (62.11%), Query Frame = 0


Query: 65  QPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFY 124
           + + + S    + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF 
Sbjct: 8   ETNTSVSLEEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFD 67

Query: 125 NHQSAVTALHALNGVKFDPQSGSVLHIELARSNSR 160
           +   A  A +ALNG++FDP+S   L +E A++N++
Sbjct: 68  SRSGAEAAKNALNGIRFDPESPQTLRLEFAKANTK 100

[Close]

BLAST of MC09g0219 vs. ExPASy Swiss-Prot
Match: Q9W6I1 (RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.6e-12
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 0


Query: 76  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHA 135
           + TLF+SGLP D+K RE++ LFR   G++   +K T +  Q V F TF +   A  A +A
Sbjct: 21  VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSK--QPVGFVTFDSRAGAEAAKNA 80

Query: 136 LNGVKFDPQSGSVLHIELARSNSR 160
           LNG++FDP++   L +E A++N++
Sbjct: 81  LNGIRFDPENPQTLRLEFAKANTK 102

[Close]

BLAST of MC09g0219 vs. ExPASy Swiss-Prot
Match: Q6ZRY4 (RNA-binding protein with multiple splicing 2 OS=Homo sapiens OX=9606 GN=RBPMS2 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.5e-12
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 76  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHA 135
           + TLF+SGLP D+K RE++ LFR   G++   +K T R  Q V F  F +   A  A +A
Sbjct: 30  VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTAR--QPVGFVIFDSRAGAEAAKNA 89

Query: 136 LNGVKFDPQSGSVLHIELARSNSR 160
           LNG++FDP++   L +E A++N++
Sbjct: 90  LNGIRFDPENPQTLRLEFAKANTK 111

[Close]

BLAST of MC09g0219 vs. ExPASy Swiss-Prot
Match: Q8VC52 (RNA-binding protein with multiple splicing 2 OS=Mus musculus OX=10090 GN=Rbpms2 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.5e-12
Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 76  INTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHA 135
           + TLF+SGLP D+K RE++ LFR   G++   +K T R  Q V F  F +   A  A +A
Sbjct: 24  VRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSR--QPVGFVIFDSRAGAEAAKNA 83

Query: 136 LNGVKFDPQSGSVLHIELARSNSR 160
           LNG++FDP++   L +E A++N++
Sbjct: 84  LNGIRFDPENPQTLRLEFAKANTK 105

[Close]

BLAST of MC09g0219 vs. NCBI nr
Match: XP_022148393.1 (uncharacterized protein LOC111017052 isoform X1 [Momordica charantia])

HSP 1 Score: 628 bits (1620), Expect = 4.42e-227
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0


Query: 1   MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPY 60
           MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPY
Sbjct: 1   MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPY 60

Query: 61  YLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAF 120
           YLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAF
Sbjct: 61  YLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAF 120

Query: 121 ATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDI 180
           ATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDI
Sbjct: 121 ATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDI 180

Query: 181 NAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGP 240
           NAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGP
Sbjct: 181 NAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGP 240

Query: 241 NCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG 300
           NCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG
Sbjct: 241 NCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG 300

Query: 301 MHIEYARSKMRKS 313
           MHIEYARSKMRKS
Sbjct: 301 MHIEYARSKMRKS 313

[Close]

BLAST of MC09g0219 vs. NCBI nr
Match: XP_022148402.1 (uncharacterized protein LOC111017052 isoform X2 [Momordica charantia])

HSP 1 Score: 622 bits (1605), Expect = 8.25e-225
Identity = 312/313 (99.68%), Postives = 312/313 (99.68%), Query Frame = 0


Query: 1   MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPY 60
           MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPY
Sbjct: 1   MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPY 60

Query: 61  YLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAF 120
           YLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAF
Sbjct: 61  YLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAF 120

Query: 121 ATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDI 180
           ATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDI
Sbjct: 121 ATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDI 180

Query: 181 NAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGP 240
           NAQETSSDDGGSEPDEPSKKTERS EAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGP
Sbjct: 181 NAQETSSDDGGSEPDEPSKKTERS-EAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGP 240

Query: 241 NCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG 300
           NCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG
Sbjct: 241 NCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG 300

Query: 301 MHIEYARSKMRKS 313
           MHIEYARSKMRKS
Sbjct: 301 MHIEYARSKMRKS 312

[Close]

BLAST of MC09g0219 vs. NCBI nr
Match: XP_023513427.1 (U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 499 bits (1284), Expect = 1.09e-176
Identity = 246/262 (93.89%), Postives = 252/262 (96.18%), Query Frame = 0


Query: 52  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 111
           MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 112 GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 171
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 172 IDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCS 231
           IDKRKKSD NAQETSS+DGGSEPDEPSKKTE+S+EAV+ P N LS PYEHHEK DGG CS
Sbjct: 121 IDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCS 180

Query: 232 TLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGS 291
           TLFIANLGPNCNEDEL EVLSKYPGFNVLKLRAKSGMPVAFADFEE+EQA KVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS 240

Query: 292 MLPSSDRGGMHIEYARSKMRKS 313
           MLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 MLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of MC09g0219 vs. NCBI nr
Match: XP_022964622.1 (protein WHI4 [Cucurbita moschata] >KAG6593512.1 RNA-binding protein, mRNA-processing factor 2a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 498 bits (1281), Expect = 3.11e-176
Identity = 245/262 (93.51%), Postives = 252/262 (96.18%), Query Frame = 0


Query: 52  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 111
           MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 112 GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 171
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 172 IDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCS 231
           IDKRKKSD NAQETSS+DGGSEPDEPSKKTE+S+EAV+ P N LS PYEHHEK DGG CS
Sbjct: 121 IDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCS 180

Query: 232 TLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGS 291
           TLFIANLGPNCNEDEL EVLSKYPGFNVLKLRAKSGMPVAFADFEE+EQA KV+EELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGS 240

Query: 292 MLPSSDRGGMHIEYARSKMRKS 313
           MLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 MLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of MC09g0219 vs. NCBI nr
Match: XP_023000385.1 (U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita maxima])

HSP 1 Score: 496 bits (1276), Expect = 1.80e-175
Identity = 245/262 (93.51%), Postives = 251/262 (95.80%), Query Frame = 0


Query: 52  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 111
           MAHQ YDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQTYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 112 GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 171
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 172 IDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCS 231
           IDKRKKSD NAQETSS+DGGSEPDEPSKKTE+S+EAV+ P N LS PYEHHEK DGG CS
Sbjct: 121 IDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCS 180

Query: 232 TLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGS 291
           TLFIANLGPNCNEDEL EVLSKYPGFNVLKLRAKSGMPVAFADFEE+EQA KVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS 240

Query: 292 MLPSSDRGGMHIEYARSKMRKS 313
           MLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 MLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of MC09g0219 vs. ExPASy TrEMBL
Match: A0A6J1D3Z3 (uncharacterized protein LOC111017052 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017052 PE=4 SV=1)

HSP 1 Score: 628 bits (1620), Expect = 2.14e-227
Identity = 313/313 (100.00%), Postives = 313/313 (100.00%), Query Frame = 0


Query: 1   MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPY 60
           MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPY
Sbjct: 1   MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPY 60

Query: 61  YLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAF 120
           YLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAF
Sbjct: 61  YLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAF 120

Query: 121 ATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDI 180
           ATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDI
Sbjct: 121 ATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDI 180

Query: 181 NAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGP 240
           NAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGP
Sbjct: 181 NAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGP 240

Query: 241 NCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG 300
           NCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG
Sbjct: 241 NCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG 300

Query: 301 MHIEYARSKMRKS 313
           MHIEYARSKMRKS
Sbjct: 301 MHIEYARSKMRKS 313

[Close]

BLAST of MC09g0219 vs. ExPASy TrEMBL
Match: A0A6J1D4Z1 (uncharacterized protein LOC111017052 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111017052 PE=4 SV=1)

HSP 1 Score: 622 bits (1605), Expect = 3.99e-225
Identity = 312/313 (99.68%), Postives = 312/313 (99.68%), Query Frame = 0


Query: 1   MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPY 60
           MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPY
Sbjct: 1   MKKNEARRQAVEEIFYPTNKPSRDLSDSAVFGVNSGRFPSISAVNFTGNSPMAHQPYDPY 60

Query: 61  YLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAF 120
           YLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAF
Sbjct: 61  YLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAF 120

Query: 121 ATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDI 180
           ATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDI
Sbjct: 121 ATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDI 180

Query: 181 NAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGP 240
           NAQETSSDDGGSEPDEPSKKTERS EAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGP
Sbjct: 181 NAQETSSDDGGSEPDEPSKKTERS-EAVMTPSNALSVPYEHHEKTDGGHCSTLFIANLGP 240

Query: 241 NCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG 300
           NCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG
Sbjct: 241 NCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGG 300

Query: 301 MHIEYARSKMRKS 313
           MHIEYARSKMRKS
Sbjct: 301 MHIEYARSKMRKS 312

[Close]

BLAST of MC09g0219 vs. ExPASy TrEMBL
Match: A0A6J1HI97 (protein WHI4 OS=Cucurbita moschata OX=3662 GN=LOC111464580 PE=4 SV=1)

HSP 1 Score: 498 bits (1281), Expect = 1.51e-176
Identity = 245/262 (93.51%), Postives = 252/262 (96.18%), Query Frame = 0


Query: 52  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 111
           MAHQPYDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQPYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 112 GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 171
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 172 IDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCS 231
           IDKRKKSD NAQETSS+DGGSEPDEPSKKTE+S+EAV+ P N LS PYEHHEK DGG CS
Sbjct: 121 IDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCS 180

Query: 232 TLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGS 291
           TLFIANLGPNCNEDEL EVLSKYPGFNVLKLRAKSGMPVAFADFEE+EQA KV+EELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVLEELQGS 240

Query: 292 MLPSSDRGGMHIEYARSKMRKS 313
           MLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 MLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of MC09g0219 vs. ExPASy TrEMBL
Match: A0A6J1KI66 (U2 small nuclear ribonucleoprotein B'' 2 OS=Cucurbita maxima OX=3661 GN=LOC111494642 PE=4 SV=1)

HSP 1 Score: 496 bits (1276), Expect = 8.71e-176
Identity = 245/262 (93.51%), Postives = 251/262 (95.80%), Query Frame = 0


Query: 52  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 111
           MAHQ YDPYYLYHQPD NYSDR+NINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHQTYDPYYLYHQPDSNYSDRNNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 112 GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 171
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 172 IDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCS 231
           IDKRKKSD NAQETSS+DGGSEPDEPSKKTE+S+EAV+ P N LS PYEHHEK DGG CS
Sbjct: 121 IDKRKKSDSNAQETSSEDGGSEPDEPSKKTEQSNEAVVAPGNPLSAPYEHHEKNDGGPCS 180

Query: 232 TLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGS 291
           TLFIANLGPNCNEDEL EVLSKYPGFNVLKLRAKSGMPVAFADFEE+EQA KVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLSKYPGFNVLKLRAKSGMPVAFADFEEIEQASKVMEELQGS 240

Query: 292 MLPSSDRGGMHIEYARSKMRKS 313
           MLPSSDRGGMHIEYARSKMRKS
Sbjct: 241 MLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of MC09g0219 vs. ExPASy TrEMBL
Match: A0A5A7V0X3 (Protein WHI4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00800 PE=4 SV=1)

HSP 1 Score: 489 bits (1260), Expect = 2.39e-173
Identity = 239/262 (91.22%), Postives = 252/262 (96.18%), Query Frame = 0


Query: 52  MAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 111
           MAH PYDPYYLY+QPDP YSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT
Sbjct: 1   MAHHPYDPYYLYNQPDPTYSDRSNINTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYT 60

Query: 112 GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 171
           GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV
Sbjct: 61  GRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVV 120

Query: 172 IDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSVPYEHHEKTDGGHCS 231
           IDKRKK+D N+QETSSDDGGSEPDEPSKK ++S+EAV+TP++A+S PYEHHEK DGG CS
Sbjct: 121 IDKRKKTDANSQETSSDDGGSEPDEPSKKAQQSNEAVVTPASAISAPYEHHEKNDGGPCS 180

Query: 232 TLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGS 291
           TLFIANLGPNCNEDEL EVL KYPGFNVLKLRAKSGMPVAFADFE++EQA KVMEELQGS
Sbjct: 181 TLFIANLGPNCNEDELKEVLCKYPGFNVLKLRAKSGMPVAFADFEDIEQASKVMEELQGS 240

Query: 292 MLPSSDRGGMHIEYARSKMRKS 313
           +LPSSDRGGMHIEYARSKMRKS
Sbjct: 241 VLPSSDRGGMHIEYARSKMRKS 262

[Close]

BLAST of MC09g0219 vs. TAIR 10
Match: AT3G13700.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 323.6 bits (828), Expect = 1.8e-88
Identity = 174/283 (61.48%), Postives = 206/283 (72.79%), Query Frame = 0


Query: 54  HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGF 113
           HQPYDP+Y+Y       H P   P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF
Sbjct: 4   HQPYDPFYVYQLHSHPHHLPPQLPLLADEPGAINTLFVSGLPNDVKAREIHNLFRRRHGF 63

Query: 114 DSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNSRRKHK 173
           +SCQLKYTGRG+QVVAFATF +H+ A+ A++ LNGVKFDPQ+GS LHIELARSNSRRK +
Sbjct: 64  ESCQLKYTGRGDQVVAFATFTSHRFALAAMNELNGVKFDPQTGSNLHIELARSNSRRKER 123

Query: 174 PGGGAYVVIDKRKKSDINAQETSSDDGGSEPDE---------PSKKTERSSEAVMTPSNA 233
           PG G YVVID R K    +Q+  SD+G S+PDE         P +     SEA   P + 
Sbjct: 124 PGSGPYVVIDNRNKEISKSQDDQSDEGDSDPDEVQEPGNSDSPKENDTTKSEADSEPDSK 183

Query: 234 LSVPYEHHEK-TDGGH----CSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMP 293
                 H EK ++GG     CSTLFIANLGPNC EDEL ++LS+YPGF++LK+RA+ GMP
Sbjct: 184 APSANGHLEKASEGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMP 243

Query: 294 VAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRK 313
           VAFADFEE+EQA   M  LQG++L SSDRGGMHIEYARSKMRK
Sbjct: 244 VAFADFEEIEQATDAMNHLQGNLLSSSDRGGMHIEYARSKMRK 286

[Close]

BLAST of MC09g0219 vs. TAIR 10
Match: AT3G13700.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 297.4 bits (760), Expect = 1.4e-80
Identity = 166/293 (56.66%), Postives = 198/293 (67.58%), Query Frame = 0


Query: 54  HQPYDPYYLY-------HQPD--PNYSDRSN-INTLFISGLPDDVKAREIHNLFRRRPGF 113
           HQPYDP+Y+Y       H P   P  +D    INTLF+SGLP+DVKAREIHNLFRRR GF
Sbjct: 4   HQPYDPFYVYQLHSHPHHLPPQLPLLADEPGAINTLFVSGLPNDVKAREIHNLFRRRHGF 63

Query: 114 DSCQLKYTGRGNQ------------------VVAFATFYNHQSAVTALHALNGVKFDPQS 173
           +SCQLKYTGRG+Q                  VVAFATF +H+ A+ A++ LNGVKFDPQ+
Sbjct: 64  ESCQLKYTGRGDQVCKNLQFLFFFIPIFRKAVVAFATFTSHRFALAAMNELNGVKFDPQT 123

Query: 174 GSVLHIELARSNSRRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDE--------- 233
           GS LHIELARSNSRRK +PG G YVVID R K    +Q+  SD+G S+PDE         
Sbjct: 124 GSNLHIELARSNSRRKERPGSGPYVVIDNRNKEISKSQDDQSDEGDSDPDEVQEPGNSDS 183

Query: 234 PSKKTERSSEAVMTPSNALSVPYEHHEK-TDGGH----CSTLFIANLGPNCNEDELGEVL 293
           P +     SEA   P +       H EK ++GG     CSTLFIANLGPNC EDEL ++L
Sbjct: 184 PKENDTTKSEADSEPDSKAPSANGHLEKASEGGSGARACSTLFIANLGPNCTEDELKQLL 243

Query: 294 SKYPGFNVLKLRAKSGMPVAFADFEEVEQARKVMEELQGSMLPSSDRGGMHIE 305
           S+YPGF++LK+RA+ GMPVAFADFEE+EQA   M  LQG++L SSDRGGMHIE
Sbjct: 244 SRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLSSSDRGGMHIE 296

[Close]

BLAST of MC09g0219 vs. TAIR 10
Match: AT2G42240.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 155.6 bits (392), Expect = 6.5e-38
Identity = 99/280 (35.36%), Postives = 150/280 (53.57%), Query Frame = 0


Query: 39  PSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFR 98
           P +S +  T     AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR
Sbjct: 22  PGVSPIPITS----AHSVYLPTHV------SIGARDEVRTLFVAGLPEDVKPREIYNLFR 81

Query: 99  RRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNS 158
             PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+LA+SN 
Sbjct: 82  EFPGYETSHLR-SSDGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNP 141

Query: 159 RRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSV- 218
           + K       +  + K K     +  T+++ G      P   +   +    +P+ +  + 
Sbjct: 142 KSKRSRTDDGWESLKKLK-----SWNTTTESGFGSFQTPGMSSSAYNTIGYSPAQSQGIA 201

Query: 219 ------PYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVA 278
                 P           C TLFIAN+GPNC E EL +V S+  GF  LK++   G PVA
Sbjct: 202 NVAGRAPTSRKPSKAADPCPTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVA 261

Query: 279 FADFEEVEQARKVMEELQGSMLPSSDRGG-MHIEYARSKM 311
           F DF++V  + + +  LQG++L SS  G  + ++YARS+M
Sbjct: 262 FVDFQDVSCSSEALHTLQGTVLYSSLTGEVLRLQYARSRM 285

[Close]

BLAST of MC09g0219 vs. TAIR 10
Match: AT2G42240.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 150.6 bits (379), Expect = 2.1e-36
Identity = 98/281 (34.88%), Postives = 147/281 (52.31%), Query Frame = 0


Query: 39  PSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFR 98
           P +S +  T     AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR
Sbjct: 22  PGVSPIPITS----AHSVYLPTHV------SIGARDEVRTLFVAGLPEDVKPREIYNLFR 81

Query: 99  RRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNS 158
             PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+LA+SN 
Sbjct: 82  EFPGYETSHLR-SSDGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNP 141

Query: 159 RRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSV- 218
           + K       +  + K K     +  T+++ G      P   +   +    +P+ +  + 
Sbjct: 142 KSKRSRTDDGWESLKKLK-----SWNTTTESGFGSFQTPGMSSSAYNTIGYSPAQSQGIA 201

Query: 219 ------PYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVA 278
                 P           C TLFIAN+GPNC E EL +V S+  GF  LK++   G PVA
Sbjct: 202 NVAGRAPTSRKPSKAADPCPTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVA 261

Query: 279 FADFEEVEQARKVMEELQGSMLPSSDRGGMHIEYARSKMRK 313
           F DF++V  + + +  LQG++L SS  G +    +R  MRK
Sbjct: 262 FVDFQDVSCSSEALHTLQGTVLYSSLTGEVLRLQSRMGMRK 286

[Close]

BLAST of MC09g0219 vs. TAIR 10
Match: AT2G42240.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 148.7 bits (374), Expect = 8.0e-36
Identity = 94/268 (35.07%), Postives = 141/268 (52.61%), Query Frame = 0


Query: 39  PSISAVNFTGNSPMAHQPYDPYYLYHQPDPNYSDRSNINTLFISGLPDDVKAREIHNLFR 98
           P +S +  T     AH  Y P ++      +   R  + TLF++GLP+DVK REI+NLFR
Sbjct: 22  PGVSPIPITS----AHSVYLPTHV------SIGARDEVRTLFVAGLPEDVKPREIYNLFR 81

Query: 99  RRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHALNGVKFDPQSGSVLHIELARSNS 158
             PG+++  L+ +  G +  AFA F + QSAV  +HALNG+ FD +  S LHI+LA+SN 
Sbjct: 82  EFPGYETSHLR-SSDGAKPFAFAVFSDLQSAVAVMHALNGMVFDLEKHSTLHIDLAKSNP 141

Query: 159 RRKHKPGGGAYVVIDKRKKSDINAQETSSDDGGSEPDEPSKKTERSSEAVMTPSNALSV- 218
           + K       +  + K K     +  T+++ G      P   +   +    +P+ +  + 
Sbjct: 142 KSKRSRTDDGWESLKKLK-----SWNTTTESGFGSFQTPGMSSSAYNTIGYSPAQSQGIA 201

Query: 219 ------PYEHHEKTDGGHCSTLFIANLGPNCNEDELGEVLSKYPGFNVLKLRAKSGMPVA 278
                 P           C TLFIAN+GPNC E EL +V S+  GF  LK++   G PVA
Sbjct: 202 NVAGRAPTSRKPSKAADPCPTLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVA 261

Query: 279 FADFEEVEQARKVMEELQGSMLPSSDRG 300
           F DF++V  + + +  LQG++L SS  G
Sbjct: 262 FVDFQDVSCSSEALHTLQGTVLYSSLTG 273

The following BLAST results are available for this feature:

BLAST of MC09g0219 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9YGP5	3.2e-13	40.66	RNA-binding protein with multiple splicing 2 OS=Xenopus laevis OX=8355 GN=rbpms2...	[more]
Q6DH13	7.1e-13	38.95	RNA-binding protein, mRNA-processing factor 2a OS=Danio rerio OX=7955 GN=rbpms2a...	[more]
Q9W6I1	1.6e-12	41.67	RNA-binding protein with multiple splicing 2 OS=Gallus gallus OX=9031 GN=RBPMS2 ...	[more]
Q6ZRY4	3.5e-12	41.67	RNA-binding protein with multiple splicing 2 OS=Homo sapiens OX=9606 GN=RBPMS2 P...	[more]
Q8VC52	3.5e-12	41.67	RNA-binding protein with multiple splicing 2 OS=Mus musculus OX=10090 GN=Rbpms2 ...	[more]

BLAST of MC09g0219 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148393.1	4.42e-227	100.00	uncharacterized protein LOC111017052 isoform X1 [Momordica charantia]	[more]
XP_022148402.1	8.25e-225	99.68	uncharacterized protein LOC111017052 isoform X2 [Momordica charantia]	[more]
XP_023513427.1	1.09e-176	93.89	U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita pepo subsp. pepo]	[more]
XP_022964622.1	3.11e-176	93.51	protein WHI4 [Cucurbita moschata] >KAG6593512.1 RNA-binding protein, mRNA-proces...	[more]
XP_023000385.1	1.80e-175	93.51	U2 small nuclear ribonucleoprotein B'' 2 [Cucurbita maxima]	[more]

BLAST of MC09g0219 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D3Z3	2.14e-227	100.00	uncharacterized protein LOC111017052 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1D4Z1	3.99e-225	99.68	uncharacterized protein LOC111017052 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1HI97	1.51e-176	93.51	protein WHI4 OS=Cucurbita moschata OX=3662 GN=LOC111464580 PE=4 SV=1	[more]
A0A6J1KI66	8.71e-176	93.51	U2 small nuclear ribonucleoprotein B'' 2 OS=Cucurbita maxima OX=3661 GN=LOC11149...	[more]
A0A5A7V0X3	2.39e-173	91.22	Protein WHI4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G00800 P...	[more]

BLAST of MC09g0219 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13700.2	1.8e-88	61.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G13700.1	1.4e-80	56.66	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.1	6.5e-38	35.36	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.3	2.1e-36	34.88	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G42240.2	8.0e-36	35.07	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 232..304 e-value: 5.4E-8 score: 42.6 coord: 78..152 e-value: 1.0E-5 score: 35.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 233..295 e-value: 4.8E-10 score: 39.1 coord: 79..142 e-value: 4.3E-7 score: 29.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 231..308 score: 11.519956
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 77..156 score: 11.622288
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 224..313 e-value: 1.0E-18 score: 69.2
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 72..159 e-value: 5.1E-21 score: 76.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..213
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 52..302
None	No IPR available	PANTHER	PTHR10501:SF43	RNA-BINDING PROTEIN-RELATED	coord: 52..302
None	No IPR available	CDD	cd12245	RRM_scw1_like	coord: 230..307 e-value: 3.10263E-40 score: 133.484
None	No IPR available	CDD	cd12420	RRM_RBPMS_like	coord: 77..152 e-value: 2.49357E-30 score: 108.126
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 77..293

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC09g0219.1	MC09g0219.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding