MC08g_new0473 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g_new0473
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	Unknown protein
Location	MC08: 23636627 .. 23637102 (+)
RNA-Seq Expression	MC08g_new0473
Synteny	MC08g_new0473

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAACTTAGTAGCTCAAGCTCAGGCATAGGTGAGCTTATGAGCTCGGCAATAGGTGAGCCAAGGAGCTCGACCATAGGTGAGCTTATGAGCTCGGCTATAGGTGAGCTAAGGAGCTCGGCCATAGGTGAGCTTATGAGCTCGGCCATAGGTGAGCTTAGTAGCTCGGCAGTAGCTTGGTCATATCTTGCCACGTGGTATGTCATATTTTTGCCTCCAACATTTGCCCCCACTTTGGTAAGTTATGAAGCTAACTTGTCAAATGACTGTTTCTTAGGTCATACTAATACGTGGCGAGATCTATGAGAAGTTTCGTCATGCTCTCTTCTCTGTAAGGTCTTGTTGTCAAGACTTGAGCTAATTTTTAGAAGTTTCGACTCTAGGTGGCCCCGATCTTCAAAGTCGATGTAATCTTGGTTAGTCACTCTTTGAAGATTTCGATATCTGATGGCGGTTCATTCTTTTTAGCTTAA

mRNA sequence

ATGGATGAACTTAGTAGCTCAAGCTCAGGCATAGGTGAGCTTATGAGCTCGGCAATAGGTGAGCCAAGGAGCTCGACCATAGGTGAGCTTATGAGCTCGGCTATAGGTGAGCTAAGGAGCTCGGCCATAGGTGAGCTTATGAGCTCGGCCATAGGTGAGCTTAGTAGCTCGGCAGTAGCTTGGTCATATCTTGCCACGTGGTATGTCATATTTTTGCCTCCAACATTTGCCCCCACTTTGGTGGCCCCGATCTTCAAAGTCGATGTAATCTTGGTTAGTCACTCTTTGAAGATTTCGATATCTGATGGCGGTTCATTCTTTTTAGCTTAA

Coding sequence (CDS)

ATGGATGAACTTAGTAGCTCAAGCTCAGGCATAGGTGAGCTTATGAGCTCGGCAATAGGTGAGCCAAGGAGCTCGACCATAGGTGAGCTTATGAGCTCGGCTATAGGTGAGCTAAGGAGCTCGGCCATAGGTGAGCTTATGAGCTCGGCCATAGGTGAGCTTAGTAGCTCGGCAGTAGCTTGGTCATATCTTGCCACGTGGTATGTCATATTTTTGCCTCCAACATTTGCCCCCACTTTGGTGGCCCCGATCTTCAAAGTCGATGTAATCTTGGTTAGTCACTCTTTGAAGATTTCGATATCTGATGGCGGTTCATTCTTTTTAGCTTAA

Protein sequence

MDELSSSSSGIGELMSSAIGEPRSSTIGELMSSAIGELRSSAIGELMSSAIGELSSSAVAWSYLATWYVIFLPPTFAPTLVAPIFKVDVILVSHSLKISISDGGSFFLA

Homology

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BLAST of MC08g_new0473 vs. NCBI nr
Match: XP_031663108.1 (uncharacterized protein LOC116357829 [Oncorhynchus kisutch])

HSP 1 Score: 48.9 bits (115), Expect = 7.59e-04
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 0


Query: 11  IGELMSSAIGEPRSSTIGELMSSAIGELRSSAIGELMSSAIGELSSSAV 59
           +GEL S  +GE  S T+GEL S  +GEL S  +GEL S  +GEL+S  V
Sbjct: 341 VGELTSQTVGELTSQTVGELTSQTVGELTSQTVGELTSQTVGELTSQTV 389

The following BLAST results are available for this feature:

BLAST of MC08g_new0473 vs.


Match Name	E-value	Identity	Description

BLAST of MC08g_new0473 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031663108.1	7.59e-04	51.02	uncharacterized protein LOC116357829 [Oncorhynchus kisutch]	[more]

BLAST of MC08g_new0473 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MC08g_new0473 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g_new0473.1	MC08g_new0473.1	mRNA