MC08g2293 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g2293
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	50S ribosomal protein L18
Location	MC08: 31704418 .. 31706883 (-)
RNA-Seq Expression	MC08g2293
Synteny	MC08g2293

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTATATTCTCACTATAAGATTTTATATCACCATAAAACAACATAGAAATTGGCAAAAATAAGCTAATTTTAAATGGGTAAAGAATTTTAAGATCACTTTTTAGTTTATAGATTGTTAGAAGACCTTACTGCCCTTTTTAAAAATTTTCCCCATAAATAAATCTTCTCAAAATTGAAACCCTCCGTCACGGACGCACCACTCTTCCCCGCTCAGCAACTCCTTCCATTTCCTCCGGCGACGGCGGCGAACTTCCGACGACTGAGGCGGCGTCGGCGGCAAACTTTCAGGTGACGGACACCGCGAACGAAATGCGGCTATAATCACGAAACGCGAAACCTCTTCTTTCATATACTGGTCTCACTTTTCTTGGCTTTTGATCCAATTCCGAGTGCAGTGAGCTTCTCTTTCTCTCCCAACTTAAATTCGCCTCTCAGCTGTGGAAGAGGATAAAATTATTGCAGAAATTAGCTTCATTTTTTGGGTTCCATTCAATTTTACCCTGCTGGGTAATCTCTCTCTCCATCTCTCTCAGCTGTTCTCGTTATTATTCCTTCTGCTCGTTAATTCCATTCATGATTTTTTTTTCCTGATGGAGTTTTGTGGGTTGCCAATAATGCATATCACTTGTTCGATTTATGGATTCTTCCATTTTTTTGTACTCGTTTCTAATTTTCGAAATGCTCGCTGGGATCCCAATTATGCATTGCCTGGTAACTGTTCGACAGAATGCCTCATCGAGGGAATCTGCATGCGTGTTCTTCTGTAATAAATTTAAGGCGTCTCCAATATGTTTAATCCGTTTTTTGTGGAGATATAATAGTTCGCCTCGCCTCTTGTTTACTTTTAGGTACTCATAGGAGTTGCAATCGGTCCTTTCAGTACAAAAAGGTGGTTGGCTTGTAGAAAAATAAAAACATGTTGAAACACTTCCTTGGAATTATGCGGAAACATGTCGTTTGCACATGTGAAGTAAACAGGGTCAGGCCTTATTTCTTTGTGCCAACAAGTGACTTTCATAAGGGAGAGGTAAAGTTTCTTCTCTTGGCTAATCAGTATTCATGGCTTTAACTATTTCAGCCGTGAGTTTTTCTGCACGAGTAGAGGATCACATATCATGGTTTCTTTTCTCGGTTCGTACTGTTAAATTTTTTTTGGGAGGGGGGTGGAGAACAGAAAGAATTTAGAAATTTAAGAGGGACAGCTATACAGGAGCTGCGAGTTAATTGGTTTTAGGATATGGATATCATACCAACCACCATGGATTTGTATACGGGATTGGAGGGTGAAGCTGTAAGCTTATTAGATATTGAGTTTAAAACTAGATAGACTAGAATTTTAAAGATTCTTCGTGTTTGTCGATAGCAAATATTGTAGAATTTGATAGTTATCATGTGGAGATTAGCCAAGGTTCATATAAGTTGGCCTAGGACACCTACGATTATAAGGAAAAGCATATATTGAAATGTAATATAATCCTTCCTCCTCCTTTTTTCCACTTACATTTGTCCCTAAAAATCTGCATTTATTGGTAACTCTTTTGACTTATGCGAGGATGTTATTTGCGTAAGAGGTTTCTGTGAAGTTTTGTGGTTCAAATTTTAGTTTCCAACGCATGATGATATATGTTCACTGCATAAATTGATCTATATTTTGCATAAGAGTAATTACTTGCCCGATTTATTTAACCAGACTTTTCTAAACCTTAGATTATCAAAACCTCTTCTTGGTCGATGCTTTATCACAGGTTCATTTTGCACCCAGAAGTTTCTTTGGCGTAGAGGACTTCTTAGATGATGATAATAGTAGGCCATATACATACCAAAAGGGGAAGAAGTCCAAAAATCCAAAAAAGCACATATCATTTAAGCAACGGACAGTCGCCTACATGGAGCCATTTACACTTGACGTGTTCATCTCAAAGCGATTTGTTTCGGCATCACTTACGCACAGGGTGACTTGCAAGCAGGTTGCAGTTGCAGGTACTAACTCGAAAGACATTAAAGCTGTTCTTAAATCTCGTTCAGACATACCTGCTTGTTTGGCTGTTGGTAGTATTTTAGCTGAGAGGGCTAGAGAAGCTGATGTTTATACCGCTAGTTATACACCTCGAGAAAGGGACAAATTTGAAGGGAAAATAAGAGCTGTGGTTCAGTCTCTCATTGATAATGGGATAGATGTGAAAATTTATCTGGAGTGAGACCACAGATATTGTTTTTGAAGTAACACTTTTGGATCCTTGATTAATAGCCTTCTGAACCTTCTATTAGATGTTATAATATCAGGGTAACTTTTCACATGTTTTTTTTCCCTTGAATTGAAGTTCTTATGAGAGACTGAGAAAGCTCTGTTTTCAAGTTTGATGAGCTTTTACATGCTCACTGATTCAGTGATTCTTCATTAACACACACATACTTGAGTAAACATGTCAATTATAAATTTATGATATTGAAAATAATTACTTATTG

mRNA sequence

CTTATATTCTCACTATAAGATTTTATATCACCATAAAACAACATAGAAATTGGCAAAAATAAGCTAATTTTAAATGGGTAAAGAATTTTAAGATCACTTTTTAGTTTATAGATTGTTAGAAGACCTTACTGCCCTTTTTAAAAATTTTCCCCATAAATAAATCTTCTCAAAATTGAAACCCTCCGTCACGGACGCACCACTCTTCCCCGCTCAGCAACTCCTTCCATTTCCTCCGGCGACGGCGGCGAACTTCCGACGACTGAGGCGGCGTCGGCGGCAAACTTTCAGGTGACGGACACCGCGAACGAAATGCGGCTATAATCACGAAACGCGAAACCTCTTCTTTCATATACTGGTCTCACTTTTCTTGGCTTTTGATCCAATTCCGAGTGCAGTGAGCTTCTCTTTCTCTCCCAACTTAAATTCGCCTCTCAGCTGTGGAAGAGGATAAAATTATTGCAGAAATTAGCTTCATTTTTTGGGTTCCATTCAATTTTACCCTGCTGGGTACTCATAGGAGTTGCAATCGGTCCTTTCAGTACAAAAAGGTGGTTGGCTTGTAGAAAAATAAAAACATGTTGAAACACTTCCTTGGAATTATGCGGAAACATGTCGTTTGCACATGTGAAGTAAACAGGGTCAGGCCTTATTTCTTTGTGCCAACAAGTGACTTTCATAAGGGAGAGGTTCATTTTGCACCCAGAAGTTTCTTTGGCGTAGAGGACTTCTTAGATGATGATAATAGTAGGCCATATACATACCAAAAGGGGAAGAAGTCCAAAAATCCAAAAAAGCACATATCATTTAAGCAACGGACAGTCGCCTACATGGAGCCATTTACACTTGACGTGTTCATCTCAAAGCGATTTGTTTCGGCATCACTTACGCACAGGGTGACTTGCAAGCAGGTTGCAGTTGCAGGTACTAACTCGAAAGACATTAAAGCTGTTCTTAAATCTCGTTCAGACATACCTGCTTGTTTGGCTGTTGGTAGTATTTTAGCTGAGAGGGCTAGAGAAGCTGATGTTTATACCGCTAGTTATACACCTCGAGAAAGGGACAAATTTGAAGGGAAAATAAGAGCTGTGGTTCAGTCTCTCATTGATAATGGGATAGATGTGAAAATTTATCTGGAGTGAGACCACAGATATTGTTTTTGAAGTAACACTTTTGGATCCTTGATTAATAGCCTTCTGAACCTTCTATTAGATGTTATAATATCAGGGTAACTTTTCACATGTTTTTTTTCCCTTGAATTGAAGTTCTTATGAGAGACTGAGAAAGCTCTGTTTTCAAGTTTGATGAGCTTTTACATGCTCACTGATTCAGTGATTCTTCATTAACACACACATACTTGAGTAAACATGTCAATTATAAATTTATGATATTGAAAATAATTACTTATTG

Coding sequence (CDS)

ATGTTGAAACACTTCCTTGGAATTATGCGGAAACATGTCGTTTGCACATGTGAAGTAAACAGGGTCAGGCCTTATTTCTTTGTGCCAACAAGTGACTTTCATAAGGGAGAGGTTCATTTTGCACCCAGAAGTTTCTTTGGCGTAGAGGACTTCTTAGATGATGATAATAGTAGGCCATATACATACCAAAAGGGGAAGAAGTCCAAAAATCCAAAAAAGCACATATCATTTAAGCAACGGACAGTCGCCTACATGGAGCCATTTACACTTGACGTGTTCATCTCAAAGCGATTTGTTTCGGCATCACTTACGCACAGGGTGACTTGCAAGCAGGTTGCAGTTGCAGGTACTAACTCGAAAGACATTAAAGCTGTTCTTAAATCTCGTTCAGACATACCTGCTTGTTTGGCTGTTGGTAGTATTTTAGCTGAGAGGGCTAGAGAAGCTGATGTTTATACCGCTAGTTATACACCTCGAGAAAGGGACAAATTTGAAGGGAAAATAAGAGCTGTGGTTCAGTCTCTCATTGATAATGGGATAGATGTGAAAATTTATCTGGAGTGA

Protein sequence

MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPYTYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE

Homology

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BLAST of MC08g2293 vs. ExPASy Swiss-Prot
Match: C3MAZ6 (50S ribosomal protein L18 OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) OX=394 GN=rplR PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.7e-04
Identity = 29/92 (31.52%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 90  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREA 149
           L V  S + + A +   V  K +A A T   D+K+ LK+ +D  A  AVG +LAERA +A
Sbjct: 29  LSVHRSSKNIYAQIIDDVAGKTIAAASTLEADLKSALKTGADTAAATAVGKLLAERASKA 88

Query: 150 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
            V    +  R    + G+++A+ ++  + G++
Sbjct: 89  GVKDVVF-DRGAFIYHGRVKALAEAAREGGLN 119

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BLAST of MC08g2293 vs. ExPASy Swiss-Prot
Match: C4Z2U6 (50S ribosomal protein L18 OS=Lachnospira eligens (strain ATCC 27750 / DSM 3376 / VPI C15-48 / C15-B4) OX=515620 GN=rplR PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.7e-04
Identity = 33/119 (27.73%), Postives = 59/119 (49.58%), Query Frame = 0


Query: 63  QKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDI 122
           +K +     +KH   + R     E   L VF S   + A +      K +  A T  K++
Sbjct: 4   KKSRTVVREQKHRRLRNRFSGTAERPRLAVFRSNNHMYAQIIDDTVGKTLVSASTLDKEV 63

Query: 123 KAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
           KA L+  +++ A  AVG+++A+RA E  + T  Y  R    + GKI+A+ ++  + G++
Sbjct: 64  KAELEKTNNVEAAAAVGTVVAKRALEKGIKTVVY-DRGGFIYAGKIKALAEAAREAGLE 121

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BLAST of MC08g2293 vs. ExPASy Swiss-Prot
Match: B1Z777 (50S ribosomal protein L18 OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) OX=441620 GN=rplR PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.7e-04
Identity = 30/92 (32.61%), Postives = 49/92 (53.26%), Query Frame = 0


Query: 90  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREA 149
           L VF S + +   +      + +A A +  KD+KA LK+ +D  A  AVG ++AERA+ A
Sbjct: 29  LSVFRSSKQIYVQVIDDAVGRTLAAASSLDKDLKASLKTGADKAAAEAVGKLVAERAKAA 88

Query: 150 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
            V T     R    F G+++A+  +  + G+D
Sbjct: 89  GV-TKVVFDRSGYIFHGRVKALADAAREGGLD 119

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BLAST of MC08g2293 vs. ExPASy Swiss-Prot
Match: B1LWR0 (50S ribosomal protein L18 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831 / NBRC 15690 / NCIMB 10815 / 0-1) OX=426355 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 6.1e-04
Identity = 29/92 (31.52%), Postives = 50/92 (54.35%), Query Frame = 0


Query: 90  LDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGSILAERAREA 149
           L VF S + +   +   V  K +A A +  K +K  LK+ +D+ A  AVG ++AERA+ A
Sbjct: 29  LSVFRSSKQIYVQVIDDVAGKTLASASSIDKALKGELKTGADVAAATAVGKLVAERAKAA 88

Query: 150 DVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
            V T     R    + G+++AV ++  + G++
Sbjct: 89  GV-TKVIFDRSGYIYHGRVKAVAEAAREGGLE 119

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BLAST of MC08g2293 vs. ExPASy Swiss-Prot
Match: A5FZU9 (50S ribosomal protein L18 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rplR PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 8.0e-04
Identity = 30/110 (27.27%), Postives = 60/110 (54.55%), Query Frame = 0


Query: 72  KKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSD 131
           ++ + ++ R  A+  P  L VF S + + A +      + +A A +    +++ LK+ +D
Sbjct: 12  RQRLRYQIRLKAHGRP-RLSVFRSGKHIYAQVIDDAAGRTLAAASSLDAGLRSALKTGAD 71

Query: 132 IPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGID 182
             A  AVG ++AERA+EA V T     R    + G+++A+ ++  ++G+D
Sbjct: 72  KAAAAAVGKLVAERAKEAGV-TQVVFDRGAYMYHGRVKALAEAARESGLD 119

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BLAST of MC08g2293 vs. NCBI nr
Match: XP_022150717.1 (uncharacterized protein LOC111018783 [Momordica charantia] >XP_022150718.1 uncharacterized protein LOC111018783 [Momordica charantia])

HSP 1 Score: 376 bits (965), Expect = 1.94e-131
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY 60
           MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY
Sbjct: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 187
           DVKIYLE
Sbjct: 181 DVKIYLE 187

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BLAST of MC08g2293 vs. NCBI nr
Match: XP_038890306.1 (50S ribosomal protein L18 [Benincasa hispida])

HSP 1 Score: 359 bits (921), Expect = 9.92e-125
Identity = 179/187 (95.72%), Postives = 181/187 (96.79%), Query Frame = 0


Query: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY 60
           ML+HFLG MRKHVVC CEVNRVRPY  VPTSDFHKGEVH+APRSFFGVEDFLDDDNSRPY
Sbjct: 1   MLRHFLGNMRKHVVCACEVNRVRPYLLVPTSDFHKGEVHYAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKVKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLKSRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 187
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of MC08g2293 vs. NCBI nr
Match: XP_022999138.1 (uncharacterized protein LOC111493611 [Cucurbita maxima] >XP_022999139.1 uncharacterized protein LOC111493611 [Cucurbita maxima])

HSP 1 Score: 357 bits (916), Expect = 5.74e-124
Identity = 175/187 (93.58%), Postives = 181/187 (96.79%), Query Frame = 0


Query: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY 60
           MLKH LG MRKHVVC+CEVNR RPY FVPTSDFHKGE H+APRSFFGVEDF+DDDNSRPY
Sbjct: 1   MLKHLLGNMRKHVVCSCEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNPKKH+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLKSRSDIPACLAVG IL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 187
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of MC08g2293 vs. NCBI nr
Match: XP_004139203.1 (uncharacterized protein LOC101215592 [Cucumis sativus] >XP_031736382.1 uncharacterized protein LOC101215592 [Cucumis sativus] >XP_031736383.1 uncharacterized protein LOC101215592 [Cucumis sativus] >KGN60851.1 hypothetical protein Csa_019355 [Cucumis sativus])

HSP 1 Score: 354 bits (909), Expect = 6.70e-123
Identity = 176/187 (94.12%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY 60
           MLKHFLG MRKHVVC CEVNR RPY  VPTSDFHKGEVH APRSFFG+EDFLDDDNSRPY
Sbjct: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 187
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of MC08g2293 vs. NCBI nr
Match: XP_022946296.1 (uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_022946297.1 uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_023546735.1 uncharacterized protein LOC111805749 [Cucurbita pepo subsp. pepo] >XP_023546736.1 uncharacterized protein LOC111805749 [Cucurbita pepo subsp. pepo] >KAG7030275.1 hypothetical protein SDJN02_08622 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 354 bits (908), Expect = 9.52e-123
Identity = 174/187 (93.05%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY 60
           MLKH LG MRKH VC CEVNR RPY FVPTSDFHKGE H+APRSFFGVEDF+DDDNSRPY
Sbjct: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPACLAVG IL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 187
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of MC08g2293 vs. ExPASy TrEMBL
Match: A0A6J1DBH5 (uncharacterized protein LOC111018783 OS=Momordica charantia OX=3673 GN=LOC111018783 PE=4 SV=1)

HSP 1 Score: 376 bits (965), Expect = 9.37e-132
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY 60
           MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY
Sbjct: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 187
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of MC08g2293 vs. ExPASy TrEMBL
Match: A0A6J1KIR9 (uncharacterized protein LOC111493611 OS=Cucurbita maxima OX=3661 GN=LOC111493611 PE=4 SV=1)

HSP 1 Score: 357 bits (916), Expect = 2.78e-124
Identity = 175/187 (93.58%), Postives = 181/187 (96.79%), Query Frame = 0


Query: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY 60
           MLKH LG MRKHVVC+CEVNR RPY FVPTSDFHKGE H+APRSFFGVEDF+DDDNSRPY
Sbjct: 1   MLKHLLGNMRKHVVCSCEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNPKKH+SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHVSFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVLKSRSDIPACLAVG IL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLKSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 187
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of MC08g2293 vs. ExPASy TrEMBL
Match: A0A0A0LLI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013320 PE=4 SV=1)

HSP 1 Score: 354 bits (909), Expect = 3.24e-123
Identity = 176/187 (94.12%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY 60
           MLKHFLG MRKHVVC CEVNR RPY  VPTSDFHKGEVH APRSFFG+EDFLDDDNSRPY
Sbjct: 1   MLKHFLGNMRKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGIEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKSKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 187
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of MC08g2293 vs. ExPASy TrEMBL
Match: A0A6J1G387 (uncharacterized protein LOC111450420 OS=Cucurbita moschata OX=3662 GN=LOC111450420 PE=4 SV=1)

HSP 1 Score: 354 bits (908), Expect = 4.61e-123
Identity = 174/187 (93.05%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY 60
           MLKH LG MRKH VC CEVNR RPY FVPTSDFHKGE H+APRSFFGVEDF+DDDNSRPY
Sbjct: 1   MLKHLLGNMRKHAVCACEVNRARPYLFVPTSDFHKGEAHYAPRSFFGVEDFVDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPACLAVG IL+ERA+EADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILSERAKEADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 187
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of MC08g2293 vs. ExPASy TrEMBL
Match: A0A1S3C286 (50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103495625 PE=4 SV=1)

HSP 1 Score: 352 bits (903), Expect = 2.67e-122
Identity = 176/187 (94.12%), Postives = 178/187 (95.19%), Query Frame = 0


Query: 1   MLKHFLGIMRKHVVCTCEVNRVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPY 60
           MLKHFLG M KHVVC CEVNR RPY  VPTSDFHKGEVH APRSFFGVEDFLDDDNSRPY
Sbjct: 1   MLKHFLGNMGKHVVCACEVNRFRPYLLVPTSDFHKGEVHCAPRSFFGVEDFLDDDNSRPY 60

Query: 61  TYQKGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120
           TYQK KKSKNPKKHISFKQRT+AYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK
Sbjct: 61  TYQKAKKSKNPKKHISFKQRTLAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSK 120

Query: 121 DIKAVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180
           DIKAVL+SRSDIPACLAVG ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI
Sbjct: 121 DIKAVLQSRSDIPACLAVGRILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 180

Query: 181 DVKIYLE 187
           DVKIYLE
Sbjct: 181 DVKIYLE 187

[Close]

BLAST of MC08g2293 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 276.2 bits (705), Expect = 2.0e-74
Identity = 134/167 (80.24%), Postives = 152/167 (91.02%), Query Frame = 0


Query: 21  RVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPYTYQKGKKSKNPKKHISFKQR 80
           ++RP+    +  FH G   FAPRSFFGVED++DDD SRPYTYQK KKSKNP KH+SFKQR
Sbjct: 23  KLRPFMCQTSCRFHNGRTVFAPRSFFGVEDYVDDDTSRPYTYQKEKKSKNPDKHVSFKQR 82

Query: 81  TVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGS 140
           TVAYMEPFTLDVFISKRFVSASLTHRVTC+QVAVAGTNSKD+KAVL+SR DIPAC+++G 
Sbjct: 83  TVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIGR 142

Query: 141 ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 188
           IL+ERA+EADVYTASYTPR++DKFEGKIRAVVQSLIDNGIDVKIYL+
Sbjct: 143 ILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGIDVKIYLD 189

[Close]

BLAST of MC08g2293 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 276.2 bits (705), Expect = 2.0e-74
Identity = 134/167 (80.24%), Postives = 152/167 (91.02%), Query Frame = 0


Query: 21  RVRPYFFVPTSDFHKGEVHFAPRSFFGVEDFLDDDNSRPYTYQKGKKSKNPKKHISFKQR 80
           ++RP+    +  FH G   FAPRSFFGVED++DDD SRPYTYQK KKSKNP KH+SFKQR
Sbjct: 68  KLRPFMCQTSCRFHNGRTVFAPRSFFGVEDYVDDDTSRPYTYQKEKKSKNPDKHVSFKQR 127

Query: 81  TVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKSRSDIPACLAVGS 140
           TVAYMEPFTLDVFISKRFVSASLTHRVTC+QVAVAGTNSKD+KAVL+SR DIPAC+++G 
Sbjct: 128 TVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIGR 187

Query: 141 ILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 188
           IL+ERA+EADVYTASYTPR++DKFEGKIRAVVQSLIDNGIDVKIYL+
Sbjct: 188 ILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGIDVKIYLD 234

[Close]

BLAST of MC08g2293 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-25
Identity = 57/119 (47.90%), Postives = 83/119 (69.75%), Query Frame = 0


Query: 69  KNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIKAVLKS 128
           K  ++  +F Q T  +  PF LD++ISK  V A + HRVT K V VA + SKD+K  L S
Sbjct: 179 KKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGS 238

Query: 129 RSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGIDVKIYLE 188
           R ++ AC AVG++LA+R+ E D++   YTPR+ DK EGK++ V+Q+LIDNG++VK+ L+
Sbjct: 239 RRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVNVKVKLK 297

[Close]

BLAST of MC08g2293 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-22
Identity = 51/117 (43.59%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 64  KGKKSKNPKKHISFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCKQVAVAGTNSKDIK 123
           +G+ +K P +  S+KQRT  YM PF L+VF S++F+ A + HR T K ++VA TN++DI+
Sbjct: 68  RGEAAKRPNRK-SWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIR 127

Query: 124 AVLKSRSDIPACLAVGSILAERAREADVYTASYTPRERDKFEGKIRAVVQSLIDNGI 181
             + S  D  AC  +G ++AER+ EADVY  SY PR+ ++ EGK+  V+ ++ ++GI
Sbjct: 128 TNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183

The following BLAST results are available for this feature:

BLAST of MC08g2293 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
C3MAZ6	2.7e-04	31.52	50S ribosomal protein L18 OS=Sinorhizobium fredii (strain NBRC 101917 / NGR234) ...	[more]
C4Z2U6	4.7e-04	27.73	50S ribosomal protein L18 OS=Lachnospira eligens (strain ATCC 27750 / DSM 3376 /...	[more]
B1Z777	4.7e-04	32.61	50S ribosomal protein L18 OS=Methylorubrum populi (strain ATCC BAA-705 / NCIMB 1...	[more]
B1LWR0	6.1e-04	31.52	50S ribosomal protein L18 OS=Methylobacterium radiotolerans (strain ATCC 27329 /...	[more]
A5FZU9	8.0e-04	27.27	50S ribosomal protein L18 OS=Acidiphilium cryptum (strain JF-5) OX=349163 GN=rpl...	[more]

BLAST of MC08g2293 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150717.1	1.94e-131	100.00	uncharacterized protein LOC111018783 [Momordica charantia] >XP_022150718.1 uncha...	[more]
XP_038890306.1	9.92e-125	95.72	50S ribosomal protein L18 [Benincasa hispida]	[more]
XP_022999138.1	5.74e-124	93.58	uncharacterized protein LOC111493611 [Cucurbita maxima] >XP_022999139.1 uncharac...	[more]
XP_004139203.1	6.70e-123	94.12	uncharacterized protein LOC101215592 [Cucumis sativus] >XP_031736382.1 uncharact...	[more]
XP_022946296.1	9.52e-123	93.05	uncharacterized protein LOC111450420 [Cucurbita moschata] >XP_022946297.1 unchar...	[more]

BLAST of MC08g2293 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DBH5	9.37e-132	100.00	uncharacterized protein LOC111018783 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1KIR9	2.78e-124	93.58	uncharacterized protein LOC111493611 OS=Cucurbita maxima OX=3661 GN=LOC111493611...	[more]
A0A0A0LLI4	3.24e-123	94.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G013320 PE=4 SV=1	[more]
A0A6J1G387	4.61e-123	93.05	uncharacterized protein LOC111450420 OS=Cucurbita moschata OX=3662 GN=LOC1114504...	[more]
A0A1S3C286	2.67e-122	94.12	50S ribosomal protein L18 OS=Cucumis melo OX=3656 GN=LOC103495625 PE=4 SV=1	[more]

BLAST of MC08g2293 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08845.1	2.0e-74	80.24	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	2.0e-74	80.24	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	3.8e-25	47.90	Ribosomal L18p/L5e family protein	[more]
AT3G20230.1	1.3e-22	43.59	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.420.100		coord: 64..181 e-value: 1.2E-16 score: 63.2
None	No IPR available	PANTHER	PTHR12899:SF5	RIBOSOMAL L18P/L5E FAMILY PROTEIN	coord: 1..187
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 78..180 e-value: 3.27803E-21 score: 81.8175
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 66..180
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 66..181 e-value: 1.1E-8 score: 35.4
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g2293.1	MC08g2293.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome