MC08g2224 (gene) Bitter gourd (Dali-11) v1

Overview


Name	MC08g2224
Type	gene
Organism	Momordica charantia cv. Dali-11 (Bitter gourd (Dali-11) v1)
Description	60S ribosomal protein L18
Location	MC08: 31037485 .. 31039977 (-)
RNA-Seq Expression	MC08g2224
Synteny	MC08g2224

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: utr5polypeptideCDSutr3

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAAATTCTTTTATATTTAAAAAGGTTAAAATTTAAGTAAGATAGATAGACGTATTAAAAGTTTAGAAAAAATGGAAAAAACCCAAAAATTTATAAACTAAAATAGAGAATTTTCAAAATTTAGAAATAAAGTTAAAAGAGTGAGATTTAAACCTAATTGATTATAAAAACCCAAAATTTCATTGTAGATTCCCTGATCGTACACGTGTACGATCAAGATTAAACTTCTCATGTAGGTCAAGCCGCACAGGATTCGAATTCTCCCTCATCTTCCATGAATAAATAGGGTATTGAAAAACCCTAGAACCATTTTCGTTTCAGTCTCTCAGTCGCCGGCGCAGAAGCGAAGGGATTCTCCACCGAAAGCTCCAATGGTTTTTTTTCTCTCTTTGTCTCAATCTTTTTCACTCCTCCAATGGCGTAGATCAATGTCTTAGATGCGTTTTCCATTTATTTCTTACAGGGGATCGATTTGGTAGCAGGTGGCAAGAGCAAGAAGACGAAGAGGACGGCGCCCAAGTCCGACGATATCTACCTGAAGCTCCTCGTCAAGGTTGGTGTCTCTAATAATCATTGGTTCCGCTGTTCTCATAGCAGGAAAGAGCATTTGCATTCACAGATTTATTTTCTCAGAGAATGGAAATAAATCTGTGTAGTTTCTTCGATGAAAAAAATATGTACTGGGTTAATTAGTTTGAGTTCTGAATCTAATTCGCTATCGGCATCCTAAACTTCAGCCATTGTTAATACTTTACTTGTTTTTCTCCCCTCGTGTTTATTTTCTTGAATCTACAAGCCTAATTACATTTTCAATATGGTTGTTTGATAAGAAAGTAGGGGGAATTTATATGCTGTGATGATATCTGTGTATCCCAGCTCATTATGAGACCTTTCAAAGGTCAAGGAATGAACTAGTTCCACATTTATCTGAGCCCAGAACGAAGCTAGACTCCTGTACTTTGAATGTGAATTATGAACCAATAATTTTATTTTCTATCTAACTGTGATGTTTTAGATTCAAAGTACTTTTTTTCCGATTGAACCAATATTTTGATTTTCTCTTTAACTGTGTTTTTTTTGGAATGCGTTTGTGTGAATCAATCTGGAACCCGGGAGGAATTCTCCGTAGCAATGATGAAATATGTGATACCCAGCTCATTATGAGACTTTCTAAAGGTCAAGGACTGGACAAAATCCACATATTTATCTGAGCCCCAAATCTTCTGCCCTAAAAGCCTTTTGATTTCAATAGTTACCTTCTTTGCTCTTCGAGTTGCAGGCTTCCTGTTTTCTCAGTATTTTTGTTTTTCACTTCTTTATATTGAATCTGGACTTCCTTTTTGCCTTTGTGGAAGGATAGTTGTCGTTGTTCCCTGTGATGTTTCACTTTTTAAACCATGCTAATACTGATCGCATGATGATTGTTCTTCAACTTATGTCTCTGAGGGAACTGGCATACACTCTGGAATTAATTAGTTCTGGAAGAGCTTTGTGTTTGTTTGTATATCATTACCGATACATTTTTTCACTCTTCAATGTCAATTCATGCTATGCTGTAGATTTATATGCCTTATTATCTGAATTGCCTAAATGATGAATCTTTATCTTGTTTGCTGAATTCAGCTGTACCGGTTTCTTGTCCGAAGAACTGGAAGCAATTTCAATGCAGTGATCCTCAAGCGTTTGTTCATGAGCAAGGTCAACAAGCCACCAATTTCACTATCCAGACTTATCAAGTTCATGAAGGGAAAGGTGTGTGATCTTATTTATAATGTATTTTTTACATTTTGACTTTGCCTTTGAGTGTTTGTGTTTTTTTCGTTGTCTAAATTTTCTGGTGGTTAACATGTTTCAGGAAAATAAAATTGCAGTGATTGTTGGAACTGTGACCGATGACATTCGTGTTTATGAAGTCCCAGCTTTGAAAGTTACAGCATTGAAGTTTACCGAGACTGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAATGCTTGACGTTTGATCAGCTTGCCCTGAAGGCTCCTCTTGGTCAGAACACGGTACGATTATAAATCCCAATTTAGGATACACCAATTTTGTATGGCTTTGCCATCCATATATTTCATTCGTTTATGTCTTAATAGAAGAGCCACTTAGTTTGGTTTGTCAAACAACATGCTCGATGGTTTAGATCTTAAAAACTTCTGTTATCTTTGCTTCTGAAGGTTCTTCTTCGAGGACCGAAGAACTCCCGTGAAGCAGTGAAGCACTTTGGACCTGCTCCTGGTGTGCCTCACAGCCACACGAAACCGTATGTGAGGTCGAAGGGAAGGAAGTTTGAGAGAGCAAGGGGAAAGAGAAACAGCAGGGGATTCAGAGTTTAATCTCTCCTACATGTTCAACCTTTTTTGTGAGACAAAAAATTCACGTTTTGCTAGACTTGCAGAAATATTATTATGCCAGACTCGGTCATGTTTTAGTACAAGTTTTCGTTATTATAAAATCAAAATCGGA

mRNA sequence

CAGAAATTCTTTTATATTTAAAAAGGTTAAAATTTAAGTAAGATAGATAGACGTATTAAAAGTTTAGAAAAAATGGAAAAAACCCAAAAATTTATAAACTAAAATAGAGAATTTTCAAAATTTAGAAATAAAGTTAAAAGAGTGAGATTTAAACCTAATTGATTATAAAAACCCAAAATTTCATTGTAGATTCCCTGATCGTACACGTGTACGATCAAGATTAAACTTCTCATGTAGGTCAAGCCGCACAGGATTCGAATTCTCCCTCATCTTCCATGAATAAATAGGGTATTGAAAAACCCTAGAACCATTTTCGTTTCAGTCTCTCAGTCGCCGGCGCAGAAGCGAAGGGATTCTCCACCGAAAGCTCCAATGGGGATCGATTTGGTAGCAGGTGGCAAGAGCAAGAAGACGAAGAGGACGGCGCCCAAGTCCGACGATATCTACCTGAAGCTCCTCGTCAAGCTGTACCGGTTTCTTGTCCGAAGAACTGGAAGCAATTTCAATGCAGTGATCCTCAAGCGTTTGTTCATGAGCAAGGTCAACAAGCCACCAATTTCACTATCCAGACTTATCAAGTTCATGAAGGGAAAGGAAAATAAAATTGCAGTGATTGTTGGAACTGTGACCGATGACATTCGTGTTTATGAAGTCCCAGCTTTGAAAGTTACAGCATTGAAGTTTACCGAGACTGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAATGCTTGACGTTTGATCAGCTTGCCCTGAAGGCTCCTCTTGGTCAGAACACGGTTCTTCTTCGAGGACCGAAGAACTCCCGTGAAGCAGTGAAGCACTTTGGACCTGCTCCTGGTGTGCCTCACAGCCACACGAAACCGTATGTGAGGTCGAAGGGAAGGAAGTTTGAGAGAGCAAGGGGAAAGAGAAACAGCAGGGGATTCAGAGTTTAATCTCTCCTACATGTTCAACCTTTTTTGTGAGACAAAAAATTCACGTTTTGCTAGACTTGCAGAAATATTATTATGCCAGACTCGGTCATGTTTTAGTACAAGTTTTCGTTATTATAAAATCAAAATCGGA

Coding sequence (CDS)

ATGGGGATCGATTTGGTAGCAGGTGGCAAGAGCAAGAAGACGAAGAGGACGGCGCCCAAGTCCGACGATATCTACCTGAAGCTCCTCGTCAAGCTGTACCGGTTTCTTGTCCGAAGAACTGGAAGCAATTTCAATGCAGTGATCCTCAAGCGTTTGTTCATGAGCAAGGTCAACAAGCCACCAATTTCACTATCCAGACTTATCAAGTTCATGAAGGGAAAGGAAAATAAAATTGCAGTGATTGTTGGAACTGTGACCGATGACATTCGTGTTTATGAAGTCCCAGCTTTGAAAGTTACAGCATTGAAGTTTACCGAGACTGCAAGGGCAAGGATTGAGAAGGCAGGTGGTGAATGCTTGACGTTTGATCAGCTTGCCCTGAAGGCTCCTCTTGGTCAGAACACGGTTCTTCTTCGAGGACCGAAGAACTCCCGTGAAGCAGTGAAGCACTTTGGACCTGCTCCTGGTGTGCCTCACAGCCACACGAAACCGTATGTGAGGTCGAAGGGAAGGAAGTTTGAGAGAGCAAGGGGAAAGAGAAACAGCAGGGGATTCAGAGTTTAA

Protein sequence

MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECLTFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSRGFRV

Homology

[Close]

BLAST of MC08g2224 vs. ExPASy Swiss-Prot
Match: Q940B0 (60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 3.6e-89
Identity = 162/187 (86.63%), Postives = 181/187 (96.79%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120
           P+SLSRL++FM GK++KIAV+VGT+TDD+RV+E+PA+KVTAL+FTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLAL+APLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSRGFRV 188
            SRGF+V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of MC08g2224 vs. ExPASy Swiss-Prot
Match: P42791 (60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2)

HSP 1 Score: 327.8 bits (839), Expect = 8.1e-89
Identity = 161/187 (86.10%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120
           P+SLSRL++FM GKE+KIAV+VGT+TDD+RV+E+PA+KVTAL+FTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLAL+APLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSRGFRV 188
            SRGF+V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of MC08g2224 vs. ExPASy Swiss-Prot
Match: O65729 (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1)

HSP 1 Score: 312.8 bits (800), Expect = 2.7e-84
Identity = 158/184 (85.87%), Postives = 174/184 (94.57%), Query Frame = 0


Query: 4   DLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPIS 63
           DL AGGK+KKTKRT+PKS+DIYLKLLVKLYRFLVRRT SNFNAVILKRLFMSKVN+PP+S
Sbjct: 1   DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLS 60

Query: 64  LSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECLTFD 123
           LSRLIK+M+GKE KI V+VG VTDDIRVY+VP +KVTALKFTETARARI+KAGGECLTFD
Sbjct: 61  LSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFD 120

Query: 124 QLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKRNSR 183
           QLAL+ PL  +TVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVRSKGRKFE+ARG+R SR
Sbjct: 121 QLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSR 180

Query: 184 GFRV 188
           GFRV
Sbjct: 181 GFRV 183

[Close]

BLAST of MC08g2224 vs. ExPASy Swiss-Prot
Match: O22254 (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A PE=3 SV=3)

HSP 1 Score: 294.3 bits (752), Expect = 9.9e-79
Identity = 149/188 (79.26%), Postives = 167/188 (88.83%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRT PKSDD+YLKLLVK  R+LVRRT S FNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120
           P+SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTAL+FTE+ARARI KAGGECL
Sbjct: 61  PLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECL 120

Query: 121 TFDQLALKAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGK 180
           TFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K E ARG+
Sbjct: 121 TFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIEIARGR 180

Query: 181 RNSRGFRV 188
           R SRGF+V
Sbjct: 181 RRSRGFKV 188

[Close]

BLAST of MC08g2224 vs. ExPASy Swiss-Prot
Match: Q4PM04 (60S ribosomal protein L18 OS=Ixodes scapularis OX=6945 GN=RpL18 PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 6.2e-65
Identity = 125/188 (66.49%), Postives = 158/188 (84.04%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGID +     +K  R  PKS+++YL LLVK+YRFL RR+G+ FN ++LKRLFMS++NKP
Sbjct: 1   MGID-INHKYDRKVVRRRPKSENVYLGLLVKVYRFLARRSGAKFNRIVLKRLFMSRINKP 60

Query: 61  PISLSRLIKFMK--GKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGE 120
            ISL+R+ +FMK  G+EN IAV+VGTVTDD+R+Y+VP L++ AL+ TE ARARI KAGGE
Sbjct: 61  VISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGE 120

Query: 121 CLTFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARG 180
            LTFDQLA++AP G+ TVL++GP+NSREA +HFGPAPGVPHSHTKPYVRSKGRKFERARG
Sbjct: 121 ILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFERARG 180

Query: 181 KRNSRGFR 187
           +R SR ++
Sbjct: 181 RRKSRRYK 187

[Close]

BLAST of MC08g2224 vs. NCBI nr
Match: XP_022156439.1 (60S ribosomal protein L18-3 [Momordica charantia])

HSP 1 Score: 360 bits (925), Expect = 2.43e-125
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120
           PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120

Query: 121 TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGFRV 187
           NSRGFRV
Sbjct: 181 NSRGFRV 187

[Close]

BLAST of MC08g2224 vs. NCBI nr
Match: KAG7021075.1 (60S ribosomal protein L18-3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 357 bits (916), Expect = 5.74e-124
Identity = 184/187 (98.40%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120
           PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTAL+FTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLAL+APLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGFRV 187
           NSRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of MC08g2224 vs. NCBI nr
Match: XP_022937764.1 (60S ribosomal protein L18-3-like [Cucurbita moschata])

HSP 1 Score: 355 bits (911), Expect = 3.32e-123
Identity = 183/187 (97.86%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKK KRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKAKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120
           PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTAL+FTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLAL+APLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGFRV 187
           NSRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of MC08g2224 vs. NCBI nr
Match: XP_022965965.1 (60S ribosomal protein L18-3 [Cucurbita maxima] >KAG6599207.1 60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 355 bits (911), Expect = 3.32e-123
Identity = 183/187 (97.86%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120
           PISLSRLIKFMKGKE+KIAVIVGTVTDDIRVYEVPALKVTAL+FTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLAL+APLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGFRV 187
           NSRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of MC08g2224 vs. NCBI nr
Match: KAG6586240.1 (60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 355 bits (910), Expect = 4.72e-123
Identity = 182/187 (97.33%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120
           PISLSRLIKFMKGKE+KIAV+VGTVTDDIRVYEVPALKVTAL+FTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKEDKIAVVVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLAL+APLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGFRV 187
           NSRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of MC08g2224 vs. ExPASy TrEMBL
Match: A0A6J1DTG6 (60S ribosomal protein L18-3 OS=Momordica charantia OX=3673 GN=LOC111023330 PE=3 SV=1)

HSP 1 Score: 360 bits (925), Expect = 1.18e-125
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120
           PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120

Query: 121 TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGFRV 187
           NSRGFRV
Sbjct: 181 NSRGFRV 187

[Close]

BLAST of MC08g2224 vs. ExPASy TrEMBL
Match: A0A6J1HQ85 (60S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=1)

HSP 1 Score: 355 bits (911), Expect = 1.61e-123
Identity = 183/187 (97.86%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120
           PISLSRLIKFMKGKE+KIAVIVGTVTDDIRVYEVPALKVTAL+FTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLAL+APLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGFRV 187
           NSRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of MC08g2224 vs. ExPASy TrEMBL
Match: A0A6J1FC57 (60S ribosomal protein L18-3-like OS=Cucurbita moschata OX=3662 GN=LOC111444066 PE=3 SV=1)

HSP 1 Score: 355 bits (911), Expect = 1.61e-123
Identity = 183/187 (97.86%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKK KRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKAKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120
           PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTAL+FTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLAL+APLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGFRV 187
           NSRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of MC08g2224 vs. ExPASy TrEMBL
Match: A0A6J1KGZ8 (60S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111493781 PE=3 SV=1)

HSP 1 Score: 354 bits (908), Expect = 4.61e-123
Identity = 182/187 (97.33%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFN+VILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNSVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120
           PISLSRLIKFMKGKE+KIAVIVGTVTDDIRVYEVPALKVTAL+FTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFMKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLAL+APLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGFRV 187
           NSRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of MC08g2224 vs. ExPASy TrEMBL
Match: A0A6J1G525 (60S ribosomal protein L18-3 OS=Cucurbita moschata OX=3662 GN=LOC111450785 PE=3 SV=1)

HSP 1 Score: 353 bits (905), Expect = 1.32e-122
Identity = 182/187 (97.33%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP
Sbjct: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120
           PISLSRLIKF KGKE+KIAVIVGTVTDDIRVYEVPALKVTAL+FTETARARIEKAGGECL
Sbjct: 61  PISLSRLIKFTKGKEDKIAVIVGTVTDDIRVYEVPALKVTALRFTETARARIEKAGGECL 120

Query: 121 TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLAL+APLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180

Query: 181 NSRGFRV 187
           NSRG+RV
Sbjct: 181 NSRGYRV 187

[Close]

BLAST of MC08g2224 vs. TAIR 10
Match: AT5G27850.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 328.9 bits (842), Expect = 2.6e-90
Identity = 162/187 (86.63%), Postives = 181/187 (96.79%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKLLVKLYRFLVRR+ SNFNAVILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120
           P+SLSRL++FM GK++KIAV+VGT+TDD+RV+E+PA+KVTAL+FTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLAL+APLGQNTVLLRGPKNSREAVKHFGPAPGVPHS+TKPYVR KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEKARGKR 180

Query: 181 NSRGFRV 188
            SRGF+V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of MC08g2224 vs. TAIR 10
Match: AT3G05590.1 (ribosomal protein L18 )

HSP 1 Score: 327.8 bits (839), Expect = 5.7e-90
Identity = 161/187 (86.10%), Postives = 179/187 (95.72%), Query Frame = 0


Query: 1   MGIDLVAGGKSKKTKRTAPKSDDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKP 60
           MGIDL+AGGKSKKTKRTAPKSDD+YLKL VKLYRFLVRRT S FN VILKRLFMSKVNK 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 61  PISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIEKAGGECL 120
           P+SLSRL++FM GKE+KIAV+VGT+TDD+RV+E+PA+KVTAL+FTE ARARIEKAGGECL
Sbjct: 61  PLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECL 120

Query: 121 TFDQLALKAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRKFERARGKR 180
           TFDQLAL+APLGQNTVLLRGPKNSREAVKHFGPAPGVPHSH+KPYVR+KGRKFE+ARGKR
Sbjct: 121 TFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKR 180

Query: 181 NSRGFRV 188
            SRGF+V
Sbjct: 181 KSRGFKV 187

[Close]

BLAST of MC08g2224 vs. TAIR 10
Match: AT2G47570.1 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 208.8 bits (530), Expect = 3.9e-54
Identity = 104/135 (77.04%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 54  MSKVNKPPISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIE 113
           MSKVNK P+SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTAL+FTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 KAGGECLTFDQLALKAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK 173
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 174 FERARGKRNSRGFRV 188
            E ARG+R SRGF+V
Sbjct: 121 IEIARGRRRSRGFKV 135

[Close]

BLAST of MC08g2224 vs. TAIR 10
Match: AT2G47570.2 (Ribosomal protein L18e/L15 superfamily protein )

HSP 1 Score: 208.8 bits (530), Expect = 3.9e-54
Identity = 104/135 (77.04%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 54  MSKVNKPPISLSRLIKFMKGKENKIAVIVGTVTDDIRVYEVPALKVTALKFTETARARIE 113
           MSKVNK P+SLSRL+++M GK+ KIAVIVGTVTDD+R+ +VPAL VTAL+FTE+ARARI 
Sbjct: 1   MSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIH 60

Query: 114 KAGGECLTFDQLALKAPL-GQNTVLLRGPKNSREAVKHFGPAPGVPHSHTKPYVRSKGRK 173
           KAGGECLTFDQLAL  P   +NTVLLRGPKN+REAVKHFGPAPGVPHSHTKPYVR  G+K
Sbjct: 61  KAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120

Query: 174 FERARGKRNSRGFRV 188
            E ARG+R SRGF+V
Sbjct: 121 IEIARGRRRSRGFKV 135

The following BLAST results are available for this feature:

BLAST of MC08g2224 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940B0	3.6e-89	86.63	60S ribosomal protein L18-3 OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1	[more]
P42791	8.1e-89	86.10	60S ribosomal protein L18-2 OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2	[more]
O65729	2.7e-84	85.87	60S ribosomal protein L18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV...	[more]
O22254	9.9e-79	79.26	Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana OX=3702 GN=RPL18A P...	[more]
Q4PM04	6.2e-65	66.49	60S ribosomal protein L18 OS=Ixodes scapularis OX=6945 GN=RpL18 PE=2 SV=1	[more]

BLAST of MC08g2224 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156439.1	2.43e-125	100.00	60S ribosomal protein L18-3 [Momordica charantia]	[more]
KAG7021075.1	5.74e-124	98.40	60S ribosomal protein L18-3 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022937764.1	3.32e-123	97.86	60S ribosomal protein L18-3-like [Cucurbita moschata]	[more]
XP_022965965.1	3.32e-123	97.86	60S ribosomal protein L18-3 [Cucurbita maxima] >KAG6599207.1 60S ribosomal prote...	[more]
KAG6586240.1	4.72e-123	97.33	60S ribosomal protein L18-3, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MC08g2224 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DTG6	1.18e-125	100.00	60S ribosomal protein L18-3 OS=Momordica charantia OX=3673 GN=LOC111023330 PE=3 ...	[more]
A0A6J1HQ85	1.61e-123	97.86	60S ribosomal protein L18-3 OS=Cucurbita maxima OX=3661 GN=LOC111465687 PE=3 SV=...	[more]
A0A6J1FC57	1.61e-123	97.86	60S ribosomal protein L18-3-like OS=Cucurbita moschata OX=3662 GN=LOC111444066 P...	[more]
A0A6J1KGZ8	4.61e-123	97.33	60S ribosomal protein L18-2 OS=Cucurbita maxima OX=3661 GN=LOC111493781 PE=3 SV=...	[more]
A0A6J1G525	1.32e-122	97.33	60S ribosomal protein L18-3 OS=Cucurbita moschata OX=3662 GN=LOC111450785 PE=3 S...	[more]

BLAST of MC08g2224 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27850.1	2.6e-90	86.63	Ribosomal protein L18e/L15 superfamily protein	[more]
AT3G05590.1	5.7e-90	86.10	ribosomal protein L18	[more]
AT2G47570.1	3.9e-54	77.04	Ribosomal protein L18e/L15 superfamily protein	[more]
AT2G47570.2	3.9e-54	77.04	Ribosomal protein L18e/L15 superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (Dali-11) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF17135	Ribosomal_L18	coord: 2..187 e-value: 6.1E-95 score: 316.0
None	No IPR available	GENE3D	3.100.10.10		coord: 1..187 e-value: 8.4E-101 score: 337.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 151..187
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..187
None	No IPR available	PANTHER	PTHR10934:SF19	60S RIBOSOMAL PROTEIN L18-1-RELATED	coord: 1..186
IPR000039	Ribosomal protein L18e	PANTHER	PTHR10934	60S RIBOSOMAL PROTEIN L18	coord: 1..186
IPR036227	Ribosomal L18e/L15P superfamily	SUPERFAMILY	52080	Ribosomal proteins L15p and L18e	coord: 20..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MC08g2224.1	MC08g2224.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome